data_6ELY # _model_server_result.job_id z1b4OO_hEa4UG1yTClEbzg _model_server_result.datetime_utc '2024-11-24 22:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ely # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":323}' # _entry.id 6ELY # _exptl.entry_id 6ELY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ELY _cell.length_a 106.677 _cell.length_b 106.677 _cell.length_c 312.569 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ELY _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 T N N ? 9 MA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 GLA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 3 NAG 3 n C NAG 2 C 2 NAG C 8 NAG 4 n D NAG 1 D 1 NAG C 5 NAG 4 n D NAG 2 D 2 NAG C 6 NAG 4 n D GLA 3 D 3 GLA G 1 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 247 A CYS 247 1_555 B SG CYS 5 B CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 B SG CYS 64 B CYS 64 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf3 B SG CYS 152 B CYS 152 1_555 B SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf4 B SG CYS 191 B CYS 191 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? covale ? covale1 A ND2 ASN 112 A ASN 112 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 61 B ASN 61 1_555 V C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 B ND2 ASN 96 B ASN 96 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B ND2 ASN 136 B ASN 136 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 GLA . D GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 168 n n N H GLY sing 169 n n N H2 GLY sing 170 n n CA C GLY sing 171 n n CA HA2 GLY sing 172 n n CA HA3 GLY sing 173 n n C O GLY doub 174 n n C OXT GLY sing 175 n n OXT HXT GLY sing 176 n n # _atom_sites.entry_id 6ELY _atom_sites.fract_transf_matrix[1][1] 0.009374 _atom_sites.fract_transf_matrix[1][2] 0.005412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 1 NAG NAG . F 6 CL A 1 302 4 CL CL . G 6 CL A 1 303 21 CL CL . H 6 CL A 1 304 29 CL CL . I 6 CL A 1 305 35 CL CL . J 6 CL A 1 306 36 CL CL . K 7 SO4 A 1 307 3 SO4 SO4 . L 7 SO4 A 1 308 4 SO4 SO4 . M 7 SO4 A 1 309 5 SO4 SO4 . N 7 SO4 A 1 310 6 SO4 SO4 . O 7 SO4 A 1 311 7 SO4 SO4 . P 8 GOL A 1 312 3 GOL GOL . Q 8 GOL A 1 313 5 GOL GOL . R 8 GOL A 1 314 13 GOL GOL . S 8 GOL A 1 315 18 GOL GOL . T 9 GLY A 1 316 2 GLY GLY . U 10 BFW A 1 317 1 BFW FC4 . V 5 NAG B 1 301 2 NAG NAG . W 6 CL B 1 307 17 CL CL . X 6 CL B 1 308 32 CL CL . Y 6 CL B 1 309 33 CL CL . Z 8 GOL B 1 310 2 GOL GOL . AA 8 GOL B 1 311 4 GOL GOL . BA 8 GOL B 1 312 6 GOL GOL . CA 8 GOL B 1 313 7 GOL GOL . DA 8 GOL B 1 314 8 GOL GOL . EA 8 GOL B 1 315 9 GOL GOL . FA 8 GOL B 1 316 10 GOL GOL . GA 8 GOL B 1 317 11 GOL GOL . HA 8 GOL B 1 318 12 GOL GOL . IA 8 GOL B 1 319 14 GOL GOL . JA 8 GOL B 1 320 15 GOL GOL . KA 8 GOL B 1 321 16 GOL GOL . LA 8 GOL B 1 322 17 GOL GOL . MA 9 GLY B 1 323 1 GLY GLY . NA 11 HOH A 1 401 245 HOH HOH . NA 11 HOH A 2 402 237 HOH HOH . NA 11 HOH A 3 403 11 HOH HOH . NA 11 HOH A 4 404 235 HOH HOH . NA 11 HOH A 5 405 134 HOH HOH . NA 11 HOH A 6 406 283 HOH HOH . NA 11 HOH A 7 407 122 HOH HOH . NA 11 HOH A 8 408 13 HOH HOH . NA 11 HOH A 9 409 292 HOH HOH . NA 11 HOH A 10 410 297 HOH HOH . NA 11 HOH A 11 411 246 HOH HOH . NA 11 HOH A 12 412 106 HOH HOH . NA 11 HOH A 13 413 127 HOH HOH . NA 11 HOH A 14 414 9 HOH HOH . NA 11 HOH A 15 415 16 HOH HOH . NA 11 HOH A 16 416 22 HOH HOH . NA 11 HOH A 17 417 167 HOH HOH . NA 11 HOH A 18 418 104 HOH HOH . NA 11 HOH A 19 419 15 HOH HOH . NA 11 HOH A 20 420 159 HOH HOH . NA 11 HOH A 21 421 67 HOH HOH . NA 11 HOH A 22 422 236 HOH HOH . NA 11 HOH A 23 423 76 HOH HOH . NA 11 HOH A 24 424 4 HOH HOH . NA 11 HOH A 25 425 74 HOH HOH . NA 11 HOH A 26 426 61 HOH HOH . NA 11 HOH A 27 427 60 HOH HOH . NA 11 HOH A 28 428 8 HOH HOH . NA 11 HOH A 29 429 163 HOH HOH . NA 11 HOH A 30 430 306 HOH HOH . NA 11 HOH A 31 431 299 HOH HOH . NA 11 HOH A 32 432 101 HOH HOH . NA 11 HOH A 33 433 302 HOH HOH . NA 11 HOH A 34 434 231 HOH HOH . NA 11 HOH A 35 435 6 HOH HOH . NA 11 HOH A 36 436 129 HOH HOH . NA 11 HOH A 37 437 126 HOH HOH . NA 11 HOH A 38 438 118 HOH HOH . NA 11 HOH A 39 439 227 HOH HOH . NA 11 HOH A 40 440 100 HOH HOH . NA 11 HOH A 41 441 181 HOH HOH . NA 11 HOH A 42 442 41 HOH HOH . NA 11 HOH A 43 443 300 HOH HOH . NA 11 HOH A 44 444 62 HOH HOH . NA 11 HOH A 45 445 87 HOH HOH . NA 11 HOH A 46 446 166 HOH HOH . NA 11 HOH A 47 447 1 HOH HOH . NA 11 HOH A 48 448 224 HOH HOH . NA 11 HOH A 49 449 229 HOH HOH . NA 11 HOH A 50 450 247 HOH HOH . NA 11 HOH A 51 451 107 HOH HOH . NA 11 HOH A 52 452 84 HOH HOH . NA 11 HOH A 53 453 298 HOH HOH . NA 11 HOH A 54 454 180 HOH HOH . NA 11 HOH A 55 455 114 HOH HOH . NA 11 HOH A 56 456 226 HOH HOH . NA 11 HOH A 57 457 293 HOH HOH . NA 11 HOH A 58 458 152 HOH HOH . NA 11 HOH A 59 459 238 HOH HOH . NA 11 HOH A 60 460 239 HOH HOH . NA 11 HOH A 61 461 295 HOH HOH . NA 11 HOH A 62 462 234 HOH HOH . NA 11 HOH A 63 463 79 HOH HOH . NA 11 HOH A 64 464 303 HOH HOH . NA 11 HOH A 65 465 296 HOH HOH . OA 11 HOH B 1 401 248 HOH HOH . OA 11 HOH B 2 402 184 HOH HOH . OA 11 HOH B 3 403 285 HOH HOH . OA 11 HOH B 4 404 51 HOH HOH . OA 11 HOH B 5 405 33 HOH HOH . OA 11 HOH B 6 406 230 HOH HOH . OA 11 HOH B 7 407 31 HOH HOH . OA 11 HOH B 8 408 39 HOH HOH . OA 11 HOH B 9 409 192 HOH HOH . OA 11 HOH B 10 410 187 HOH HOH . OA 11 HOH B 11 411 178 HOH HOH . OA 11 HOH B 12 412 17 HOH HOH . OA 11 HOH B 13 413 42 HOH HOH . OA 11 HOH B 14 414 213 HOH HOH . OA 11 HOH B 15 415 45 HOH HOH . OA 11 HOH B 16 416 261 HOH HOH . OA 11 HOH B 17 417 35 HOH HOH . OA 11 HOH B 18 418 53 HOH HOH . OA 11 HOH B 19 419 251 HOH HOH . OA 11 HOH B 20 420 44 HOH HOH . OA 11 HOH B 21 421 40 HOH HOH . OA 11 HOH B 22 422 47 HOH HOH . OA 11 HOH B 23 423 162 HOH HOH . OA 11 HOH B 24 424 199 HOH HOH . OA 11 HOH B 25 425 183 HOH HOH . OA 11 HOH B 26 426 185 HOH HOH . OA 11 HOH B 27 427 49 HOH HOH . OA 11 HOH B 28 428 52 HOH HOH . OA 11 HOH B 29 429 28 HOH HOH . OA 11 HOH B 30 430 46 HOH HOH . OA 11 HOH B 31 431 215 HOH HOH . OA 11 HOH B 32 432 29 HOH HOH . OA 11 HOH B 33 433 32 HOH HOH . OA 11 HOH B 34 434 212 HOH HOH . OA 11 HOH B 35 435 221 HOH HOH . OA 11 HOH B 36 436 48 HOH HOH . OA 11 HOH B 37 437 43 HOH HOH . OA 11 HOH B 38 438 250 HOH HOH . OA 11 HOH B 39 439 55 HOH HOH . OA 11 HOH B 40 440 174 HOH HOH . OA 11 HOH B 41 441 222 HOH HOH . OA 11 HOH B 42 442 56 HOH HOH . OA 11 HOH B 43 443 23 HOH HOH . OA 11 HOH B 44 444 255 HOH HOH . OA 11 HOH B 45 445 249 HOH HOH . OA 11 HOH B 46 446 254 HOH HOH . OA 11 HOH B 47 447 284 HOH HOH . OA 11 HOH B 48 448 54 HOH HOH . OA 11 HOH B 49 449 216 HOH HOH . OA 11 HOH B 50 450 208 HOH HOH . OA 11 HOH B 51 451 191 HOH HOH . OA 11 HOH B 52 452 204 HOH HOH . OA 11 HOH B 53 453 305 HOH HOH . OA 11 HOH B 54 454 197 HOH HOH . OA 11 HOH B 55 455 304 HOH HOH . OA 11 HOH B 56 456 5 HOH HOH . OA 11 HOH B 57 457 189 HOH HOH . OA 11 HOH B 58 458 26 HOH HOH . OA 11 HOH B 59 459 193 HOH HOH . OA 11 HOH B 60 460 301 HOH HOH . OA 11 HOH B 61 461 210 HOH HOH . OA 11 HOH B 62 462 232 HOH HOH . OA 11 HOH B 63 463 211 HOH HOH . OA 11 HOH B 64 464 21 HOH HOH . OA 11 HOH B 65 465 27 HOH HOH . OA 11 HOH B 66 466 217 HOH HOH . OA 11 HOH B 67 467 34 HOH HOH . OA 11 HOH B 68 468 57 HOH HOH . OA 11 HOH B 69 469 139 HOH HOH . OA 11 HOH B 70 470 50 HOH HOH . OA 11 HOH B 71 471 253 HOH HOH . OA 11 HOH B 72 472 63 HOH HOH . OA 11 HOH B 73 473 188 HOH HOH . OA 11 HOH B 74 474 291 HOH HOH . OA 11 HOH B 75 475 179 HOH HOH . OA 11 HOH B 76 476 289 HOH HOH . OA 11 HOH B 77 477 73 HOH HOH . OA 11 HOH B 78 478 290 HOH HOH . OA 11 HOH B 79 479 288 HOH HOH . OA 11 HOH B 80 480 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . MA 9 -9.769 43.359 104.717 1 79.8 ? N GLY 323 B 1 HETATM 2 C CA GLY . . . MA 9 -9.582 41.867 104.598 1 86.83 ? CA GLY 323 B 1 HETATM 3 C C GLY . . . MA 9 -9.069 41.159 105.859 1 80.47 ? C GLY 323 B 1 HETATM 4 O O GLY . . . MA 9 -7.866 40.986 106.084 1 71.14 ? O GLY 323 B 1 HETATM 5 O OXT GLY . . . MA 9 -9.85 40.725 106.702 1 64.34 ? OXT GLY 323 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #