data_6EO8 # _model_server_result.job_id QndnWFPXoSRzlXDS1_rCww _model_server_result.datetime_utc '2024-10-18 15:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":306}' # _entry.id 6EO8 # _exptl.entry_id 6EO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.7 _cell.angle_gamma 90 _cell.entry_id 6EO8 _cell.length_a 66.99 _cell.length_b 71.66 _cell.length_c 71.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 C C TYS 11 I TYS 63 1_555 C N LEU 12 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EO8 _atom_sites.fract_transf_matrix[1][1] 0.014928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMS H 1 301 302 DMS DMS . E 4 DMS H 1 302 303 DMS DMS . F 4 DMS H 1 303 304 DMS DMS . G 4 DMS H 1 304 301 DMS DMS . H 4 DMS H 1 305 305 DMS DMS . I 4 DMS H 1 306 306 DMS DMS . J 5 2FN H 1 307 307 2FN 2FN . K 6 HOH L 1 101 402 HOH HOH . K 6 HOH L 2 102 401 HOH HOH . K 6 HOH L 3 103 403 HOH HOH . K 6 HOH L 4 104 402 HOH HOH . K 6 HOH L 5 105 405 HOH HOH . L 6 HOH H 1 401 436 HOH HOH . L 6 HOH H 2 402 456 HOH HOH . L 6 HOH H 3 403 448 HOH HOH . L 6 HOH H 4 404 441 HOH HOH . L 6 HOH H 5 405 474 HOH HOH . L 6 HOH H 6 406 428 HOH HOH . L 6 HOH H 7 407 462 HOH HOH . L 6 HOH H 8 408 455 HOH HOH . L 6 HOH H 9 409 446 HOH HOH . L 6 HOH H 10 410 475 HOH HOH . L 6 HOH H 11 411 404 HOH HOH . L 6 HOH H 12 412 471 HOH HOH . L 6 HOH H 13 413 451 HOH HOH . L 6 HOH H 14 414 458 HOH HOH . L 6 HOH H 15 415 410 HOH HOH . L 6 HOH H 16 416 463 HOH HOH . L 6 HOH H 17 417 449 HOH HOH . L 6 HOH H 18 418 423 HOH HOH . L 6 HOH H 19 419 466 HOH HOH . L 6 HOH H 20 420 450 HOH HOH . L 6 HOH H 21 421 439 HOH HOH . L 6 HOH H 22 422 434 HOH HOH . L 6 HOH H 23 423 432 HOH HOH . L 6 HOH H 24 424 422 HOH HOH . L 6 HOH H 25 425 460 HOH HOH . L 6 HOH H 26 426 415 HOH HOH . L 6 HOH H 27 427 429 HOH HOH . L 6 HOH H 28 428 437 HOH HOH . L 6 HOH H 29 429 412 HOH HOH . L 6 HOH H 30 430 403 HOH HOH . L 6 HOH H 31 431 420 HOH HOH . L 6 HOH H 32 432 413 HOH HOH . L 6 HOH H 33 433 425 HOH HOH . L 6 HOH H 34 434 433 HOH HOH . L 6 HOH H 35 435 417 HOH HOH . L 6 HOH H 36 436 421 HOH HOH . L 6 HOH H 37 437 464 HOH HOH . L 6 HOH H 38 438 405 HOH HOH . L 6 HOH H 39 439 406 HOH HOH . L 6 HOH H 40 440 408 HOH HOH . L 6 HOH H 41 441 457 HOH HOH . L 6 HOH H 42 442 468 HOH HOH . L 6 HOH H 43 443 411 HOH HOH . L 6 HOH H 44 444 431 HOH HOH . L 6 HOH H 45 445 401 HOH HOH . L 6 HOH H 46 446 445 HOH HOH . L 6 HOH H 47 447 424 HOH HOH . L 6 HOH H 48 448 454 HOH HOH . L 6 HOH H 49 449 427 HOH HOH . L 6 HOH H 50 450 426 HOH HOH . L 6 HOH H 51 451 419 HOH HOH . L 6 HOH H 52 452 435 HOH HOH . L 6 HOH H 53 453 414 HOH HOH . L 6 HOH H 54 454 418 HOH HOH . L 6 HOH H 55 455 430 HOH HOH . L 6 HOH H 56 456 472 HOH HOH . L 6 HOH H 57 457 407 HOH HOH . L 6 HOH H 58 458 447 HOH HOH . L 6 HOH H 59 459 416 HOH HOH . L 6 HOH H 60 460 440 HOH HOH . L 6 HOH H 61 461 443 HOH HOH . L 6 HOH H 62 462 438 HOH HOH . L 6 HOH H 63 463 452 HOH HOH . L 6 HOH H 64 464 473 HOH HOH . L 6 HOH H 65 465 444 HOH HOH . L 6 HOH H 66 466 409 HOH HOH . L 6 HOH H 67 467 467 HOH HOH . L 6 HOH H 68 468 453 HOH HOH . L 6 HOH H 69 469 442 HOH HOH . L 6 HOH H 70 470 465 HOH HOH . L 6 HOH H 71 471 470 HOH HOH . L 6 HOH H 72 472 469 HOH HOH . L 6 HOH H 73 473 459 HOH HOH . L 6 HOH H 74 474 461 HOH HOH . L 6 HOH H 75 475 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 4 17.122 17.349 0.361 1 66.07 ? S DMS 306 H 1 HETATM 2 O O DMS . . . I 4 17.496 15.908 0.32 1 63.06 ? O DMS 306 H 1 HETATM 3 C C1 DMS . . . I 4 16.637 17.86 -1.204 1 67.26 ? C1 DMS 306 H 1 HETATM 4 C C2 DMS . . . I 4 15.691 17.339 1.276 1 58.97 ? C2 DMS 306 H 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #