data_6EMA
#
_model_server_result.job_id            sRXZ-JVK9kh1vNDzXNuxNg 
_model_server_result.datetime_utc      '2024-11-27 23:24:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ema 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6EMA 
#
_exptl.entry_id    6EMA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6EMA 
_cell.length_a            68.86 
_cell.length_b            73.433 
_cell.length_c            76.94 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EMA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6EMA 
_atom_sites.fract_transf_matrix[1][1]    0.014522 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012997 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP A 1 401 1 ATP ATP . 
D 4 RIP C 1 101 1 RIP RIB . 
E 5 HOH A 1 501 111 HOH HOH . 
E 5 HOH A 2 502 83 HOH HOH . 
E 5 HOH A 3 503 21 HOH HOH . 
E 5 HOH A 4 504 91 HOH HOH . 
E 5 HOH A 5 505 47 HOH HOH . 
E 5 HOH A 6 506 75 HOH HOH . 
E 5 HOH A 7 507 3 HOH HOH . 
E 5 HOH A 8 508 46 HOH HOH . 
E 5 HOH A 9 509 76 HOH HOH . 
E 5 HOH A 10 510 54 HOH HOH . 
E 5 HOH A 11 511 99 HOH HOH . 
E 5 HOH A 12 512 26 HOH HOH . 
E 5 HOH A 13 513 50 HOH HOH . 
E 5 HOH A 14 514 14 HOH HOH . 
E 5 HOH A 15 515 53 HOH HOH . 
E 5 HOH A 16 516 52 HOH HOH . 
E 5 HOH A 17 517 42 HOH HOH . 
E 5 HOH A 18 518 104 HOH HOH . 
E 5 HOH A 19 519 45 HOH HOH . 
E 5 HOH A 20 520 22 HOH HOH . 
E 5 HOH A 21 521 17 HOH HOH . 
E 5 HOH A 22 522 72 HOH HOH . 
E 5 HOH A 23 523 126 HOH HOH . 
E 5 HOH A 24 524 8 HOH HOH . 
E 5 HOH A 25 525 19 HOH HOH . 
E 5 HOH A 26 526 66 HOH HOH . 
E 5 HOH A 27 527 43 HOH HOH . 
E 5 HOH A 28 528 57 HOH HOH . 
E 5 HOH A 29 529 5 HOH HOH . 
E 5 HOH A 30 530 36 HOH HOH . 
E 5 HOH A 31 531 103 HOH HOH . 
E 5 HOH A 32 532 69 HOH HOH . 
E 5 HOH A 33 533 16 HOH HOH . 
E 5 HOH A 34 534 4 HOH HOH . 
E 5 HOH A 35 535 95 HOH HOH . 
E 5 HOH A 36 536 6 HOH HOH . 
E 5 HOH A 37 537 35 HOH HOH . 
E 5 HOH A 38 538 118 HOH HOH . 
E 5 HOH A 39 539 41 HOH HOH . 
E 5 HOH A 40 540 25 HOH HOH . 
E 5 HOH A 41 541 62 HOH HOH . 
E 5 HOH A 42 542 28 HOH HOH . 
E 5 HOH A 43 543 2 HOH HOH . 
E 5 HOH A 44 544 78 HOH HOH . 
E 5 HOH A 45 545 20 HOH HOH . 
E 5 HOH A 46 546 7 HOH HOH . 
E 5 HOH A 47 547 15 HOH HOH . 
E 5 HOH A 48 548 9 HOH HOH . 
E 5 HOH A 49 549 127 HOH HOH . 
E 5 HOH A 50 550 80 HOH HOH . 
E 5 HOH A 51 551 56 HOH HOH . 
E 5 HOH A 52 552 31 HOH HOH . 
E 5 HOH A 53 553 39 HOH HOH . 
E 5 HOH A 54 554 12 HOH HOH . 
E 5 HOH A 55 555 82 HOH HOH . 
E 5 HOH A 56 556 27 HOH HOH . 
E 5 HOH A 57 557 60 HOH HOH . 
E 5 HOH A 58 558 88 HOH HOH . 
E 5 HOH A 59 559 10 HOH HOH . 
E 5 HOH A 60 560 125 HOH HOH . 
E 5 HOH A 61 561 74 HOH HOH . 
E 5 HOH A 62 562 40 HOH HOH . 
E 5 HOH A 63 563 79 HOH HOH . 
E 5 HOH A 64 564 65 HOH HOH . 
E 5 HOH A 65 565 110 HOH HOH . 
E 5 HOH A 66 566 61 HOH HOH . 
E 5 HOH A 67 567 92 HOH HOH . 
E 5 HOH A 68 568 32 HOH HOH . 
E 5 HOH A 69 569 23 HOH HOH . 
E 5 HOH A 70 570 37 HOH HOH . 
E 5 HOH A 71 571 116 HOH HOH . 
E 5 HOH A 72 572 51 HOH HOH . 
E 5 HOH A 73 573 67 HOH HOH . 
E 5 HOH A 74 574 114 HOH HOH . 
E 5 HOH A 75 575 63 HOH HOH . 
E 5 HOH A 76 576 87 HOH HOH . 
E 5 HOH A 77 577 107 HOH HOH . 
E 5 HOH A 78 578 101 HOH HOH . 
E 5 HOH A 79 579 59 HOH HOH . 
E 5 HOH A 80 580 100 HOH HOH . 
E 5 HOH A 81 581 24 HOH HOH . 
E 5 HOH A 82 582 77 HOH HOH . 
E 5 HOH A 83 583 29 HOH HOH . 
E 5 HOH A 84 584 97 HOH HOH . 
E 5 HOH A 85 585 73 HOH HOH . 
E 5 HOH A 86 586 113 HOH HOH . 
E 5 HOH A 87 587 44 HOH HOH . 
E 5 HOH A 88 588 13 HOH HOH . 
E 5 HOH A 89 589 38 HOH HOH . 
E 5 HOH A 90 590 18 HOH HOH . 
E 5 HOH A 91 591 86 HOH HOH . 
E 5 HOH A 92 592 115 HOH HOH . 
E 5 HOH A 93 593 11 HOH HOH . 
E 5 HOH A 94 594 34 HOH HOH . 
E 5 HOH A 95 595 96 HOH HOH . 
E 5 HOH A 96 596 98 HOH HOH . 
E 5 HOH A 97 597 122 HOH HOH . 
E 5 HOH A 98 598 58 HOH HOH . 
E 5 HOH A 99 599 123 HOH HOH . 
E 5 HOH A 100 600 81 HOH HOH . 
E 5 HOH A 101 601 71 HOH HOH . 
E 5 HOH A 102 602 128 HOH HOH . 
E 5 HOH A 103 603 85 HOH HOH . 
E 5 HOH A 104 604 109 HOH HOH . 
E 5 HOH A 105 605 93 HOH HOH . 
E 5 HOH A 106 606 94 HOH HOH . 
E 5 HOH A 107 607 106 HOH HOH . 
F 5 HOH C 1 201 48 HOH HOH . 
F 5 HOH C 2 202 120 HOH HOH . 
F 5 HOH C 3 203 1 HOH HOH . 
F 5 HOH C 4 204 105 HOH HOH . 
F 5 HOH C 5 205 108 HOH HOH . 
F 5 HOH C 6 206 70 HOH HOH . 
F 5 HOH C 7 207 64 HOH HOH . 
F 5 HOH C 8 208 121 HOH HOH . 
F 5 HOH C 9 209 30 HOH HOH . 
F 5 HOH C 10 210 124 HOH HOH . 
F 5 HOH C 11 211 102 HOH HOH . 
F 5 HOH C 12 212 119 HOH HOH . 
F 5 HOH C 13 213 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ATP . . . C 3 5.971 13.958 9.18 1 34.19 ? O5' ATP 401 A 1 
HETATM 2 C C5' ATP . . . C 3 4.965 12.966 9.037 1 32.73 ? C5' ATP 401 A 1 
HETATM 3 C C4' ATP . . . C 3 5.537 11.567 9.121 1 34.46 ? C4' ATP 401 A 1 
HETATM 4 O O4' ATP . . . C 3 6.389 11.3 7.97 1 32.8 ? O4' ATP 401 A 1 
HETATM 5 C C3' ATP . . . C 3 6.436 11.284 10.313 1 35.43 ? C3' ATP 401 A 1 
HETATM 6 O O3' ATP . . . C 3 5.709 11.026 11.509 1 37.64 ? O3' ATP 401 A 1 
HETATM 7 C C2' ATP . . . C 3 7.256 10.1 9.824 1 31.3 ? C2' ATP 401 A 1 
HETATM 8 O O2' ATP . . . C 3 6.476 8.913 9.868 1 27.1 ? O2' ATP 401 A 1 
HETATM 9 C C1' ATP . . . C 3 7.464 10.469 8.351 1 29.63 ? C1' ATP 401 A 1 
HETATM 10 N N9 ATP . . . C 3 8.72 11.218 8.126 1 24.31 ? N9 ATP 401 A 1 
HETATM 11 C C8 ATP . . . C 3 8.827 12.564 8.132 1 23.47 ? C8 ATP 401 A 1 
HETATM 12 N N7 ATP . . . C 3 10.092 12.965 7.886 1 22.04 ? N7 ATP 401 A 1 
HETATM 13 C C5 ATP . . . C 3 10.816 11.839 7.702 1 21.78 ? C5 ATP 401 A 1 
HETATM 14 C C6 ATP . . . C 3 12.229 11.539 7.399 1 21.46 ? C6 ATP 401 A 1 
HETATM 15 N N6 ATP . . . C 3 13.121 12.545 7.243 1 22.22 ? N6 ATP 401 A 1 
HETATM 16 N N1 ATP . . . C 3 12.592 10.239 7.29 1 21.4 ? N1 ATP 401 A 1 
HETATM 17 C C2 ATP . . . C 3 11.703 9.244 7.454 1 20.59 ? C2 ATP 401 A 1 
HETATM 18 N N3 ATP . . . C 3 10.399 9.441 7.725 1 20.79 ? N3 ATP 401 A 1 
HETATM 19 C C4 ATP . . . C 3 9.911 10.697 7.861 1 21.38 ? C4 ATP 401 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#