data_6EOE # _model_server_result.job_id G2oRhkyFJlYyAopagx2EzA _model_server_result.datetime_utc '2025-08-29 18:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eoe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6EOE # _exptl.entry_id 6EOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EOE _cell.length_a 69.089 _cell.length_b 75.31 _cell.length_c 98.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6EOE _atom_sites.fract_transf_matrix[1][1] 0.014474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 601 1 FLC FLC . C 3 SO4 A 1 602 1 SO4 SO4 . D 4 ADP A 1 603 1 ADP ADP . E 5 HOH A 1 701 190 HOH HOH . E 5 HOH A 2 702 207 HOH HOH . E 5 HOH A 3 703 194 HOH HOH . E 5 HOH A 4 704 133 HOH HOH . E 5 HOH A 5 705 165 HOH HOH . E 5 HOH A 6 706 120 HOH HOH . E 5 HOH A 7 707 204 HOH HOH . E 5 HOH A 8 708 29 HOH HOH . E 5 HOH A 9 709 28 HOH HOH . E 5 HOH A 10 710 230 HOH HOH . E 5 HOH A 11 711 138 HOH HOH . E 5 HOH A 12 712 50 HOH HOH . E 5 HOH A 13 713 237 HOH HOH . E 5 HOH A 14 714 32 HOH HOH . E 5 HOH A 15 715 51 HOH HOH . E 5 HOH A 16 716 30 HOH HOH . E 5 HOH A 17 717 115 HOH HOH . E 5 HOH A 18 718 114 HOH HOH . E 5 HOH A 19 719 150 HOH HOH . E 5 HOH A 20 720 161 HOH HOH . E 5 HOH A 21 721 156 HOH HOH . E 5 HOH A 22 722 209 HOH HOH . E 5 HOH A 23 723 145 HOH HOH . E 5 HOH A 24 724 261 HOH HOH . E 5 HOH A 25 725 202 HOH HOH . E 5 HOH A 26 726 101 HOH HOH . E 5 HOH A 27 727 108 HOH HOH . E 5 HOH A 28 728 149 HOH HOH . E 5 HOH A 29 729 154 HOH HOH . E 5 HOH A 30 730 14 HOH HOH . E 5 HOH A 31 731 153 HOH HOH . E 5 HOH A 32 732 47 HOH HOH . E 5 HOH A 33 733 179 HOH HOH . E 5 HOH A 34 734 98 HOH HOH . E 5 HOH A 35 735 112 HOH HOH . E 5 HOH A 36 736 200 HOH HOH . E 5 HOH A 37 737 162 HOH HOH . E 5 HOH A 38 738 214 HOH HOH . E 5 HOH A 39 739 203 HOH HOH . E 5 HOH A 40 740 192 HOH HOH . E 5 HOH A 41 741 193 HOH HOH . E 5 HOH A 42 742 137 HOH HOH . E 5 HOH A 43 743 247 HOH HOH . E 5 HOH A 44 744 100 HOH HOH . E 5 HOH A 45 745 10 HOH HOH . E 5 HOH A 46 746 96 HOH HOH . E 5 HOH A 47 747 180 HOH HOH . E 5 HOH A 48 748 256 HOH HOH . E 5 HOH A 49 749 258 HOH HOH . E 5 HOH A 50 750 178 HOH HOH . E 5 HOH A 51 751 140 HOH HOH . E 5 HOH A 52 752 166 HOH HOH . E 5 HOH A 53 753 265 HOH HOH . E 5 HOH A 54 754 240 HOH HOH . E 5 HOH A 55 755 151 HOH HOH . E 5 HOH A 56 756 141 HOH HOH . E 5 HOH A 57 757 33 HOH HOH . E 5 HOH A 58 758 77 HOH HOH . E 5 HOH A 59 759 197 HOH HOH . E 5 HOH A 60 760 143 HOH HOH . E 5 HOH A 61 761 58 HOH HOH . E 5 HOH A 62 762 61 HOH HOH . E 5 HOH A 63 763 210 HOH HOH . E 5 HOH A 64 764 126 HOH HOH . E 5 HOH A 65 765 224 HOH HOH . E 5 HOH A 66 766 183 HOH HOH . E 5 HOH A 67 767 228 HOH HOH . E 5 HOH A 68 768 148 HOH HOH . E 5 HOH A 69 769 122 HOH HOH . E 5 HOH A 70 770 34 HOH HOH . E 5 HOH A 71 771 158 HOH HOH . E 5 HOH A 72 772 87 HOH HOH . E 5 HOH A 73 773 63 HOH HOH . E 5 HOH A 74 774 71 HOH HOH . E 5 HOH A 75 775 41 HOH HOH . E 5 HOH A 76 776 7 HOH HOH . E 5 HOH A 77 777 206 HOH HOH . E 5 HOH A 78 778 121 HOH HOH . E 5 HOH A 79 779 97 HOH HOH . E 5 HOH A 80 780 44 HOH HOH . E 5 HOH A 81 781 45 HOH HOH . E 5 HOH A 82 782 90 HOH HOH . E 5 HOH A 83 783 66 HOH HOH . E 5 HOH A 84 784 249 HOH HOH . E 5 HOH A 85 785 102 HOH HOH . E 5 HOH A 86 786 72 HOH HOH . E 5 HOH A 87 787 211 HOH HOH . E 5 HOH A 88 788 57 HOH HOH . E 5 HOH A 89 789 15 HOH HOH . E 5 HOH A 90 790 266 HOH HOH . E 5 HOH A 91 791 267 HOH HOH . E 5 HOH A 92 792 216 HOH HOH . E 5 HOH A 93 793 95 HOH HOH . E 5 HOH A 94 794 231 HOH HOH . E 5 HOH A 95 795 159 HOH HOH . E 5 HOH A 96 796 80 HOH HOH . E 5 HOH A 97 797 17 HOH HOH . E 5 HOH A 98 798 239 HOH HOH . E 5 HOH A 99 799 227 HOH HOH . E 5 HOH A 100 800 68 HOH HOH . E 5 HOH A 101 801 99 HOH HOH . E 5 HOH A 102 802 172 HOH HOH . E 5 HOH A 103 803 20 HOH HOH . E 5 HOH A 104 804 59 HOH HOH . E 5 HOH A 105 805 5 HOH HOH . E 5 HOH A 106 806 157 HOH HOH . E 5 HOH A 107 807 56 HOH HOH . E 5 HOH A 108 808 106 HOH HOH . E 5 HOH A 109 809 117 HOH HOH . E 5 HOH A 110 810 105 HOH HOH . E 5 HOH A 111 811 76 HOH HOH . E 5 HOH A 112 812 119 HOH HOH . E 5 HOH A 113 813 191 HOH HOH . E 5 HOH A 114 814 82 HOH HOH . E 5 HOH A 115 815 26 HOH HOH . E 5 HOH A 116 816 263 HOH HOH . E 5 HOH A 117 817 18 HOH HOH . E 5 HOH A 118 818 62 HOH HOH . E 5 HOH A 119 819 25 HOH HOH . E 5 HOH A 120 820 52 HOH HOH . E 5 HOH A 121 821 174 HOH HOH . E 5 HOH A 122 822 169 HOH HOH . E 5 HOH A 123 823 8 HOH HOH . E 5 HOH A 124 824 78 HOH HOH . E 5 HOH A 125 825 42 HOH HOH . E 5 HOH A 126 826 262 HOH HOH . E 5 HOH A 127 827 36 HOH HOH . E 5 HOH A 128 828 116 HOH HOH . E 5 HOH A 129 829 86 HOH HOH . E 5 HOH A 130 830 9 HOH HOH . E 5 HOH A 131 831 181 HOH HOH . E 5 HOH A 132 832 251 HOH HOH . E 5 HOH A 133 833 244 HOH HOH . E 5 HOH A 134 834 74 HOH HOH . E 5 HOH A 135 835 213 HOH HOH . E 5 HOH A 136 836 142 HOH HOH . E 5 HOH A 137 837 85 HOH HOH . E 5 HOH A 138 838 79 HOH HOH . E 5 HOH A 139 839 173 HOH HOH . E 5 HOH A 140 840 94 HOH HOH . E 5 HOH A 141 841 139 HOH HOH . E 5 HOH A 142 842 229 HOH HOH . E 5 HOH A 143 843 91 HOH HOH . E 5 HOH A 144 844 89 HOH HOH . E 5 HOH A 145 845 110 HOH HOH . E 5 HOH A 146 846 70 HOH HOH . E 5 HOH A 147 847 134 HOH HOH . E 5 HOH A 148 848 241 HOH HOH . E 5 HOH A 149 849 205 HOH HOH . E 5 HOH A 150 850 48 HOH HOH . E 5 HOH A 151 851 175 HOH HOH . E 5 HOH A 152 852 81 HOH HOH . E 5 HOH A 153 853 152 HOH HOH . E 5 HOH A 154 854 245 HOH HOH . E 5 HOH A 155 855 31 HOH HOH . E 5 HOH A 156 856 24 HOH HOH . E 5 HOH A 157 857 199 HOH HOH . E 5 HOH A 158 858 113 HOH HOH . E 5 HOH A 159 859 83 HOH HOH . E 5 HOH A 160 860 246 HOH HOH . E 5 HOH A 161 861 167 HOH HOH . E 5 HOH A 162 862 39 HOH HOH . E 5 HOH A 163 863 226 HOH HOH . E 5 HOH A 164 864 160 HOH HOH . E 5 HOH A 165 865 35 HOH HOH . E 5 HOH A 166 866 64 HOH HOH . E 5 HOH A 167 867 196 HOH HOH . E 5 HOH A 168 868 88 HOH HOH . E 5 HOH A 169 869 182 HOH HOH . E 5 HOH A 170 870 128 HOH HOH . E 5 HOH A 171 871 16 HOH HOH . E 5 HOH A 172 872 170 HOH HOH . E 5 HOH A 173 873 123 HOH HOH . E 5 HOH A 174 874 75 HOH HOH . E 5 HOH A 175 875 198 HOH HOH . E 5 HOH A 176 876 13 HOH HOH . E 5 HOH A 177 877 250 HOH HOH . E 5 HOH A 178 878 19 HOH HOH . E 5 HOH A 179 879 171 HOH HOH . E 5 HOH A 180 880 135 HOH HOH . E 5 HOH A 181 881 217 HOH HOH . E 5 HOH A 182 882 168 HOH HOH . E 5 HOH A 183 883 60 HOH HOH . E 5 HOH A 184 884 132 HOH HOH . E 5 HOH A 185 885 146 HOH HOH . E 5 HOH A 186 886 23 HOH HOH . E 5 HOH A 187 887 37 HOH HOH . E 5 HOH A 188 888 67 HOH HOH . E 5 HOH A 189 889 233 HOH HOH . E 5 HOH A 190 890 215 HOH HOH . E 5 HOH A 191 891 130 HOH HOH . E 5 HOH A 192 892 136 HOH HOH . E 5 HOH A 193 893 232 HOH HOH . E 5 HOH A 194 894 221 HOH HOH . E 5 HOH A 195 895 53 HOH HOH . E 5 HOH A 196 896 38 HOH HOH . E 5 HOH A 197 897 43 HOH HOH . E 5 HOH A 198 898 104 HOH HOH . E 5 HOH A 199 899 127 HOH HOH . E 5 HOH A 200 900 147 HOH HOH . E 5 HOH A 201 901 103 HOH HOH . E 5 HOH A 202 902 223 HOH HOH . E 5 HOH A 203 903 22 HOH HOH . E 5 HOH A 204 904 107 HOH HOH . E 5 HOH A 205 905 144 HOH HOH . E 5 HOH A 206 906 254 HOH HOH . E 5 HOH A 207 907 11 HOH HOH . E 5 HOH A 208 908 242 HOH HOH . E 5 HOH A 209 909 268 HOH HOH . E 5 HOH A 210 910 129 HOH HOH . E 5 HOH A 211 911 124 HOH HOH . E 5 HOH A 212 912 195 HOH HOH . E 5 HOH A 213 913 92 HOH HOH . E 5 HOH A 214 914 46 HOH HOH . E 5 HOH A 215 915 118 HOH HOH . E 5 HOH A 216 916 93 HOH HOH . E 5 HOH A 217 917 269 HOH HOH . E 5 HOH A 218 918 238 HOH HOH . E 5 HOH A 219 919 252 HOH HOH . E 5 HOH A 220 920 259 HOH HOH . E 5 HOH A 221 921 176 HOH HOH . E 5 HOH A 222 922 84 HOH HOH . E 5 HOH A 223 923 248 HOH HOH . E 5 HOH A 224 924 208 HOH HOH . E 5 HOH A 225 925 55 HOH HOH . E 5 HOH A 226 926 164 HOH HOH . E 5 HOH A 227 927 255 HOH HOH . E 5 HOH A 228 928 201 HOH HOH . E 5 HOH A 229 929 253 HOH HOH . E 5 HOH A 230 930 260 HOH HOH . E 5 HOH A 231 931 125 HOH HOH . E 5 HOH A 232 932 236 HOH HOH . E 5 HOH A 233 933 222 HOH HOH . E 5 HOH A 234 934 177 HOH HOH . E 5 HOH A 235 935 131 HOH HOH . E 5 HOH A 236 936 264 HOH HOH . E 5 HOH A 237 937 212 HOH HOH . E 5 HOH A 238 938 243 HOH HOH . E 5 HOH A 239 939 163 HOH HOH . E 5 HOH A 240 940 220 HOH HOH . E 5 HOH A 241 941 219 HOH HOH . E 5 HOH A 242 942 189 HOH HOH . E 5 HOH A 243 943 234 HOH HOH . E 5 HOH A 244 944 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 4 -43.456 -0.428 -9.992 0.5 27.37 ? PB ADP 603 A 1 HETATM 2 O O1B ADP . . . D 4 -43.019 -0.875 -11.363 0.5 27.95 ? O1B ADP 603 A 1 HETATM 3 O O2B ADP . . . D 4 -42.762 -1.041 -8.81 0.5 28.61 ? O2B ADP 603 A 1 HETATM 4 O O3B ADP . . . D 4 -43.601 1.045 -9.817 0.5 28.3 ? O3B ADP 603 A 1 HETATM 5 P PA ADP . . . D 4 -45.993 -0.814 -11.135 0.5 23.44 ? PA ADP 603 A 1 HETATM 6 O O1A ADP . . . D 4 -45.513 -1.364 -12.461 0.5 22.67 ? O1A ADP 603 A 1 HETATM 7 O O2A ADP . . . D 4 -47.32 -1.239 -10.557 0.5 22.73 ? O2A ADP 603 A 1 HETATM 8 O O3A ADP . . . D 4 -44.934 -1.044 -9.943 0.5 25.36 ? O3A ADP 603 A 1 HETATM 9 O O5' ADP . . . D 4 -45.975 0.777 -11.296 1 24.94 ? O5' ADP 603 A 1 HETATM 10 C C5' ADP . . . D 4 -46.518 1.586 -10.259 1 24.32 ? C5' ADP 603 A 1 HETATM 11 C C4' ADP . . . D 4 -46.257 3.031 -10.626 1 24.08 ? C4' ADP 603 A 1 HETATM 12 O O4' ADP . . . D 4 -47.284 3.329 -11.57 1 24.03 ? O4' ADP 603 A 1 HETATM 13 C C3' ADP . . . D 4 -46.398 4.011 -9.467 1 24.19 ? C3' ADP 603 A 1 HETATM 14 O O3' ADP . . . D 4 -45.507 5.12 -9.625 1 24.28 ? O3' ADP 603 A 1 HETATM 15 C C2' ADP . . . D 4 -47.836 4.458 -9.589 1 24.29 ? C2' ADP 603 A 1 HETATM 16 O O2' ADP . . . D 4 -48.081 5.773 -9.1 1 24.82 ? O2' ADP 603 A 1 HETATM 17 C C1' ADP . . . D 4 -48.067 4.409 -11.087 1 24.05 ? C1' ADP 603 A 1 HETATM 18 N N9 ADP . . . D 4 -49.501 4.232 -11.402 1 23.8 ? N9 ADP 603 A 1 HETATM 19 C C8 ADP . . . D 4 -50.254 3.134 -11.182 1 24.02 ? C8 ADP 603 A 1 HETATM 20 N N7 ADP . . . D 4 -51.528 3.352 -11.596 1 24.17 ? N7 ADP 603 A 1 HETATM 21 C C5 ADP . . . D 4 -51.586 4.607 -12.09 1 24.31 ? C5 ADP 603 A 1 HETATM 22 C C6 ADP . . . D 4 -52.627 5.481 -12.682 1 23.96 ? C6 ADP 603 A 1 HETATM 23 N N6 ADP . . . D 4 -53.89 5.031 -12.839 1 24.44 ? N6 ADP 603 A 1 HETATM 24 N N1 ADP . . . D 4 -52.266 6.732 -13.061 1 24.13 ? N1 ADP 603 A 1 HETATM 25 C C2 ADP . . . D 4 -51.006 7.202 -12.911 1 23.9 ? C2 ADP 603 A 1 HETATM 26 N N3 ADP . . . D 4 -50.008 6.458 -12.378 1 23.68 ? N3 ADP 603 A 1 HETATM 27 C C4 ADP . . . D 4 -50.242 5.184 -11.958 1 23.95 ? C4 ADP 603 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1225 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 27 #