data_6EO8 # _model_server_result.job_id HznmZ1yTnw9_7vJo4Y8ykg _model_server_result.datetime_utc '2024-10-18 15:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":307}' # _entry.id 6EO8 # _exptl.entry_id 6EO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 696.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{[5-(5-chlorothiophen-2-yl)-1,2-oxazol-3-yl]methoxy}-6-[3-(beta-D-glucopyranosyloxy)propoxy]phenyl)-1-(propan-2-yl)piperidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.7 _cell.angle_gamma 90 _cell.entry_id 6EO8 _cell.length_a 66.99 _cell.length_b 71.66 _cell.length_c 71.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 C C TYS 11 I TYS 63 1_555 C N LEU 12 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C32 H42 Cl N3 O10 S' _chem_comp.formula_weight 696.208 _chem_comp.id 2FN _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{[5-(5-chlorothiophen-2-yl)-1,2-oxazol-3-yl]methoxy}-6-[3-(beta-D-glucopyranosyloxy)propoxy]phenyl)-1-(propan-2-yl)piperidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EO8 _atom_sites.fract_transf_matrix[1][1] 0.014928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMS H 1 301 302 DMS DMS . E 4 DMS H 1 302 303 DMS DMS . F 4 DMS H 1 303 304 DMS DMS . G 4 DMS H 1 304 301 DMS DMS . H 4 DMS H 1 305 305 DMS DMS . I 4 DMS H 1 306 306 DMS DMS . J 5 2FN H 1 307 307 2FN 2FN . K 6 HOH L 1 101 402 HOH HOH . K 6 HOH L 2 102 401 HOH HOH . K 6 HOH L 3 103 403 HOH HOH . K 6 HOH L 4 104 402 HOH HOH . K 6 HOH L 5 105 405 HOH HOH . L 6 HOH H 1 401 436 HOH HOH . L 6 HOH H 2 402 456 HOH HOH . L 6 HOH H 3 403 448 HOH HOH . L 6 HOH H 4 404 441 HOH HOH . L 6 HOH H 5 405 474 HOH HOH . L 6 HOH H 6 406 428 HOH HOH . L 6 HOH H 7 407 462 HOH HOH . L 6 HOH H 8 408 455 HOH HOH . L 6 HOH H 9 409 446 HOH HOH . L 6 HOH H 10 410 475 HOH HOH . L 6 HOH H 11 411 404 HOH HOH . L 6 HOH H 12 412 471 HOH HOH . L 6 HOH H 13 413 451 HOH HOH . L 6 HOH H 14 414 458 HOH HOH . L 6 HOH H 15 415 410 HOH HOH . L 6 HOH H 16 416 463 HOH HOH . L 6 HOH H 17 417 449 HOH HOH . L 6 HOH H 18 418 423 HOH HOH . L 6 HOH H 19 419 466 HOH HOH . L 6 HOH H 20 420 450 HOH HOH . L 6 HOH H 21 421 439 HOH HOH . L 6 HOH H 22 422 434 HOH HOH . L 6 HOH H 23 423 432 HOH HOH . L 6 HOH H 24 424 422 HOH HOH . L 6 HOH H 25 425 460 HOH HOH . L 6 HOH H 26 426 415 HOH HOH . L 6 HOH H 27 427 429 HOH HOH . L 6 HOH H 28 428 437 HOH HOH . L 6 HOH H 29 429 412 HOH HOH . L 6 HOH H 30 430 403 HOH HOH . L 6 HOH H 31 431 420 HOH HOH . L 6 HOH H 32 432 413 HOH HOH . L 6 HOH H 33 433 425 HOH HOH . L 6 HOH H 34 434 433 HOH HOH . L 6 HOH H 35 435 417 HOH HOH . L 6 HOH H 36 436 421 HOH HOH . L 6 HOH H 37 437 464 HOH HOH . L 6 HOH H 38 438 405 HOH HOH . L 6 HOH H 39 439 406 HOH HOH . L 6 HOH H 40 440 408 HOH HOH . L 6 HOH H 41 441 457 HOH HOH . L 6 HOH H 42 442 468 HOH HOH . L 6 HOH H 43 443 411 HOH HOH . L 6 HOH H 44 444 431 HOH HOH . L 6 HOH H 45 445 401 HOH HOH . L 6 HOH H 46 446 445 HOH HOH . L 6 HOH H 47 447 424 HOH HOH . L 6 HOH H 48 448 454 HOH HOH . L 6 HOH H 49 449 427 HOH HOH . L 6 HOH H 50 450 426 HOH HOH . L 6 HOH H 51 451 419 HOH HOH . L 6 HOH H 52 452 435 HOH HOH . L 6 HOH H 53 453 414 HOH HOH . L 6 HOH H 54 454 418 HOH HOH . L 6 HOH H 55 455 430 HOH HOH . L 6 HOH H 56 456 472 HOH HOH . L 6 HOH H 57 457 407 HOH HOH . L 6 HOH H 58 458 447 HOH HOH . L 6 HOH H 59 459 416 HOH HOH . L 6 HOH H 60 460 440 HOH HOH . L 6 HOH H 61 461 443 HOH HOH . L 6 HOH H 62 462 438 HOH HOH . L 6 HOH H 63 463 452 HOH HOH . L 6 HOH H 64 464 473 HOH HOH . L 6 HOH H 65 465 444 HOH HOH . L 6 HOH H 66 466 409 HOH HOH . L 6 HOH H 67 467 467 HOH HOH . L 6 HOH H 68 468 453 HOH HOH . L 6 HOH H 69 469 442 HOH HOH . L 6 HOH H 70 470 465 HOH HOH . L 6 HOH H 71 471 470 HOH HOH . L 6 HOH H 72 472 469 HOH HOH . L 6 HOH H 73 473 459 HOH HOH . L 6 HOH H 74 474 461 HOH HOH . L 6 HOH H 75 475 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 2FN . . . J 5 15.566 27.839 11.677 1 24.33 ? C2 2FN 307 H 1 HETATM 2 C C4 2FN . . . J 5 16.483 26.886 11.486 1 21.67 ? C4 2FN 307 H 1 HETATM 3 C C5 2FN . . . J 5 16.348 25.847 12.333 1 23.89 ? C5 2FN 307 H 1 HETATM 4 C C6 2FN . . . J 5 15.325 25.994 13.181 1 26.08 ? C6 2FN 307 H 1 HETATM 5 O O8 2FN . . . J 5 14.356 25.438 15.275 1 31.02 ? O8 2FN 307 H 1 HETATM 6 C C7 2FN . . . J 5 14.974 25.115 14.116 1 28.78 ? C7 2FN 307 H 1 HETATM 7 O O31 2FN . . . J 5 10.55 19.197 13.364 1 35.96 ? O31 2FN 307 H 1 HETATM 8 C C21 2FN . . . J 5 10.972 20.236 12.859 1 35.94 ? C21 2FN 307 H 1 HETATM 9 C C22 2FN . . . J 5 10.013 21.272 12.27 1 37.98 ? C22 2FN 307 H 1 HETATM 10 C C30 2FN . . . J 5 9.879 21.047 10.773 1 39.92 ? C30 2FN 307 H 1 HETATM 11 C C29 2FN . . . J 5 8.866 22.026 10.202 1 39.12 ? C29 2FN 307 H 1 HETATM 12 N N25 2FN . . . J 5 7.553 21.86 10.843 1 42.54 ? N25 2FN 307 H 1 HETATM 13 C C26 2FN . . . J 5 6.598 22.813 10.26 1 44.47 ? C26 2FN 307 H 1 HETATM 14 C C28 2FN . . . J 5 6.864 23.01 8.766 1 43.42 ? C28 2FN 307 H 1 HETATM 15 C C27 2FN . . . J 5 5.158 22.34 10.464 1 45.45 ? C27 2FN 307 H 1 HETATM 16 C C24 2FN . . . J 5 7.676 22.11 12.286 1 40.77 ? C24 2FN 307 H 1 HETATM 17 C C23 2FN . . . J 5 8.65 21.134 12.928 1 38.07 ? C23 2FN 307 H 1 HETATM 18 N N20 2FN . . . J 5 12.271 20.555 12.776 1 40.47 ? N20 2FN 307 H 1 HETATM 19 C C19 2FN . . . J 5 13.143 19.684 13.276 1 42.4 ? C19 2FN 307 H 1 HETATM 20 C C14 2FN . . . J 5 13.8 19.982 14.458 1 42.14 ? C14 2FN 307 H 1 HETATM 21 O O13 2FN . . . J 5 13.509 21.173 15.048 1 36.24 ? O13 2FN 307 H 1 HETATM 22 C C12 2FN . . . J 5 14.717 21.787 15.505 1 31.63 ? C12 2FN 307 H 1 HETATM 23 C C11 2FN . . . J 5 14.692 23.279 15.165 1 31.26 ? C11 2FN 307 H 1 HETATM 24 N N9 2FN . . . J 5 14.178 24.221 15.953 1 31.59 ? N9 2FN 307 H 1 HETATM 25 C C10 2FN . . . J 5 15.181 23.804 14.044 1 28.94 ? C10 2FN 307 H 1 HETATM 26 S S3 2FN . . . J 5 14.572 27.412 12.897 1 22.92 ? S3 2FN 307 H 1 HETATM 27 CL CL1 2FN . . . J 5 15.45 29.306 10.768 1 20.6 ? CL1 2FN 307 H 1 HETATM 28 C C18 2FN . . . J 5 13.375 18.494 12.604 1 44.03 ? C18 2FN 307 H 1 HETATM 29 C C17 2FN . . . J 5 14.285 17.579 13.122 1 45.07 ? C17 2FN 307 H 1 HETATM 30 C C16 2FN . . . J 5 14.948 17.877 14.312 1 46.07 ? C16 2FN 307 H 1 HETATM 31 C C15 2FN . . . J 5 14.712 19.075 14.986 1 40.14 ? C15 2FN 307 H 1 HETATM 32 O O32 2FN . . . J 5 12.685 18.286 11.451 1 45.91 ? O32 2FN 307 H 1 HETATM 33 C C33 2FN . . . J 5 12.021 17.021 11.515 1 47.36 ? C33 2FN 307 H 1 HETATM 34 C C34 2FN . . . J 5 11.2 16.811 10.241 1 49.95 ? C34 2FN 307 H 1 HETATM 35 C C35 2FN . . . J 5 11.574 15.469 9.608 1 59.72 ? C35 2FN 307 H 1 HETATM 36 O O36 2FN . . . J 5 12.95 15.491 9.222 1 67.9 ? O36 2FN 307 H 1 HETATM 37 C C37 2FN . . . J 5 13.086 14.954 7.898 1 73.07 ? C37 2FN 307 H 1 HETATM 38 C C46 2FN . . . J 5 12.772 16.037 6.878 1 76.41 ? C46 2FN 307 H 1 HETATM 39 O O47 2FN . . . J 5 11.425 16.495 7.065 1 76.55 ? O47 2FN 307 H 1 HETATM 40 C C44 2FN . . . J 5 12.925 15.472 5.475 1 66.76 ? C44 2FN 307 H 1 HETATM 41 O O45 2FN . . . J 5 12.761 16.526 4.514 1 65.59 ? O45 2FN 307 H 1 HETATM 42 C C42 2FN . . . J 5 14.307 14.858 5.323 1 64.82 ? C42 2FN 307 H 1 HETATM 43 O O42 2FN . . . J 5 14.405 14.208 4.047 1 64.71 ? O42 2FN 307 H 1 HETATM 44 C C39 2FN . . . J 5 14.533 13.84 6.429 1 65.83 ? C39 2FN 307 H 1 HETATM 45 O O38 2FN . . . J 5 14.429 14.489 7.705 1 64.37 ? O38 2FN 307 H 1 HETATM 46 C C40 2FN . . . J 5 15.927 13.226 6.28 1 65.41 ? C40 2FN 307 H 1 HETATM 47 O O41 2FN . . . J 5 15.904 12.236 5.248 1 63.51 ? O41 2FN 307 H 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #