data_6EO9 # _model_server_result.job_id 2R6zZKlZ_Un76xhuJhFJkA _model_server_result.datetime_utc '2024-11-17 18:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6EO9 # _exptl.entry_id 6EO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.21 _cell.angle_gamma 90 _cell.entry_id 6EO9 _cell.length_a 67.46 _cell.length_b 71.64 _cell.length_c 71.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 H CYS 42 1_555 A SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 119 H CYS 122 1_555 B SG CYS 9 L CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 173 H CYS 168 1_555 A SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 201 H CYS 191 1_555 A SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EO9 _atom_sites.fract_transf_matrix[1][1] 0.014824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00267 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMS H 1 301 301 DMS DMS . E 4 DMS H 1 302 302 DMS DMS . F 4 DMS H 1 303 303 DMS DMS . G 4 DMS H 1 304 304 DMS DMS . H 4 DMS H 1 305 305 DMS DMS . I 4 DMS H 1 306 306 DMS DMS . J 5 2OJ H 1 307 307 2OJ 2OJ . K 6 HOH H 1 401 506 HOH HOH . K 6 HOH H 2 402 504 HOH HOH . K 6 HOH H 3 403 481 HOH HOH . K 6 HOH H 4 404 437 HOH HOH . K 6 HOH H 5 405 484 HOH HOH . K 6 HOH H 6 406 493 HOH HOH . K 6 HOH H 7 407 468 HOH HOH . K 6 HOH H 8 408 430 HOH HOH . K 6 HOH H 9 409 471 HOH HOH . K 6 HOH H 10 410 409 HOH HOH . K 6 HOH H 11 411 442 HOH HOH . K 6 HOH H 12 412 467 HOH HOH . K 6 HOH H 13 413 443 HOH HOH . K 6 HOH H 14 414 476 HOH HOH . K 6 HOH H 15 415 478 HOH HOH . K 6 HOH H 16 416 459 HOH HOH . K 6 HOH H 17 417 486 HOH HOH . K 6 HOH H 18 418 461 HOH HOH . K 6 HOH H 19 419 483 HOH HOH . K 6 HOH H 20 420 464 HOH HOH . K 6 HOH H 21 421 455 HOH HOH . K 6 HOH H 22 422 473 HOH HOH . K 6 HOH H 23 423 469 HOH HOH . K 6 HOH H 24 424 431 HOH HOH . K 6 HOH H 25 425 418 HOH HOH . K 6 HOH H 26 426 402 HOH HOH . K 6 HOH H 27 427 466 HOH HOH . K 6 HOH H 28 428 433 HOH HOH . K 6 HOH H 29 429 482 HOH HOH . K 6 HOH H 30 430 415 HOH HOH . K 6 HOH H 31 431 413 HOH HOH . K 6 HOH H 32 432 449 HOH HOH . K 6 HOH H 33 433 477 HOH HOH . K 6 HOH H 34 434 426 HOH HOH . K 6 HOH H 35 435 450 HOH HOH . K 6 HOH H 36 436 487 HOH HOH . K 6 HOH H 37 437 452 HOH HOH . K 6 HOH H 38 438 489 HOH HOH . K 6 HOH H 39 439 406 HOH HOH . K 6 HOH H 40 440 422 HOH HOH . K 6 HOH H 41 441 480 HOH HOH . K 6 HOH H 42 442 420 HOH HOH . K 6 HOH H 43 443 412 HOH HOH . K 6 HOH H 44 444 496 HOH HOH . K 6 HOH H 45 445 410 HOH HOH . K 6 HOH H 46 446 448 HOH HOH . K 6 HOH H 47 447 488 HOH HOH . K 6 HOH H 48 448 432 HOH HOH . K 6 HOH H 49 449 419 HOH HOH . K 6 HOH H 50 450 417 HOH HOH . K 6 HOH H 51 451 408 HOH HOH . K 6 HOH H 52 452 407 HOH HOH . K 6 HOH H 53 453 479 HOH HOH . K 6 HOH H 54 454 404 HOH HOH . K 6 HOH H 55 455 403 HOH HOH . K 6 HOH H 56 456 462 HOH HOH . K 6 HOH H 57 457 411 HOH HOH . K 6 HOH H 58 458 416 HOH HOH . K 6 HOH H 59 459 425 HOH HOH . K 6 HOH H 60 460 498 HOH HOH . K 6 HOH H 61 461 447 HOH HOH . K 6 HOH H 62 462 499 HOH HOH . K 6 HOH H 63 463 427 HOH HOH . K 6 HOH H 64 464 401 HOH HOH . K 6 HOH H 65 465 446 HOH HOH . K 6 HOH H 66 466 445 HOH HOH . K 6 HOH H 67 467 475 HOH HOH . K 6 HOH H 68 468 414 HOH HOH . K 6 HOH H 69 469 405 HOH HOH . K 6 HOH H 70 470 497 HOH HOH . K 6 HOH H 71 471 494 HOH HOH . K 6 HOH H 72 472 495 HOH HOH . K 6 HOH H 73 473 423 HOH HOH . K 6 HOH H 74 474 472 HOH HOH . K 6 HOH H 75 475 441 HOH HOH . K 6 HOH H 76 476 465 HOH HOH . K 6 HOH H 77 477 444 HOH HOH . K 6 HOH H 78 478 434 HOH HOH . K 6 HOH H 79 479 457 HOH HOH . K 6 HOH H 80 480 421 HOH HOH . K 6 HOH H 81 481 463 HOH HOH . K 6 HOH H 82 482 428 HOH HOH . K 6 HOH H 83 483 470 HOH HOH . K 6 HOH H 84 484 438 HOH HOH . K 6 HOH H 85 485 424 HOH HOH . K 6 HOH H 86 486 440 HOH HOH . K 6 HOH H 87 487 436 HOH HOH . K 6 HOH H 88 488 458 HOH HOH . K 6 HOH H 89 489 456 HOH HOH . K 6 HOH H 90 490 454 HOH HOH . K 6 HOH H 91 491 429 HOH HOH . K 6 HOH H 92 492 505 HOH HOH . K 6 HOH H 93 493 453 HOH HOH . K 6 HOH H 94 494 435 HOH HOH . K 6 HOH H 95 495 451 HOH HOH . K 6 HOH H 96 496 485 HOH HOH . K 6 HOH H 97 497 474 HOH HOH . K 6 HOH H 98 498 501 HOH HOH . K 6 HOH H 99 499 101 HOH HOH . K 6 HOH H 100 500 460 HOH HOH . K 6 HOH H 101 501 492 HOH HOH . K 6 HOH H 102 502 439 HOH HOH . K 6 HOH H 103 503 500 HOH HOH . K 6 HOH H 104 504 490 HOH HOH . K 6 HOH H 105 505 503 HOH HOH . K 6 HOH H 106 506 491 HOH HOH . K 6 HOH H 107 507 502 HOH HOH . K 6 HOH H 108 508 110 HOH HOH . L 6 HOH L 1 101 107 HOH HOH . L 6 HOH L 2 102 103 HOH HOH . L 6 HOH L 3 103 106 HOH HOH . L 6 HOH L 4 104 101 HOH HOH . L 6 HOH L 5 105 102 HOH HOH . L 6 HOH L 6 106 104 HOH HOH . L 6 HOH L 7 107 108 HOH HOH . L 6 HOH L 8 108 111 HOH HOH . L 6 HOH L 9 109 109 HOH HOH . L 6 HOH L 10 110 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 4 13.112 0.321 -1.518 1 39.96 ? S DMS 304 H 1 HETATM 2 O O DMS . . . G 4 12.312 -0.804 -0.947 1 34.91 ? O DMS 304 H 1 HETATM 3 C C1 DMS . . . G 4 11.987 1.589 -1.757 1 41.8 ? C1 DMS 304 H 1 HETATM 4 C C2 DMS . . . G 4 13.95 0.965 -0.297 1 37.76 ? C2 DMS 304 H 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 851 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #