data_6EMA # _model_server_result.job_id BRsLPPddHMPHmari9MS3WQ _model_server_result.datetime_utc '2024-10-13 02:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ema # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6EMA # _exptl.entry_id 6EMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EMA _cell.length_a 68.86 _cell.length_b 73.433 _cell.length_c 76.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EMA _atom_sites.fract_transf_matrix[1][1] 0.014522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 401 1 ATP ATP . D 4 RIP C 1 101 1 RIP RIB . E 5 HOH A 1 501 111 HOH HOH . E 5 HOH A 2 502 83 HOH HOH . E 5 HOH A 3 503 21 HOH HOH . E 5 HOH A 4 504 91 HOH HOH . E 5 HOH A 5 505 47 HOH HOH . E 5 HOH A 6 506 75 HOH HOH . E 5 HOH A 7 507 3 HOH HOH . E 5 HOH A 8 508 46 HOH HOH . E 5 HOH A 9 509 76 HOH HOH . E 5 HOH A 10 510 54 HOH HOH . E 5 HOH A 11 511 99 HOH HOH . E 5 HOH A 12 512 26 HOH HOH . E 5 HOH A 13 513 50 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 53 HOH HOH . E 5 HOH A 16 516 52 HOH HOH . E 5 HOH A 17 517 42 HOH HOH . E 5 HOH A 18 518 104 HOH HOH . E 5 HOH A 19 519 45 HOH HOH . E 5 HOH A 20 520 22 HOH HOH . E 5 HOH A 21 521 17 HOH HOH . E 5 HOH A 22 522 72 HOH HOH . E 5 HOH A 23 523 126 HOH HOH . E 5 HOH A 24 524 8 HOH HOH . E 5 HOH A 25 525 19 HOH HOH . E 5 HOH A 26 526 66 HOH HOH . E 5 HOH A 27 527 43 HOH HOH . E 5 HOH A 28 528 57 HOH HOH . E 5 HOH A 29 529 5 HOH HOH . E 5 HOH A 30 530 36 HOH HOH . E 5 HOH A 31 531 103 HOH HOH . E 5 HOH A 32 532 69 HOH HOH . E 5 HOH A 33 533 16 HOH HOH . E 5 HOH A 34 534 4 HOH HOH . E 5 HOH A 35 535 95 HOH HOH . E 5 HOH A 36 536 6 HOH HOH . E 5 HOH A 37 537 35 HOH HOH . E 5 HOH A 38 538 118 HOH HOH . E 5 HOH A 39 539 41 HOH HOH . E 5 HOH A 40 540 25 HOH HOH . E 5 HOH A 41 541 62 HOH HOH . E 5 HOH A 42 542 28 HOH HOH . E 5 HOH A 43 543 2 HOH HOH . E 5 HOH A 44 544 78 HOH HOH . E 5 HOH A 45 545 20 HOH HOH . E 5 HOH A 46 546 7 HOH HOH . E 5 HOH A 47 547 15 HOH HOH . E 5 HOH A 48 548 9 HOH HOH . E 5 HOH A 49 549 127 HOH HOH . E 5 HOH A 50 550 80 HOH HOH . E 5 HOH A 51 551 56 HOH HOH . E 5 HOH A 52 552 31 HOH HOH . E 5 HOH A 53 553 39 HOH HOH . E 5 HOH A 54 554 12 HOH HOH . E 5 HOH A 55 555 82 HOH HOH . E 5 HOH A 56 556 27 HOH HOH . E 5 HOH A 57 557 60 HOH HOH . E 5 HOH A 58 558 88 HOH HOH . E 5 HOH A 59 559 10 HOH HOH . E 5 HOH A 60 560 125 HOH HOH . E 5 HOH A 61 561 74 HOH HOH . E 5 HOH A 62 562 40 HOH HOH . E 5 HOH A 63 563 79 HOH HOH . E 5 HOH A 64 564 65 HOH HOH . E 5 HOH A 65 565 110 HOH HOH . E 5 HOH A 66 566 61 HOH HOH . E 5 HOH A 67 567 92 HOH HOH . E 5 HOH A 68 568 32 HOH HOH . E 5 HOH A 69 569 23 HOH HOH . E 5 HOH A 70 570 37 HOH HOH . E 5 HOH A 71 571 116 HOH HOH . E 5 HOH A 72 572 51 HOH HOH . E 5 HOH A 73 573 67 HOH HOH . E 5 HOH A 74 574 114 HOH HOH . E 5 HOH A 75 575 63 HOH HOH . E 5 HOH A 76 576 87 HOH HOH . E 5 HOH A 77 577 107 HOH HOH . E 5 HOH A 78 578 101 HOH HOH . E 5 HOH A 79 579 59 HOH HOH . E 5 HOH A 80 580 100 HOH HOH . E 5 HOH A 81 581 24 HOH HOH . E 5 HOH A 82 582 77 HOH HOH . E 5 HOH A 83 583 29 HOH HOH . E 5 HOH A 84 584 97 HOH HOH . E 5 HOH A 85 585 73 HOH HOH . E 5 HOH A 86 586 113 HOH HOH . E 5 HOH A 87 587 44 HOH HOH . E 5 HOH A 88 588 13 HOH HOH . E 5 HOH A 89 589 38 HOH HOH . E 5 HOH A 90 590 18 HOH HOH . E 5 HOH A 91 591 86 HOH HOH . E 5 HOH A 92 592 115 HOH HOH . E 5 HOH A 93 593 11 HOH HOH . E 5 HOH A 94 594 34 HOH HOH . E 5 HOH A 95 595 96 HOH HOH . E 5 HOH A 96 596 98 HOH HOH . E 5 HOH A 97 597 122 HOH HOH . E 5 HOH A 98 598 58 HOH HOH . E 5 HOH A 99 599 123 HOH HOH . E 5 HOH A 100 600 81 HOH HOH . E 5 HOH A 101 601 71 HOH HOH . E 5 HOH A 102 602 128 HOH HOH . E 5 HOH A 103 603 85 HOH HOH . E 5 HOH A 104 604 109 HOH HOH . E 5 HOH A 105 605 93 HOH HOH . E 5 HOH A 106 606 94 HOH HOH . E 5 HOH A 107 607 106 HOH HOH . F 5 HOH C 1 201 48 HOH HOH . F 5 HOH C 2 202 120 HOH HOH . F 5 HOH C 3 203 1 HOH HOH . F 5 HOH C 4 204 105 HOH HOH . F 5 HOH C 5 205 108 HOH HOH . F 5 HOH C 6 206 70 HOH HOH . F 5 HOH C 7 207 64 HOH HOH . F 5 HOH C 8 208 121 HOH HOH . F 5 HOH C 9 209 30 HOH HOH . F 5 HOH C 10 210 124 HOH HOH . F 5 HOH C 11 211 102 HOH HOH . F 5 HOH C 12 212 119 HOH HOH . F 5 HOH C 13 213 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ATP . . . C 3 5.971 13.958 9.18 1 34.19 ? O5' ATP 401 A 1 HETATM 2 C C5' ATP . . . C 3 4.965 12.966 9.037 1 32.73 ? C5' ATP 401 A 1 HETATM 3 C C4' ATP . . . C 3 5.537 11.567 9.121 1 34.46 ? C4' ATP 401 A 1 HETATM 4 O O4' ATP . . . C 3 6.389 11.3 7.97 1 32.8 ? O4' ATP 401 A 1 HETATM 5 C C3' ATP . . . C 3 6.436 11.284 10.313 1 35.43 ? C3' ATP 401 A 1 HETATM 6 O O3' ATP . . . C 3 5.709 11.026 11.509 1 37.64 ? O3' ATP 401 A 1 HETATM 7 C C2' ATP . . . C 3 7.256 10.1 9.824 1 31.3 ? C2' ATP 401 A 1 HETATM 8 O O2' ATP . . . C 3 6.476 8.913 9.868 1 27.1 ? O2' ATP 401 A 1 HETATM 9 C C1' ATP . . . C 3 7.464 10.469 8.351 1 29.63 ? C1' ATP 401 A 1 HETATM 10 N N9 ATP . . . C 3 8.72 11.218 8.126 1 24.31 ? N9 ATP 401 A 1 HETATM 11 C C8 ATP . . . C 3 8.827 12.564 8.132 1 23.47 ? C8 ATP 401 A 1 HETATM 12 N N7 ATP . . . C 3 10.092 12.965 7.886 1 22.04 ? N7 ATP 401 A 1 HETATM 13 C C5 ATP . . . C 3 10.816 11.839 7.702 1 21.78 ? C5 ATP 401 A 1 HETATM 14 C C6 ATP . . . C 3 12.229 11.539 7.399 1 21.46 ? C6 ATP 401 A 1 HETATM 15 N N6 ATP . . . C 3 13.121 12.545 7.243 1 22.22 ? N6 ATP 401 A 1 HETATM 16 N N1 ATP . . . C 3 12.592 10.239 7.29 1 21.4 ? N1 ATP 401 A 1 HETATM 17 C C2 ATP . . . C 3 11.703 9.244 7.454 1 20.59 ? C2 ATP 401 A 1 HETATM 18 N N3 ATP . . . C 3 10.399 9.441 7.725 1 20.79 ? N3 ATP 401 A 1 HETATM 19 C C4 ATP . . . C 3 9.911 10.697 7.861 1 21.38 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #