data_6EMX
#
_model_server_result.job_id            xzu2-BAVOhjSrSrEUVmR0A 
_model_server_result.datetime_utc      '2024-11-21 18:21:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6emx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":402}' 
#
_entry.id    6EMX 
#
_exptl.entry_id    6EMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.68 
_cell.angle_gamma         90 
_cell.entry_id            6EMX 
_cell.length_a            179.79 
_cell.length_b            133.322 
_cell.length_c            158.767 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 M N N 
? 3 P N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 71 A ILE 71 1_555 G NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 H NA NA . A NA 403 1_555 Y O HOH . D HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc3 B O ILE 71 B ILE 71 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc4 C O PRO 68 C PRO 68 1_555 M NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc5 C O ILE 71 C ILE 71 1_555 M NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc6 D O ILE 71 D ILE 71 1_555 P NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc7 E O PRO 68 E PRO 68 1_555 S NA NA . E NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? 
metalc ? metalc8 E O ILE 71 E ILE 71 1_555 S NA NA . E NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6EMX 
_atom_sites.fract_transf_matrix[1][1]    0.005562 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00115 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007501 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006432 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CL A 1 401 3 CL CL . 
G 3 NA A 1 402 2 NA NA . 
H 3 NA A 1 403 6 NA NA . 
I 4 MBR A 1 404 3 MBR MBR . 
J 2 CL B 1 401 4 CL CL . 
K 3 NA B 1 402 3 NA NA . 
L 4 MBR B 1 403 2 MBR MBR . 
M 3 NA C 1 401 4 NA NA . 
N 4 MBR C 1 402 6 MBR MBR . 
O 2 CL D 1 401 1 CL CL . 
P 3 NA D 1 402 5 NA NA . 
Q 4 MBR D 1 403 5 MBR MBR . 
R 2 CL E 1 401 2 CL CL . 
S 3 NA E 1 402 1 NA NA . 
T 4 MBR E 1 403 1 MBR MBR . 
U 4 MBR E 1 404 4 MBR MBR . 
V 5 HOH A 1 501 16 HOH HOH . 
V 5 HOH A 2 502 35 HOH HOH . 
V 5 HOH A 3 503 4 HOH HOH . 
V 5 HOH A 4 504 12 HOH HOH . 
V 5 HOH A 5 505 29 HOH HOH . 
W 5 HOH B 1 501 34 HOH HOH . 
W 5 HOH B 2 502 26 HOH HOH . 
W 5 HOH B 3 503 13 HOH HOH . 
W 5 HOH B 4 504 30 HOH HOH . 
W 5 HOH B 5 505 28 HOH HOH . 
X 5 HOH C 1 501 33 HOH HOH . 
X 5 HOH C 2 502 18 HOH HOH . 
X 5 HOH C 3 503 8 HOH HOH . 
X 5 HOH C 4 504 14 HOH HOH . 
Y 5 HOH D 1 501 6 HOH HOH . 
Y 5 HOH D 2 502 9 HOH HOH . 
Y 5 HOH D 3 503 27 HOH HOH . 
Y 5 HOH D 4 504 7 HOH HOH . 
Y 5 HOH D 5 505 32 HOH HOH . 
Z 5 HOH E 1 501 10 HOH HOH . 
Z 5 HOH E 2 502 31 HOH HOH . 
Z 5 HOH E 3 503 20 HOH HOH . 
Z 5 HOH E 4 504 3 HOH HOH . 
Z 5 HOH E 5 505 17 HOH HOH . 
Z 5 HOH E 6 506 11 HOH HOH . 
Z 5 HOH E 7 507 5 HOH HOH . 
Z 5 HOH E 8 508 15 HOH HOH . 
Z 5 HOH E 9 509 25 HOH HOH . 
Z 5 HOH E 10 510 2 HOH HOH . 
Z 5 HOH E 11 511 19 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               26.544 
_atom_site.Cartn_y               -10.772 
_atom_site.Cartn_z               -2.842 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        145.98 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#