data_6EKP # _model_server_result.job_id zQOmlEQ3qIfyYxv-SAyIvw _model_server_result.datetime_utc '2024-11-14 13:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ekp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6EKP # _exptl.entry_id 6EKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.332 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXAHEPTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EKP _cell.length_a 55.035 _cell.length_b 63.123 _cell.length_c 64.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H26 O5' _chem_comp.formula_weight 250.332 _chem_comp.id P3G _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXAHEPTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 P3G sing 247 n n C5 H51 P3G sing 248 n n C5 H5 P3G sing 249 n n C5 H52 P3G sing 250 n n C6 O3 P3G sing 251 n n C6 H61 P3G sing 252 n n C6 H62 P3G sing 253 n n O3 C7 P3G sing 254 n n C7 C8 P3G sing 255 n n C7 H71 P3G sing 256 n n C7 H72 P3G sing 257 n n C8 O4 P3G sing 258 n n C8 H81 P3G sing 259 n n C8 H82 P3G sing 260 n n O4 C9 P3G sing 261 n n C9 C10 P3G sing 262 n n C9 H91 P3G sing 263 n n C9 H92 P3G sing 264 n n C10 O5 P3G sing 265 n n C10 H101 P3G sing 266 n n C10 H102 P3G sing 267 n n O5 C11 P3G sing 268 n n C11 C12 P3G sing 269 n n C11 H111 P3G sing 270 n n C11 H112 P3G sing 271 n n C12 O6 P3G sing 272 n n C12 H121 P3G sing 273 n n C12 H122 P3G sing 274 n n O6 C13 P3G sing 275 n n C13 C14 P3G sing 276 n n C13 H131 P3G sing 277 n n C13 H132 P3G sing 278 n n C14 O7 P3G sing 279 n n C14 H141 P3G sing 280 n n C14 H142 P3G sing 281 n n O7 C15 P3G sing 282 n n C15 C16 P3G sing 283 n n C15 H151 P3G sing 284 n n C15 H152 P3G sing 285 n n C16 H16 P3G sing 286 n n C16 H162 P3G sing 287 n n C16 H161 P3G sing 288 n n # _atom_sites.entry_id 6EKP _atom_sites.fract_transf_matrix[1][1] 0.01817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IAC A 1 201 120 IAC IAC . D 3 P3G A 1 202 1 P3G PEG . E 2 IAC B 1 201 120 IAC IAC . F 4 HOH A 1 301 185 HOH HOH . F 4 HOH A 2 302 206 HOH HOH . F 4 HOH A 3 303 119 HOH HOH . F 4 HOH A 4 304 229 HOH HOH . F 4 HOH A 5 305 211 HOH HOH . F 4 HOH A 6 306 208 HOH HOH . F 4 HOH A 7 307 160 HOH HOH . F 4 HOH A 8 308 63 HOH HOH . F 4 HOH A 9 309 65 HOH HOH . F 4 HOH A 10 310 107 HOH HOH . F 4 HOH A 11 311 87 HOH HOH . F 4 HOH A 12 312 54 HOH HOH . F 4 HOH A 13 313 233 HOH HOH . F 4 HOH A 14 314 180 HOH HOH . F 4 HOH A 15 315 6 HOH HOH . F 4 HOH A 16 316 11 HOH HOH . F 4 HOH A 17 317 15 HOH HOH . F 4 HOH A 18 318 190 HOH HOH . F 4 HOH A 19 319 53 HOH HOH . F 4 HOH A 20 320 189 HOH HOH . F 4 HOH A 21 321 3 HOH HOH . F 4 HOH A 22 322 77 HOH HOH . F 4 HOH A 23 323 67 HOH HOH . F 4 HOH A 24 324 71 HOH HOH . F 4 HOH A 25 325 224 HOH HOH . F 4 HOH A 26 326 138 HOH HOH . F 4 HOH A 27 327 245 HOH HOH . F 4 HOH A 28 328 152 HOH HOH . F 4 HOH A 29 329 236 HOH HOH . F 4 HOH A 30 330 38 HOH HOH . F 4 HOH A 31 331 4 HOH HOH . F 4 HOH A 32 332 43 HOH HOH . F 4 HOH A 33 333 5 HOH HOH . F 4 HOH A 34 334 98 HOH HOH . F 4 HOH A 35 335 101 HOH HOH . F 4 HOH A 36 336 51 HOH HOH . F 4 HOH A 37 337 164 HOH HOH . F 4 HOH A 38 338 158 HOH HOH . F 4 HOH A 39 339 21 HOH HOH . F 4 HOH A 40 340 217 HOH HOH . F 4 HOH A 41 341 30 HOH HOH . F 4 HOH A 42 342 23 HOH HOH . F 4 HOH A 43 343 85 HOH HOH . F 4 HOH A 44 344 88 HOH HOH . F 4 HOH A 45 345 13 HOH HOH . F 4 HOH A 46 346 34 HOH HOH . F 4 HOH A 47 347 28 HOH HOH . F 4 HOH A 48 348 26 HOH HOH . F 4 HOH A 49 349 97 HOH HOH . F 4 HOH A 50 350 102 HOH HOH . F 4 HOH A 51 351 178 HOH HOH . F 4 HOH A 52 352 139 HOH HOH . F 4 HOH A 53 353 52 HOH HOH . F 4 HOH A 54 354 80 HOH HOH . F 4 HOH A 55 355 42 HOH HOH . F 4 HOH A 56 356 196 HOH HOH . F 4 HOH A 57 357 47 HOH HOH . F 4 HOH A 58 358 155 HOH HOH . F 4 HOH A 59 359 127 HOH HOH . F 4 HOH A 60 360 165 HOH HOH . F 4 HOH A 61 361 227 HOH HOH . F 4 HOH A 62 362 8 HOH HOH . F 4 HOH A 63 363 209 HOH HOH . F 4 HOH A 64 364 93 HOH HOH . F 4 HOH A 65 365 35 HOH HOH . F 4 HOH A 66 366 143 HOH HOH . F 4 HOH A 67 367 170 HOH HOH . F 4 HOH A 68 368 184 HOH HOH . F 4 HOH A 69 369 81 HOH HOH . F 4 HOH A 70 370 9 HOH HOH . F 4 HOH A 71 371 14 HOH HOH . F 4 HOH A 72 372 115 HOH HOH . F 4 HOH A 73 373 235 HOH HOH . F 4 HOH A 74 374 133 HOH HOH . F 4 HOH A 75 375 126 HOH HOH . F 4 HOH A 76 376 58 HOH HOH . F 4 HOH A 77 377 156 HOH HOH . F 4 HOH A 78 378 173 HOH HOH . F 4 HOH A 79 379 106 HOH HOH . F 4 HOH A 80 380 210 HOH HOH . F 4 HOH A 81 381 163 HOH HOH . F 4 HOH A 82 382 25 HOH HOH . F 4 HOH A 83 383 129 HOH HOH . F 4 HOH A 84 384 195 HOH HOH . F 4 HOH A 85 385 109 HOH HOH . F 4 HOH A 86 386 116 HOH HOH . F 4 HOH A 87 387 183 HOH HOH . F 4 HOH A 88 388 161 HOH HOH . F 4 HOH A 89 389 16 HOH HOH . F 4 HOH A 90 390 124 HOH HOH . F 4 HOH A 91 391 64 HOH HOH . F 4 HOH A 92 392 218 HOH HOH . F 4 HOH A 93 393 40 HOH HOH . F 4 HOH A 94 394 240 HOH HOH . F 4 HOH A 95 395 117 HOH HOH . F 4 HOH A 96 396 149 HOH HOH . F 4 HOH A 97 397 39 HOH HOH . F 4 HOH A 98 398 108 HOH HOH . F 4 HOH A 99 399 238 HOH HOH . F 4 HOH A 100 400 215 HOH HOH . F 4 HOH A 101 401 147 HOH HOH . F 4 HOH A 102 402 197 HOH HOH . F 4 HOH A 103 403 86 HOH HOH . F 4 HOH A 104 404 159 HOH HOH . F 4 HOH A 105 405 91 HOH HOH . F 4 HOH A 106 406 69 HOH HOH . F 4 HOH A 107 407 120 HOH HOH . F 4 HOH A 108 408 135 HOH HOH . F 4 HOH A 109 409 118 HOH HOH . F 4 HOH A 110 410 179 HOH HOH . F 4 HOH A 111 411 168 HOH HOH . F 4 HOH A 112 412 154 HOH HOH . F 4 HOH A 113 413 17 HOH HOH . F 4 HOH A 114 414 177 HOH HOH . F 4 HOH A 115 415 162 HOH HOH . F 4 HOH A 116 416 199 HOH HOH . F 4 HOH A 117 417 169 HOH HOH . G 4 HOH B 1 301 198 HOH HOH . G 4 HOH B 2 302 153 HOH HOH . G 4 HOH B 3 303 249 HOH HOH . G 4 HOH B 4 304 114 HOH HOH . G 4 HOH B 5 305 182 HOH HOH . G 4 HOH B 6 306 213 HOH HOH . G 4 HOH B 7 307 232 HOH HOH . G 4 HOH B 8 308 68 HOH HOH . G 4 HOH B 9 309 222 HOH HOH . G 4 HOH B 10 310 59 HOH HOH . G 4 HOH B 11 311 48 HOH HOH . G 4 HOH B 12 312 94 HOH HOH . G 4 HOH B 13 313 60 HOH HOH . G 4 HOH B 14 314 22 HOH HOH . G 4 HOH B 15 315 1 HOH HOH . G 4 HOH B 16 316 201 HOH HOH . G 4 HOH B 17 317 207 HOH HOH . G 4 HOH B 18 318 19 HOH HOH . G 4 HOH B 19 319 228 HOH HOH . G 4 HOH B 20 320 70 HOH HOH . G 4 HOH B 21 321 27 HOH HOH . G 4 HOH B 22 322 100 HOH HOH . G 4 HOH B 23 323 226 HOH HOH . G 4 HOH B 24 324 125 HOH HOH . G 4 HOH B 25 325 148 HOH HOH . G 4 HOH B 26 326 46 HOH HOH . G 4 HOH B 27 327 130 HOH HOH . G 4 HOH B 28 328 186 HOH HOH . G 4 HOH B 29 329 57 HOH HOH . G 4 HOH B 30 330 50 HOH HOH . G 4 HOH B 31 331 104 HOH HOH . G 4 HOH B 32 332 220 HOH HOH . G 4 HOH B 33 333 20 HOH HOH . G 4 HOH B 34 334 92 HOH HOH . G 4 HOH B 35 335 246 HOH HOH . G 4 HOH B 36 336 141 HOH HOH . G 4 HOH B 37 337 10 HOH HOH . G 4 HOH B 38 338 55 HOH HOH . G 4 HOH B 39 339 84 HOH HOH . G 4 HOH B 40 340 2 HOH HOH . G 4 HOH B 41 341 41 HOH HOH . G 4 HOH B 42 342 76 HOH HOH . G 4 HOH B 43 343 216 HOH HOH . G 4 HOH B 44 344 31 HOH HOH . G 4 HOH B 45 345 122 HOH HOH . G 4 HOH B 46 346 66 HOH HOH . G 4 HOH B 47 347 32 HOH HOH . G 4 HOH B 48 348 33 HOH HOH . G 4 HOH B 49 349 49 HOH HOH . G 4 HOH B 50 350 75 HOH HOH . G 4 HOH B 51 351 128 HOH HOH . G 4 HOH B 52 352 45 HOH HOH . G 4 HOH B 53 353 192 HOH HOH . G 4 HOH B 54 354 194 HOH HOH . G 4 HOH B 55 355 37 HOH HOH . G 4 HOH B 56 356 18 HOH HOH . G 4 HOH B 57 357 36 HOH HOH . G 4 HOH B 58 358 244 HOH HOH . G 4 HOH B 59 359 73 HOH HOH . G 4 HOH B 60 360 188 HOH HOH . G 4 HOH B 61 361 136 HOH HOH . G 4 HOH B 62 362 56 HOH HOH . G 4 HOH B 63 363 176 HOH HOH . G 4 HOH B 64 364 44 HOH HOH . G 4 HOH B 65 365 61 HOH HOH . G 4 HOH B 66 366 24 HOH HOH . G 4 HOH B 67 367 7 HOH HOH . G 4 HOH B 68 368 96 HOH HOH . G 4 HOH B 69 369 110 HOH HOH . G 4 HOH B 70 370 166 HOH HOH . G 4 HOH B 71 371 103 HOH HOH . G 4 HOH B 72 372 132 HOH HOH . G 4 HOH B 73 373 89 HOH HOH . G 4 HOH B 74 374 83 HOH HOH . G 4 HOH B 75 375 221 HOH HOH . G 4 HOH B 76 376 144 HOH HOH . G 4 HOH B 77 377 157 HOH HOH . G 4 HOH B 78 378 150 HOH HOH . G 4 HOH B 79 379 203 HOH HOH . G 4 HOH B 80 380 62 HOH HOH . G 4 HOH B 81 381 145 HOH HOH . G 4 HOH B 82 382 134 HOH HOH . G 4 HOH B 83 383 247 HOH HOH . G 4 HOH B 84 384 105 HOH HOH . G 4 HOH B 85 385 223 HOH HOH . G 4 HOH B 86 386 212 HOH HOH . G 4 HOH B 87 387 12 HOH HOH . G 4 HOH B 88 388 237 HOH HOH . G 4 HOH B 89 389 167 HOH HOH . G 4 HOH B 90 390 250 HOH HOH . G 4 HOH B 91 391 146 HOH HOH . G 4 HOH B 92 392 239 HOH HOH . G 4 HOH B 93 393 123 HOH HOH . G 4 HOH B 94 394 234 HOH HOH . G 4 HOH B 95 395 142 HOH HOH . G 4 HOH B 96 396 78 HOH HOH . G 4 HOH B 97 397 205 HOH HOH . G 4 HOH B 98 398 29 HOH HOH . G 4 HOH B 99 399 90 HOH HOH . G 4 HOH B 100 400 151 HOH HOH . G 4 HOH B 101 401 111 HOH HOH . G 4 HOH B 102 402 174 HOH HOH . G 4 HOH B 103 403 248 HOH HOH . G 4 HOH B 104 404 112 HOH HOH . G 4 HOH B 105 405 131 HOH HOH . G 4 HOH B 106 406 202 HOH HOH . G 4 HOH B 107 407 140 HOH HOH . G 4 HOH B 108 408 243 HOH HOH . G 4 HOH B 109 409 82 HOH HOH . G 4 HOH B 110 410 214 HOH HOH . G 4 HOH B 111 411 79 HOH HOH . G 4 HOH B 112 412 204 HOH HOH . G 4 HOH B 113 413 172 HOH HOH . G 4 HOH B 114 414 171 HOH HOH . G 4 HOH B 115 415 175 HOH HOH . G 4 HOH B 116 416 231 HOH HOH . G 4 HOH B 117 417 113 HOH HOH . G 4 HOH B 118 418 137 HOH HOH . G 4 HOH B 119 419 99 HOH HOH . G 4 HOH B 120 420 225 HOH HOH . G 4 HOH B 121 421 193 HOH HOH . G 4 HOH B 122 422 72 HOH HOH . G 4 HOH B 123 423 187 HOH HOH . G 4 HOH B 124 424 191 HOH HOH . G 4 HOH B 125 425 219 HOH HOH . G 4 HOH B 126 426 230 HOH HOH . G 4 HOH B 127 427 200 HOH HOH . G 4 HOH B 128 428 181 HOH HOH . G 4 HOH B 129 429 121 HOH HOH . G 4 HOH B 130 430 242 HOH HOH . G 4 HOH B 131 431 95 HOH HOH . G 4 HOH B 132 432 241 HOH HOH . G 4 HOH B 133 433 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 P3G . . . D 3 10.145 -14.777 -19.869 1 40.73 ? C6 P3G 202 A 1 HETATM 2 O O3 P3G . . . D 3 11.189 -15.533 -19.323 1 51.16 ? O3 P3G 202 A 1 HETATM 3 C C7 P3G . . . D 3 11.613 -15.073 -18.073 1 29.13 ? C7 P3G 202 A 1 HETATM 4 C C8 P3G . . . D 3 12.484 -16.134 -17.401 1 46.98 ? C8 P3G 202 A 1 HETATM 5 O O4 P3G . . . D 3 12.753 -15.727 -16.086 1 36.91 ? O4 P3G 202 A 1 HETATM 6 C C9 P3G . . . D 3 13.102 -14.378 -15.971 1 24.49 ? C9 P3G 202 A 1 HETATM 7 C C10 P3G . . . D 3 13.648 -14.131 -14.572 1 26.82 ? C10 P3G 202 A 1 HETATM 8 O O5 P3G . . . D 3 14.256 -12.869 -14.545 1 34.58 ? O5 P3G 202 A 1 HETATM 9 C C11 P3G . . . D 3 14.914 -12.533 -15.734 1 20.37 ? C11 P3G 202 A 1 HETATM 10 C C12 P3G . . . D 3 15.465 -11.118 -15.591 1 29.91 ? C12 P3G 202 A 1 HETATM 11 O O6 P3G . . . D 3 15.799 -10.643 -16.867 1 61.87 ? O6 P3G 202 A 1 HETATM 12 C C13 P3G . . . D 3 16.705 -11.456 -17.558 1 50.19 ? C13 P3G 202 A 1 HETATM 13 C C14 P3G . . . D 3 16.874 -10.917 -18.976 1 58.98 ? C14 P3G 202 A 1 HETATM 14 O O7 P3G . . . D 3 17.805 -11.715 -19.653 1 65.09 ? O7 P3G 202 A 1 HETATM 15 C C15 P3G . . . D 3 18.552 -12.562 -18.828 1 78.66 ? C15 P3G 202 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #