data_6EO9 # _model_server_result.job_id Jqs4Q8rW2xpSSVIFyQ0N6g _model_server_result.datetime_utc '2024-11-17 18:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":307}' # _entry.id 6EO9 # _exptl.entry_id 6EO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 864.355 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{[5-(5-chlorothiophen-2-yl)-1,2-oxazol-3-yl]methoxy}-6-{3-[(2,3,4,6-tetra-O-acetyl-beta-D-glucopyranosyl)oxy]propoxy}phenyl)-1-(propan-2-yl)piperidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.21 _cell.angle_gamma 90 _cell.entry_id 6EO9 _cell.length_a 67.46 _cell.length_b 71.64 _cell.length_c 71.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 H CYS 42 1_555 A SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 119 H CYS 122 1_555 B SG CYS 9 L CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 173 H CYS 168 1_555 A SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 201 H CYS 191 1_555 A SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C40 H50 Cl N3 O14 S' _chem_comp.formula_weight 864.355 _chem_comp.id 2OJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{[5-(5-chlorothiophen-2-yl)-1,2-oxazol-3-yl]methoxy}-6-{3-[(2,3,4,6-tetra-O-acetyl-beta-D-glucopyranosyl)oxy]propoxy}phenyl)-1-(propan-2-yl)piperidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EO9 _atom_sites.fract_transf_matrix[1][1] 0.014824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00267 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMS H 1 301 301 DMS DMS . E 4 DMS H 1 302 302 DMS DMS . F 4 DMS H 1 303 303 DMS DMS . G 4 DMS H 1 304 304 DMS DMS . H 4 DMS H 1 305 305 DMS DMS . I 4 DMS H 1 306 306 DMS DMS . J 5 2OJ H 1 307 307 2OJ 2OJ . K 6 HOH H 1 401 506 HOH HOH . K 6 HOH H 2 402 504 HOH HOH . K 6 HOH H 3 403 481 HOH HOH . K 6 HOH H 4 404 437 HOH HOH . K 6 HOH H 5 405 484 HOH HOH . K 6 HOH H 6 406 493 HOH HOH . K 6 HOH H 7 407 468 HOH HOH . K 6 HOH H 8 408 430 HOH HOH . K 6 HOH H 9 409 471 HOH HOH . K 6 HOH H 10 410 409 HOH HOH . K 6 HOH H 11 411 442 HOH HOH . K 6 HOH H 12 412 467 HOH HOH . K 6 HOH H 13 413 443 HOH HOH . K 6 HOH H 14 414 476 HOH HOH . K 6 HOH H 15 415 478 HOH HOH . K 6 HOH H 16 416 459 HOH HOH . K 6 HOH H 17 417 486 HOH HOH . K 6 HOH H 18 418 461 HOH HOH . K 6 HOH H 19 419 483 HOH HOH . K 6 HOH H 20 420 464 HOH HOH . K 6 HOH H 21 421 455 HOH HOH . K 6 HOH H 22 422 473 HOH HOH . K 6 HOH H 23 423 469 HOH HOH . K 6 HOH H 24 424 431 HOH HOH . K 6 HOH H 25 425 418 HOH HOH . K 6 HOH H 26 426 402 HOH HOH . K 6 HOH H 27 427 466 HOH HOH . K 6 HOH H 28 428 433 HOH HOH . K 6 HOH H 29 429 482 HOH HOH . K 6 HOH H 30 430 415 HOH HOH . K 6 HOH H 31 431 413 HOH HOH . K 6 HOH H 32 432 449 HOH HOH . K 6 HOH H 33 433 477 HOH HOH . K 6 HOH H 34 434 426 HOH HOH . K 6 HOH H 35 435 450 HOH HOH . K 6 HOH H 36 436 487 HOH HOH . K 6 HOH H 37 437 452 HOH HOH . K 6 HOH H 38 438 489 HOH HOH . K 6 HOH H 39 439 406 HOH HOH . K 6 HOH H 40 440 422 HOH HOH . K 6 HOH H 41 441 480 HOH HOH . K 6 HOH H 42 442 420 HOH HOH . K 6 HOH H 43 443 412 HOH HOH . K 6 HOH H 44 444 496 HOH HOH . K 6 HOH H 45 445 410 HOH HOH . K 6 HOH H 46 446 448 HOH HOH . K 6 HOH H 47 447 488 HOH HOH . K 6 HOH H 48 448 432 HOH HOH . K 6 HOH H 49 449 419 HOH HOH . K 6 HOH H 50 450 417 HOH HOH . K 6 HOH H 51 451 408 HOH HOH . K 6 HOH H 52 452 407 HOH HOH . K 6 HOH H 53 453 479 HOH HOH . K 6 HOH H 54 454 404 HOH HOH . K 6 HOH H 55 455 403 HOH HOH . K 6 HOH H 56 456 462 HOH HOH . K 6 HOH H 57 457 411 HOH HOH . K 6 HOH H 58 458 416 HOH HOH . K 6 HOH H 59 459 425 HOH HOH . K 6 HOH H 60 460 498 HOH HOH . K 6 HOH H 61 461 447 HOH HOH . K 6 HOH H 62 462 499 HOH HOH . K 6 HOH H 63 463 427 HOH HOH . K 6 HOH H 64 464 401 HOH HOH . K 6 HOH H 65 465 446 HOH HOH . K 6 HOH H 66 466 445 HOH HOH . K 6 HOH H 67 467 475 HOH HOH . K 6 HOH H 68 468 414 HOH HOH . K 6 HOH H 69 469 405 HOH HOH . K 6 HOH H 70 470 497 HOH HOH . K 6 HOH H 71 471 494 HOH HOH . K 6 HOH H 72 472 495 HOH HOH . K 6 HOH H 73 473 423 HOH HOH . K 6 HOH H 74 474 472 HOH HOH . K 6 HOH H 75 475 441 HOH HOH . K 6 HOH H 76 476 465 HOH HOH . K 6 HOH H 77 477 444 HOH HOH . K 6 HOH H 78 478 434 HOH HOH . K 6 HOH H 79 479 457 HOH HOH . K 6 HOH H 80 480 421 HOH HOH . K 6 HOH H 81 481 463 HOH HOH . K 6 HOH H 82 482 428 HOH HOH . K 6 HOH H 83 483 470 HOH HOH . K 6 HOH H 84 484 438 HOH HOH . K 6 HOH H 85 485 424 HOH HOH . K 6 HOH H 86 486 440 HOH HOH . K 6 HOH H 87 487 436 HOH HOH . K 6 HOH H 88 488 458 HOH HOH . K 6 HOH H 89 489 456 HOH HOH . K 6 HOH H 90 490 454 HOH HOH . K 6 HOH H 91 491 429 HOH HOH . K 6 HOH H 92 492 505 HOH HOH . K 6 HOH H 93 493 453 HOH HOH . K 6 HOH H 94 494 435 HOH HOH . K 6 HOH H 95 495 451 HOH HOH . K 6 HOH H 96 496 485 HOH HOH . K 6 HOH H 97 497 474 HOH HOH . K 6 HOH H 98 498 501 HOH HOH . K 6 HOH H 99 499 101 HOH HOH . K 6 HOH H 100 500 460 HOH HOH . K 6 HOH H 101 501 492 HOH HOH . K 6 HOH H 102 502 439 HOH HOH . K 6 HOH H 103 503 500 HOH HOH . K 6 HOH H 104 504 490 HOH HOH . K 6 HOH H 105 505 503 HOH HOH . K 6 HOH H 106 506 491 HOH HOH . K 6 HOH H 107 507 502 HOH HOH . K 6 HOH H 108 508 110 HOH HOH . L 6 HOH L 1 101 107 HOH HOH . L 6 HOH L 2 102 103 HOH HOH . L 6 HOH L 3 103 106 HOH HOH . L 6 HOH L 4 104 101 HOH HOH . L 6 HOH L 5 105 102 HOH HOH . L 6 HOH L 6 106 104 HOH HOH . L 6 HOH L 7 107 108 HOH HOH . L 6 HOH L 8 108 111 HOH HOH . L 6 HOH L 9 109 109 HOH HOH . L 6 HOH L 10 110 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 2OJ . . . J 5 15.255 -6.596 10.642 1 30.25 ? CL1 2OJ 307 H 1 HETATM 2 C C2 2OJ . . . J 5 15.489 -8.098 11.609 1 35.73 ? C2 2OJ 307 H 1 HETATM 3 S S3 2OJ . . . J 5 14.598 -8.475 12.928 1 38.23 ? S3 2OJ 307 H 1 HETATM 4 C C4 2OJ . . . J 5 16.369 -9.096 11.384 1 31.52 ? C4 2OJ 307 H 1 HETATM 5 C C5 2OJ . . . J 5 16.276 -10.092 12.291 1 33.51 ? C5 2OJ 307 H 1 HETATM 6 C C6 2OJ . . . J 5 15.351 -9.853 13.226 1 36.06 ? C6 2OJ 307 H 1 HETATM 7 C C7 2OJ . . . J 5 15.016 -10.655 14.187 1 39.8 ? C7 2OJ 307 H 1 HETATM 8 O O8 2OJ . . . J 5 14.387 -10.346 15.133 1 43.03 ? O8 2OJ 307 H 1 HETATM 9 N N9 2OJ . . . J 5 14.159 -11.37 15.876 1 47.97 ? N9 2OJ 307 H 1 HETATM 10 C C10 2OJ . . . J 5 15.241 -11.963 14.172 1 50.47 ? C10 2OJ 307 H 1 HETATM 11 C C11 2OJ . . . J 5 14.703 -12.422 15.278 1 49.01 ? C11 2OJ 307 H 1 HETATM 12 C C12 2OJ . . . J 5 14.697 -13.912 15.729 1 55.21 ? C12 2OJ 307 H 1 HETATM 13 O O13 2OJ . . . J 5 13.589 -14.638 15.124 1 56.74 ? O13 2OJ 307 H 1 HETATM 14 C C14 2OJ . . . J 5 13.756 -15.893 14.555 1 63.13 ? C14 2OJ 307 H 1 HETATM 15 C C15 2OJ . . . J 5 14.683 -16.831 14.971 1 61.95 ? C15 2OJ 307 H 1 HETATM 16 C C16 2OJ . . . J 5 14.78 -18.068 14.33 1 66.02 ? C16 2OJ 307 H 1 HETATM 17 C C17 2OJ . . . J 5 13.935 -18.414 13.275 1 68.62 ? C17 2OJ 307 H 1 HETATM 18 C C19 2OJ . . . J 5 12.937 -16.257 13.482 1 61.56 ? C19 2OJ 307 H 1 HETATM 19 N N20 2OJ . . . J 5 12.05 -15.419 13.028 1 54.62 ? N20 2OJ 307 H 1 HETATM 20 C C21 2OJ . . . J 5 10.786 -15.766 13.098 1 56.88 ? C21 2OJ 307 H 1 HETATM 21 C C22 2OJ . . . J 5 9.852 -14.765 12.405 1 54.58 ? C22 2OJ 307 H 1 HETATM 22 C C23 2OJ . . . J 5 8.556 -14.784 13.045 1 55.97 ? C23 2OJ 307 H 1 HETATM 23 C C24 2OJ . . . J 5 7.77 -13.719 12.421 1 57.32 ? C24 2OJ 307 H 1 HETATM 24 N N25 2OJ . . . J 5 7.474 -13.995 11.013 1 55.87 ? N25 2OJ 307 H 1 HETATM 25 C C26 2OJ . . . J 5 6.815 -12.791 10.507 1 55.96 ? C26 2OJ 307 H 1 HETATM 26 C C27 2OJ . . . J 5 5.324 -12.956 10.56 1 57.89 ? C27 2OJ 307 H 1 HETATM 27 C C28 2OJ . . . J 5 7.149 -12.451 9.091 1 55.58 ? C28 2OJ 307 H 1 HETATM 28 C C29 2OJ . . . J 5 8.695 -14.238 10.26 1 52.62 ? C29 2OJ 307 H 1 HETATM 29 C C30 2OJ . . . J 5 9.648 -15.174 10.984 1 53.48 ? C30 2OJ 307 H 1 HETATM 30 O O31 2OJ . . . J 5 10.369 -16.763 13.68 1 59.06 ? O31 2OJ 307 H 1 HETATM 31 C C18 2OJ . . . J 5 13.013 -17.485 12.818 1 66.7 ? C18 2OJ 307 H 1 HETATM 32 O O32 2OJ . . . J 5 12.108 -17.733 11.798 1 68.12 ? O32 2OJ 307 H 1 HETATM 33 C C33 2OJ . . . J 5 12.441 -18.255 10.532 1 65.75 ? C33 2OJ 307 H 1 HETATM 34 C C34 2OJ . . . J 5 11.343 -19.208 10.012 1 68.24 ? C34 2OJ 307 H 1 HETATM 35 C C35 2OJ . . . J 5 9.932 -18.831 10.5 1 70.91 ? C35 2OJ 307 H 1 HETATM 36 O O36 2OJ . . . J 5 9.005 -19.907 10.299 1 76.87 ? O36 2OJ 307 H 1 HETATM 37 C C37 2OJ . . . J 5 7.952 -19.785 9.268 1 94.11 ? C37 2OJ 307 H 1 HETATM 38 O O38 2OJ . . . J 5 7.016 -18.616 9.216 1 93.6 ? O38 2OJ 307 H 1 HETATM 39 C C46 2OJ . . . J 5 7.152 -21.076 9.328 1 98.9 ? C46 2OJ 307 H 1 HETATM 40 O O47 2OJ . . . J 5 8.046 -22.244 9.325 1 91.93 ? O47 2OJ 307 H 1 HETATM 41 C C85 2OJ . . . J 5 8.071 -22.785 10.569 1 92.19 ? C85 2OJ 307 H 1 HETATM 42 O O86 2OJ . . . J 5 8.906 -22.505 11.424 1 86.86 ? O86 2OJ 307 H 1 HETATM 43 C C87 2OJ . . . J 5 6.96 -23.816 10.867 1 82.64 ? C87 2OJ 307 H 1 HETATM 44 C C44 2OJ . . . J 5 6.238 -21.165 8.124 1 104.34 ? C44 2OJ 307 H 1 HETATM 45 O O45 2OJ . . . J 5 5.578 -22.445 8.21 1 99.81 ? O45 2OJ 307 H 1 HETATM 46 C C88 2OJ . . . J 5 5.42 -22.796 6.924 1 93.83 ? C88 2OJ 307 H 1 HETATM 47 C C89 2OJ . . . J 5 6.606 -23.543 6.323 1 88.18 ? C89 2OJ 307 H 1 HETATM 48 O O90 2OJ . . . J 5 4.443 -22.485 6.265 1 93.3 ? O90 2OJ 307 H 1 HETATM 49 C C42 2OJ . . . J 5 5.212 -20.053 8.167 1 107.64 ? C42 2OJ 307 H 1 HETATM 50 O O42 2OJ . . . J 5 4.231 -20.066 7.029 1 98.92 ? O42 2OJ 307 H 1 HETATM 51 C C91 2OJ . . . J 5 2.972 -19.677 7.405 1 89.74 ? C91 2OJ 307 H 1 HETATM 52 C C92 2OJ . . . J 5 2.515 -20.219 8.753 1 83.23 ? C92 2OJ 307 H 1 HETATM 53 O O93 2OJ . . . J 5 2.231 -18.952 6.74 1 76.34 ? O93 2OJ 307 H 1 HETATM 54 C C39 2OJ . . . J 5 5.926 -18.727 8.182 1 107.54 ? C39 2OJ 307 H 1 HETATM 55 C C40 2OJ . . . J 5 4.795 -17.678 8.31 1 111.73 ? C40 2OJ 307 H 1 HETATM 56 O O41 2OJ . . . J 5 4.918 -16.733 7.271 1 115.65 ? O41 2OJ 307 H 1 HETATM 57 C C94 2OJ . . . J 5 3.663 -16.225 6.942 1 129.98 ? C94 2OJ 307 H 1 HETATM 58 O O96 2OJ . . . J 5 2.622 -16.369 7.594 1 128.15 ? O96 2OJ 307 H 1 HETATM 59 C C95 2OJ . . . J 5 3.635 -15.409 5.655 1 129.57 ? C95 2OJ 307 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 59 #