data_6ENZ # _model_server_result.job_id OF8jmMbJ9lHqME9GK4jHJg _model_server_result.datetime_utc '2025-02-28 19:08:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6enz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6ENZ # _exptl.entry_id 6ENZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.85 _cell.angle_gamma 90 _cell.entry_id 6ENZ _cell.length_a 137.43 _cell.length_b 80.64 _cell.length_c 128.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ENZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 342 A LYS 314 1_555 C C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 B NZ LYS 342 B LYS 314 1_555 D C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 258 n y N1 C6 PLP sing 259 n y C2 C2A PLP sing 260 n n C2 C3 PLP sing 261 n y C2A H2A1 PLP sing 262 n n C2A H2A2 PLP sing 263 n n C2A H2A3 PLP sing 264 n n C3 O3 PLP sing 265 n n C3 C4 PLP doub 266 n y O3 HO3 PLP sing 267 n n C4 C4A PLP sing 268 n n C4 C5 PLP sing 269 n y C4A O4A PLP doub 270 n n C4A H4A PLP sing 271 n n C5 C6 PLP doub 272 n y C5 C5A PLP sing 273 n n C6 H6 PLP sing 274 n n C5A O4P PLP sing 275 n n C5A H5A1 PLP sing 276 n n C5A H5A2 PLP sing 277 n n O4P P PLP sing 278 n n P O1P PLP doub 279 n n P O2P PLP sing 280 n n P O3P PLP sing 281 n n O2P HOP2 PLP sing 282 n n O3P HOP3 PLP sing 283 n n # _atom_sites.entry_id 6ENZ _atom_sites.fract_transf_matrix[1][1] 0.007276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003845 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 601 1314 PLP PLP . D 2 PLP B 1 601 1314 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 2 69.831 -31.538 152.226 1 80.63 ? N1 PLP 601 B 1 HETATM 2 C C2 PLP . . . D 2 69.144 -32.352 151.422 1 84.1 ? C2 PLP 601 B 1 HETATM 3 C C2A PLP . . . D 2 67.831 -33.028 151.924 1 79.7 ? C2A PLP 601 B 1 HETATM 4 C C3 PLP . . . D 2 69.619 -32.594 150.105 1 81.02 ? C3 PLP 601 B 1 HETATM 5 O O3 PLP . . . D 2 68.907 -33.438 149.242 1 79.8 ? O3 PLP 601 B 1 HETATM 6 C C4 PLP . . . D 2 70.772 -31.996 149.652 1 71.76 ? C4 PLP 601 B 1 HETATM 7 C C4A PLP . . . D 2 71.194 -32.349 148.137 1 71.43 ? C4A PLP 601 B 1 HETATM 8 C C5 PLP . . . D 2 71.485 -31.165 150.473 1 79.1 ? C5 PLP 601 B 1 HETATM 9 C C6 PLP . . . D 2 71.01 -30.927 151.773 1 84.02 ? C6 PLP 601 B 1 HETATM 10 C C5A PLP . . . D 2 72.802 -30.428 150.049 1 83.7 ? C5A PLP 601 B 1 HETATM 11 O O4P PLP . . . D 2 73.315 -30.845 148.803 1 84.84 ? O4P PLP 601 B 1 HETATM 12 P P PLP . . . D 2 74.476 -30.023 148.197 1 78.36 ? P PLP 601 B 1 HETATM 13 O O1P PLP . . . D 2 74.751 -30.49 146.762 1 85.26 ? O1P PLP 601 B 1 HETATM 14 O O2P PLP . . . D 2 75.689 -30.124 149.029 1 64.54 ? O2P PLP 601 B 1 HETATM 15 O O3P PLP . . . D 2 74.055 -28.596 148.15 1 78.29 ? O3P PLP 601 B 1 HETATM 16 H H2A1 PLP . . . D 2 67.073 -32.654 151.448 1 95.62 ? H2A1 PLP 601 B 1 HETATM 17 H H2A2 PLP . . . D 2 67.726 -32.871 152.875 1 95.62 ? H2A2 PLP 601 B 1 HETATM 18 H H2A3 PLP . . . D 2 67.878 -33.983 151.757 1 95.62 ? H2A3 PLP 601 B 1 HETATM 19 H HO3 PLP . . . D 2 69.428 -34.033 148.931 1 95.73 ? HO3 PLP 601 B 1 HETATM 20 H H4A PLP . . . D 2 71.112 -33.304 147.994 1 85.69 ? H4A PLP 601 B 1 HETATM 21 H H6 PLP . . . D 2 71.484 -30.362 152.339 1 100.8 ? H6 PLP 601 B 1 HETATM 22 H H5A1 PLP . . . D 2 73.475 -30.586 150.729 1 100.41 ? H5A1 PLP 601 B 1 HETATM 23 H H5A2 PLP . . . D 2 72.623 -29.476 150.005 1 100.41 ? H5A2 PLP 601 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #