data_6EKN # _model_server_result.job_id JHjAH0znoEqmL5A-6aVviw _model_server_result.datetime_utc '2024-12-14 07:59:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ekn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6EKN # _exptl.entry_id 6EKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.1 _cell.angle_gamma 90 _cell.entry_id 6EKN _cell.length_a 51.56 _cell.length_b 60.35 _cell.length_c 54.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc2 A OD2 ASP 20 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc3 A O ASP 54 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 A NE2 HIS 64 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc5 A OD2 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 A OD2 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc7 A OD1 ASP 71 A ASP 175 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 A O GLY 72 A GLY 176 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc9 A O GLY 74 A GLY 178 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 A O ILE 76 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 A O ILE 76 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc12 A NE2 HIS 79 A HIS 183 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc13 A O GLY 86 A GLY 190 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc14 A O GLY 88 A GLY 192 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc15 A OD1 ASP 90 A ASP 194 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc16 A ND1 HIS 92 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc17 A OD2 ASP 94 A ASP 198 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc18 A O GLU 95 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc19 A OE2 GLU 95 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc20 A O GLU 97 A GLU 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc21 A OE2 GLU 97 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc22 A NE2 HIS 114 A HIS 218 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc23 A NE2 HIS 118 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc24 A NE2 HIS 124 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc25 B ZN ZN . A ZN 301 1_555 G O26 B9N . A B9N 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc26 D CA CA . A CA 303 1_555 I O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc27 D CA CA . A CA 303 1_555 I O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc28 E CA CA . A CA 304 1_555 I O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc29 E CA CA . A CA 304 1_555 I O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EKN _atom_sites.fract_transf_matrix[1][1] 0.019395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009501 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 500 ZN ZN . C 2 ZN A 1 302 501 ZN ZN . D 3 CA A 1 303 502 CA CA . E 3 CA A 1 304 503 CA CA . F 3 CA A 1 305 504 CA CA . G 4 B9N A 1 306 1 B9N AE7 . H 5 EDO A 1 307 1 EDO EDO . I 6 HOH A 1 401 75 HOH HOH . I 6 HOH A 2 402 116 HOH HOH . I 6 HOH A 3 403 30 HOH HOH . I 6 HOH A 4 404 27 HOH HOH . I 6 HOH A 5 405 55 HOH HOH . I 6 HOH A 6 406 134 HOH HOH . I 6 HOH A 7 407 113 HOH HOH . I 6 HOH A 8 408 127 HOH HOH . I 6 HOH A 9 409 34 HOH HOH . I 6 HOH A 10 410 33 HOH HOH . I 6 HOH A 11 411 47 HOH HOH . I 6 HOH A 12 412 72 HOH HOH . I 6 HOH A 13 413 24 HOH HOH . I 6 HOH A 14 414 11 HOH HOH . I 6 HOH A 15 415 71 HOH HOH . I 6 HOH A 16 416 105 HOH HOH . I 6 HOH A 17 417 120 HOH HOH . I 6 HOH A 18 418 16 HOH HOH . I 6 HOH A 19 419 42 HOH HOH . I 6 HOH A 20 420 50 HOH HOH . I 6 HOH A 21 421 7 HOH HOH . I 6 HOH A 22 422 109 HOH HOH . I 6 HOH A 23 423 104 HOH HOH . I 6 HOH A 24 424 17 HOH HOH . I 6 HOH A 25 425 70 HOH HOH . I 6 HOH A 26 426 61 HOH HOH . I 6 HOH A 27 427 22 HOH HOH . I 6 HOH A 28 428 21 HOH HOH . I 6 HOH A 29 429 59 HOH HOH . I 6 HOH A 30 430 35 HOH HOH . I 6 HOH A 31 431 65 HOH HOH . I 6 HOH A 32 432 86 HOH HOH . I 6 HOH A 33 433 26 HOH HOH . I 6 HOH A 34 434 39 HOH HOH . I 6 HOH A 35 435 53 HOH HOH . I 6 HOH A 36 436 32 HOH HOH . I 6 HOH A 37 437 25 HOH HOH . I 6 HOH A 38 438 12 HOH HOH . I 6 HOH A 39 439 4 HOH HOH . I 6 HOH A 40 440 46 HOH HOH . I 6 HOH A 41 441 119 HOH HOH . I 6 HOH A 42 442 60 HOH HOH . I 6 HOH A 43 443 81 HOH HOH . I 6 HOH A 44 444 23 HOH HOH . I 6 HOH A 45 445 103 HOH HOH . I 6 HOH A 46 446 2 HOH HOH . I 6 HOH A 47 447 54 HOH HOH . I 6 HOH A 48 448 14 HOH HOH . I 6 HOH A 49 449 20 HOH HOH . I 6 HOH A 50 450 100 HOH HOH . I 6 HOH A 51 451 41 HOH HOH . I 6 HOH A 52 452 99 HOH HOH . I 6 HOH A 53 453 83 HOH HOH . I 6 HOH A 54 454 58 HOH HOH . I 6 HOH A 55 455 69 HOH HOH . I 6 HOH A 56 456 5 HOH HOH . I 6 HOH A 57 457 57 HOH HOH . I 6 HOH A 58 458 8 HOH HOH . I 6 HOH A 59 459 36 HOH HOH . I 6 HOH A 60 460 118 HOH HOH . I 6 HOH A 61 461 88 HOH HOH . I 6 HOH A 62 462 3 HOH HOH . I 6 HOH A 63 463 117 HOH HOH . I 6 HOH A 64 464 48 HOH HOH . I 6 HOH A 65 465 68 HOH HOH . I 6 HOH A 66 466 111 HOH HOH . I 6 HOH A 67 467 45 HOH HOH . I 6 HOH A 68 468 131 HOH HOH . I 6 HOH A 69 469 97 HOH HOH . I 6 HOH A 70 470 67 HOH HOH . I 6 HOH A 71 471 49 HOH HOH . I 6 HOH A 72 472 146 HOH HOH . I 6 HOH A 73 473 90 HOH HOH . I 6 HOH A 74 474 31 HOH HOH . I 6 HOH A 75 475 114 HOH HOH . I 6 HOH A 76 476 93 HOH HOH . I 6 HOH A 77 477 101 HOH HOH . I 6 HOH A 78 478 87 HOH HOH . I 6 HOH A 79 479 126 HOH HOH . I 6 HOH A 80 480 74 HOH HOH . I 6 HOH A 81 481 79 HOH HOH . I 6 HOH A 82 482 29 HOH HOH . I 6 HOH A 83 483 84 HOH HOH . I 6 HOH A 84 484 102 HOH HOH . I 6 HOH A 85 485 18 HOH HOH . I 6 HOH A 86 486 37 HOH HOH . I 6 HOH A 87 487 44 HOH HOH . I 6 HOH A 88 488 145 HOH HOH . I 6 HOH A 89 489 91 HOH HOH . I 6 HOH A 90 490 130 HOH HOH . I 6 HOH A 91 491 85 HOH HOH . I 6 HOH A 92 492 112 HOH HOH . I 6 HOH A 93 493 89 HOH HOH . I 6 HOH A 94 494 132 HOH HOH . I 6 HOH A 95 495 98 HOH HOH . I 6 HOH A 96 496 80 HOH HOH . I 6 HOH A 97 497 40 HOH HOH . I 6 HOH A 98 498 56 HOH HOH . I 6 HOH A 99 499 13 HOH HOH . I 6 HOH A 100 500 73 HOH HOH . I 6 HOH A 101 501 51 HOH HOH . I 6 HOH A 102 502 78 HOH HOH . I 6 HOH A 103 503 1 HOH HOH . I 6 HOH A 104 504 147 HOH HOH . I 6 HOH A 105 505 115 HOH HOH . I 6 HOH A 106 506 110 HOH HOH . I 6 HOH A 107 507 15 HOH HOH . I 6 HOH A 108 508 95 HOH HOH . I 6 HOH A 109 509 122 HOH HOH . I 6 HOH A 110 510 121 HOH HOH . I 6 HOH A 111 511 137 HOH HOH . I 6 HOH A 112 512 6 HOH HOH . I 6 HOH A 113 513 133 HOH HOH . I 6 HOH A 114 514 43 HOH HOH . I 6 HOH A 115 515 125 HOH HOH . I 6 HOH A 116 516 148 HOH HOH . I 6 HOH A 117 517 82 HOH HOH . I 6 HOH A 118 518 52 HOH HOH . I 6 HOH A 119 519 92 HOH HOH . I 6 HOH A 120 520 135 HOH HOH . I 6 HOH A 121 521 9 HOH HOH . I 6 HOH A 122 522 76 HOH HOH . I 6 HOH A 123 523 19 HOH HOH . I 6 HOH A 124 524 143 HOH HOH . I 6 HOH A 125 525 144 HOH HOH . I 6 HOH A 126 526 142 HOH HOH . I 6 HOH A 127 527 63 HOH HOH . I 6 HOH A 128 528 66 HOH HOH . I 6 HOH A 129 529 77 HOH HOH . I 6 HOH A 130 530 96 HOH HOH . I 6 HOH A 131 531 106 HOH HOH . I 6 HOH A 132 532 108 HOH HOH . I 6 HOH A 133 533 129 HOH HOH . I 6 HOH A 134 534 139 HOH HOH . I 6 HOH A 135 535 10 HOH HOH . I 6 HOH A 136 536 62 HOH HOH . I 6 HOH A 137 537 64 HOH HOH . I 6 HOH A 138 538 94 HOH HOH . I 6 HOH A 139 539 28 HOH HOH . I 6 HOH A 140 540 136 HOH HOH . I 6 HOH A 141 541 107 HOH HOH . I 6 HOH A 142 542 123 HOH HOH . I 6 HOH A 143 543 140 HOH HOH . I 6 HOH A 144 544 124 HOH HOH . I 6 HOH A 145 545 128 HOH HOH . I 6 HOH A 146 546 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.431 _atom_site.Cartn_y -9.944 _atom_site.Cartn_z 4.788 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #