data_6EMX # _model_server_result.job_id dFod_oHGRxXDTtqnB3pOPQ _model_server_result.datetime_utc '2024-11-13 03:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6emx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":404}' # _entry.id 6EMX # _exptl.entry_id 6EMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.731 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIBROMOMETHANE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.68 _cell.angle_gamma 90 _cell.entry_id 6EMX _cell.length_a 179.79 _cell.length_b 133.322 _cell.length_c 158.767 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 L N N ? 4 N N N ? 4 Q N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 G NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 H NA NA . A NA 403 1_555 Y O HOH . D HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc3 B O ILE 71 B ILE 71 1_555 K NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 C O PRO 68 C PRO 68 1_555 M NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc5 C O ILE 71 C ILE 71 1_555 M NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 D O ILE 71 D ILE 71 1_555 P NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc7 E O PRO 68 E PRO 68 1_555 S NA NA . E NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc8 E O ILE 71 E ILE 71 1_555 S NA NA . E NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C H Br3' _chem_comp.formula_weight 252.731 _chem_comp.id MBR _chem_comp.mon_nstd_flag . _chem_comp.name TRIBROMOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 BR2 MBR sing 218 n n C1 BR1 MBR sing 219 n n C1 BR3 MBR sing 220 n n C1 H1 MBR sing 221 n n # _atom_sites.entry_id 6EMX _atom_sites.fract_transf_matrix[1][1] 0.005562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CL A 1 401 3 CL CL . G 3 NA A 1 402 2 NA NA . H 3 NA A 1 403 6 NA NA . I 4 MBR A 1 404 3 MBR MBR . J 2 CL B 1 401 4 CL CL . K 3 NA B 1 402 3 NA NA . L 4 MBR B 1 403 2 MBR MBR . M 3 NA C 1 401 4 NA NA . N 4 MBR C 1 402 6 MBR MBR . O 2 CL D 1 401 1 CL CL . P 3 NA D 1 402 5 NA NA . Q 4 MBR D 1 403 5 MBR MBR . R 2 CL E 1 401 2 CL CL . S 3 NA E 1 402 1 NA NA . T 4 MBR E 1 403 1 MBR MBR . U 4 MBR E 1 404 4 MBR MBR . V 5 HOH A 1 501 16 HOH HOH . V 5 HOH A 2 502 35 HOH HOH . V 5 HOH A 3 503 4 HOH HOH . V 5 HOH A 4 504 12 HOH HOH . V 5 HOH A 5 505 29 HOH HOH . W 5 HOH B 1 501 34 HOH HOH . W 5 HOH B 2 502 26 HOH HOH . W 5 HOH B 3 503 13 HOH HOH . W 5 HOH B 4 504 30 HOH HOH . W 5 HOH B 5 505 28 HOH HOH . X 5 HOH C 1 501 33 HOH HOH . X 5 HOH C 2 502 18 HOH HOH . X 5 HOH C 3 503 8 HOH HOH . X 5 HOH C 4 504 14 HOH HOH . Y 5 HOH D 1 501 6 HOH HOH . Y 5 HOH D 2 502 9 HOH HOH . Y 5 HOH D 3 503 27 HOH HOH . Y 5 HOH D 4 504 7 HOH HOH . Y 5 HOH D 5 505 32 HOH HOH . Z 5 HOH E 1 501 10 HOH HOH . Z 5 HOH E 2 502 31 HOH HOH . Z 5 HOH E 3 503 20 HOH HOH . Z 5 HOH E 4 504 3 HOH HOH . Z 5 HOH E 5 505 17 HOH HOH . Z 5 HOH E 6 506 11 HOH HOH . Z 5 HOH E 7 507 5 HOH HOH . Z 5 HOH E 8 508 15 HOH HOH . Z 5 HOH E 9 509 25 HOH HOH . Z 5 HOH E 10 510 2 HOH HOH . Z 5 HOH E 11 511 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MBR . . . U 4 65.725 -12.098 35.055 1 290.39 ? C1 MBR 404 E 1 HETATM 2 BR BR2 MBR . . . U 4 64.402 -12.727 33.807 1 288.95 ? BR2 MBR 404 E 1 HETATM 3 BR BR1 MBR . . . U 4 66.308 -13.515 36.226 1 292.6 ? BR1 MBR 404 E 1 HETATM 4 BR BR3 MBR . . . U 4 67.216 -11.287 34.149 1 289.61 ? BR3 MBR 404 E 1 HETATM 5 H H1 MBR . . . U 4 65.231 -11.352 35.675 1 290.4 ? H1 MBR 404 E 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #