data_6EMM # _model_server_result.job_id '_FGLRoupQUbM7ET2dpXnkA' _model_server_result.datetime_utc '2025-06-19 16:01:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6emm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6EMM # _exptl.entry_id 6EMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EMM _cell.length_a 129.789 _cell.length_b 129.789 _cell.length_c 129.789 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 259.578 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 129.789 4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 259.578 129.789 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 257 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 257 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 255 _struct_conn.ptnr2_symmetry 4_576 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.923 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H6 O3' _chem_comp.formula_weight 138.121 _chem_comp.id SAL _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'SALICYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' O1' SAL doub 398 n n C1' O2' SAL sing 399 n n C1' C1 SAL sing 400 n n O2' HO2' SAL sing 401 n n C1 C2 SAL sing 402 n y C1 C6 SAL doub 403 n y C2 C3 SAL doub 404 n y C2 O2 SAL sing 405 n n C3 C4 SAL sing 406 n y C3 H3 SAL sing 407 n n C4 C5 SAL doub 408 n y C4 H4 SAL sing 409 n n C5 C6 SAL sing 410 n y C5 H5 SAL sing 411 n n C6 H6 SAL sing 412 n n O2 HO2 SAL sing 413 n n # _atom_sites.entry_id 6EMM _atom_sites.fract_transf_matrix[1][1] 0.007705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 PEG A 1 302 1 PEG PEG . D 4 SAL A 1 303 1 SAL SAL . E 5 PG4 A 1 304 1 PG4 PG4 . F 6 HOH A 1 401 512 HOH HOH . F 6 HOH A 2 402 526 HOH HOH . F 6 HOH A 3 403 514 HOH HOH . F 6 HOH A 4 404 524 HOH HOH . F 6 HOH A 5 405 530 HOH HOH . F 6 HOH A 6 406 513 HOH HOH . F 6 HOH A 7 407 504 HOH HOH . F 6 HOH A 8 408 425 HOH HOH . F 6 HOH A 9 409 510 HOH HOH . F 6 HOH A 10 410 408 HOH HOH . F 6 HOH A 11 411 422 HOH HOH . F 6 HOH A 12 412 515 HOH HOH . F 6 HOH A 13 413 537 HOH HOH . F 6 HOH A 14 414 442 HOH HOH . F 6 HOH A 15 415 445 HOH HOH . F 6 HOH A 16 416 532 HOH HOH . F 6 HOH A 17 417 16 HOH HOH . F 6 HOH A 18 418 457 HOH HOH . F 6 HOH A 19 419 462 HOH HOH . F 6 HOH A 20 420 506 HOH HOH . F 6 HOH A 21 421 423 HOH HOH . F 6 HOH A 22 422 466 HOH HOH . F 6 HOH A 23 423 511 HOH HOH . F 6 HOH A 24 424 469 HOH HOH . F 6 HOH A 25 425 5 HOH HOH . F 6 HOH A 26 426 508 HOH HOH . F 6 HOH A 27 427 19 HOH HOH . F 6 HOH A 28 428 533 HOH HOH . F 6 HOH A 29 429 507 HOH HOH . F 6 HOH A 30 430 536 HOH HOH . F 6 HOH A 31 431 531 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' SAL . . . D 4 12.099 122.526 53.144 1 67.21 ? C1' SAL 303 A 1 HETATM 2 O O1' SAL . . . D 4 10.915 122.752 52.622 1 70.31 -1 O1' SAL 303 A 1 HETATM 3 O O2' SAL . . . D 4 12.446 122.853 54.284 1 58.18 ? O2' SAL 303 A 1 HETATM 4 C C1 SAL . . . D 4 13.033 121.803 52.225 1 66.72 ? C1 SAL 303 A 1 HETATM 5 C C2 SAL . . . D 4 14.432 121.875 52.414 1 63.24 ? C2 SAL 303 A 1 HETATM 6 C C3 SAL . . . D 4 15.266 121.181 51.545 1 60.89 ? C3 SAL 303 A 1 HETATM 7 C C4 SAL . . . D 4 14.72 120.427 50.519 1 61.84 ? C4 SAL 303 A 1 HETATM 8 C C5 SAL . . . D 4 13.356 120.357 50.33 1 64.6 ? C5 SAL 303 A 1 HETATM 9 C C6 SAL . . . D 4 12.503 121.044 51.174 1 61.84 ? C6 SAL 303 A 1 HETATM 10 O O2 SAL . . . D 4 15.001 122.6 53.421 1 63.17 ? O2 SAL 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #