data_6EOF # _model_server_result.job_id 1JEdftyyz533xmN2f4UzpQ _model_server_result.datetime_utc '2025-08-29 21:40:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6EOF # _exptl.entry_id 6EOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EOF _cell.length_a 69.047 _cell.length_b 75.61 _cell.length_c 97.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG1 _struct_conn.ptnr1_label_comp_id THR _struct_conn.ptnr1_label_seq_id 491 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id THR _struct_conn.ptnr1_auth_seq_id 518 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P _struct_conn.ptnr2_label_comp_id AMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AMP _struct_conn.ptnr2_auth_seq_id 603 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.489 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6EOF _atom_sites.fract_transf_matrix[1][1] 0.014483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 601 1 ADP ADP . C 3 SO4 A 1 602 1 SO4 SO4 . D 4 AMP A 1 603 1 AMP AMP . E 5 HOH A 1 701 65 HOH HOH . E 5 HOH A 2 702 119 HOH HOH . E 5 HOH A 3 703 156 HOH HOH . E 5 HOH A 4 704 36 HOH HOH . E 5 HOH A 5 705 100 HOH HOH . E 5 HOH A 6 706 28 HOH HOH . E 5 HOH A 7 707 72 HOH HOH . E 5 HOH A 8 708 171 HOH HOH . E 5 HOH A 9 709 155 HOH HOH . E 5 HOH A 10 710 110 HOH HOH . E 5 HOH A 11 711 170 HOH HOH . E 5 HOH A 12 712 128 HOH HOH . E 5 HOH A 13 713 14 HOH HOH . E 5 HOH A 14 714 88 HOH HOH . E 5 HOH A 15 715 38 HOH HOH . E 5 HOH A 16 716 40 HOH HOH . E 5 HOH A 17 717 71 HOH HOH . E 5 HOH A 18 718 24 HOH HOH . E 5 HOH A 19 719 52 HOH HOH . E 5 HOH A 20 720 93 HOH HOH . E 5 HOH A 21 721 79 HOH HOH . E 5 HOH A 22 722 165 HOH HOH . E 5 HOH A 23 723 135 HOH HOH . E 5 HOH A 24 724 106 HOH HOH . E 5 HOH A 25 725 101 HOH HOH . E 5 HOH A 26 726 58 HOH HOH . E 5 HOH A 27 727 35 HOH HOH . E 5 HOH A 28 728 55 HOH HOH . E 5 HOH A 29 729 95 HOH HOH . E 5 HOH A 30 730 68 HOH HOH . E 5 HOH A 31 731 44 HOH HOH . E 5 HOH A 32 732 37 HOH HOH . E 5 HOH A 33 733 108 HOH HOH . E 5 HOH A 34 734 105 HOH HOH . E 5 HOH A 35 735 6 HOH HOH . E 5 HOH A 36 736 102 HOH HOH . E 5 HOH A 37 737 61 HOH HOH . E 5 HOH A 38 738 33 HOH HOH . E 5 HOH A 39 739 163 HOH HOH . E 5 HOH A 40 740 66 HOH HOH . E 5 HOH A 41 741 74 HOH HOH . E 5 HOH A 42 742 77 HOH HOH . E 5 HOH A 43 743 149 HOH HOH . E 5 HOH A 44 744 154 HOH HOH . E 5 HOH A 45 745 150 HOH HOH . E 5 HOH A 46 746 7 HOH HOH . E 5 HOH A 47 747 25 HOH HOH . E 5 HOH A 48 748 39 HOH HOH . E 5 HOH A 49 749 111 HOH HOH . E 5 HOH A 50 750 107 HOH HOH . E 5 HOH A 51 751 120 HOH HOH . E 5 HOH A 52 752 89 HOH HOH . E 5 HOH A 53 753 145 HOH HOH . E 5 HOH A 54 754 45 HOH HOH . E 5 HOH A 55 755 73 HOH HOH . E 5 HOH A 56 756 46 HOH HOH . E 5 HOH A 57 757 47 HOH HOH . E 5 HOH A 58 758 146 HOH HOH . E 5 HOH A 59 759 62 HOH HOH . E 5 HOH A 60 760 27 HOH HOH . E 5 HOH A 61 761 87 HOH HOH . E 5 HOH A 62 762 91 HOH HOH . E 5 HOH A 63 763 168 HOH HOH . E 5 HOH A 64 764 19 HOH HOH . E 5 HOH A 65 765 3 HOH HOH . E 5 HOH A 66 766 80 HOH HOH . E 5 HOH A 67 767 21 HOH HOH . E 5 HOH A 68 768 64 HOH HOH . E 5 HOH A 69 769 113 HOH HOH . E 5 HOH A 70 770 123 HOH HOH . E 5 HOH A 71 771 60 HOH HOH . E 5 HOH A 72 772 63 HOH HOH . E 5 HOH A 73 773 152 HOH HOH . E 5 HOH A 74 774 12 HOH HOH . E 5 HOH A 75 775 57 HOH HOH . E 5 HOH A 76 776 8 HOH HOH . E 5 HOH A 77 777 126 HOH HOH . E 5 HOH A 78 778 29 HOH HOH . E 5 HOH A 79 779 5 HOH HOH . E 5 HOH A 80 780 30 HOH HOH . E 5 HOH A 81 781 124 HOH HOH . E 5 HOH A 82 782 53 HOH HOH . E 5 HOH A 83 783 54 HOH HOH . E 5 HOH A 84 784 76 HOH HOH . E 5 HOH A 85 785 141 HOH HOH . E 5 HOH A 86 786 50 HOH HOH . E 5 HOH A 87 787 17 HOH HOH . E 5 HOH A 88 788 48 HOH HOH . E 5 HOH A 89 789 51 HOH HOH . E 5 HOH A 90 790 83 HOH HOH . E 5 HOH A 91 791 112 HOH HOH . E 5 HOH A 92 792 133 HOH HOH . E 5 HOH A 93 793 116 HOH HOH . E 5 HOH A 94 794 158 HOH HOH . E 5 HOH A 95 795 85 HOH HOH . E 5 HOH A 96 796 42 HOH HOH . E 5 HOH A 97 797 103 HOH HOH . E 5 HOH A 98 798 78 HOH HOH . E 5 HOH A 99 799 90 HOH HOH . E 5 HOH A 100 800 117 HOH HOH . E 5 HOH A 101 801 92 HOH HOH . E 5 HOH A 102 802 18 HOH HOH . E 5 HOH A 103 803 129 HOH HOH . E 5 HOH A 104 804 2 HOH HOH . E 5 HOH A 105 805 127 HOH HOH . E 5 HOH A 106 806 130 HOH HOH . E 5 HOH A 107 807 142 HOH HOH . E 5 HOH A 108 808 153 HOH HOH . E 5 HOH A 109 809 13 HOH HOH . E 5 HOH A 110 810 9 HOH HOH . E 5 HOH A 111 811 173 HOH HOH . E 5 HOH A 112 812 31 HOH HOH . E 5 HOH A 113 813 56 HOH HOH . E 5 HOH A 114 814 59 HOH HOH . E 5 HOH A 115 815 16 HOH HOH . E 5 HOH A 116 816 32 HOH HOH . E 5 HOH A 117 817 172 HOH HOH . E 5 HOH A 118 818 41 HOH HOH . E 5 HOH A 119 819 10 HOH HOH . E 5 HOH A 120 820 140 HOH HOH . E 5 HOH A 121 821 97 HOH HOH . E 5 HOH A 122 822 20 HOH HOH . E 5 HOH A 123 823 94 HOH HOH . E 5 HOH A 124 824 67 HOH HOH . E 5 HOH A 125 825 34 HOH HOH . E 5 HOH A 126 826 131 HOH HOH . E 5 HOH A 127 827 23 HOH HOH . E 5 HOH A 128 828 49 HOH HOH . E 5 HOH A 129 829 75 HOH HOH . E 5 HOH A 130 830 166 HOH HOH . E 5 HOH A 131 831 125 HOH HOH . E 5 HOH A 132 832 96 HOH HOH . E 5 HOH A 133 833 4 HOH HOH . E 5 HOH A 134 834 84 HOH HOH . E 5 HOH A 135 835 86 HOH HOH . E 5 HOH A 136 836 138 HOH HOH . E 5 HOH A 137 837 148 HOH HOH . E 5 HOH A 138 838 169 HOH HOH . E 5 HOH A 139 839 22 HOH HOH . E 5 HOH A 140 840 147 HOH HOH . E 5 HOH A 141 841 1 HOH HOH . E 5 HOH A 142 842 70 HOH HOH . E 5 HOH A 143 843 26 HOH HOH . E 5 HOH A 144 844 82 HOH HOH . E 5 HOH A 145 845 151 HOH HOH . E 5 HOH A 146 846 15 HOH HOH . E 5 HOH A 147 847 104 HOH HOH . E 5 HOH A 148 848 134 HOH HOH . E 5 HOH A 149 849 118 HOH HOH . E 5 HOH A 150 850 167 HOH HOH . E 5 HOH A 151 851 43 HOH HOH . E 5 HOH A 152 852 132 HOH HOH . E 5 HOH A 153 853 115 HOH HOH . E 5 HOH A 154 854 121 HOH HOH . E 5 HOH A 155 855 98 HOH HOH . E 5 HOH A 156 856 122 HOH HOH . E 5 HOH A 157 857 137 HOH HOH . E 5 HOH A 158 858 114 HOH HOH . E 5 HOH A 159 859 81 HOH HOH . E 5 HOH A 160 860 161 HOH HOH . E 5 HOH A 161 861 136 HOH HOH . E 5 HOH A 162 862 162 HOH HOH . E 5 HOH A 163 863 11 HOH HOH . E 5 HOH A 164 864 69 HOH HOH . E 5 HOH A 165 865 164 HOH HOH . E 5 HOH A 166 866 99 HOH HOH . E 5 HOH A 167 867 159 HOH HOH . E 5 HOH A 168 868 139 HOH HOH . E 5 HOH A 169 869 157 HOH HOH . E 5 HOH A 170 870 144 HOH HOH . E 5 HOH A 171 871 143 HOH HOH . E 5 HOH A 172 872 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -43.374 -0.965 -10.203 1 24.93 ? PB ADP 601 A 1 HETATM 2 O O1B ADP . . . B 2 -42.917 0.101 -11.161 1 28.78 ? O1B ADP 601 A 1 HETATM 3 O O2B ADP . . . B 2 -43.004 -2.36 -10.642 1 29.29 ? O2B ADP 601 A 1 HETATM 4 O O3B ADP . . . B 2 -43.072 -0.692 -8.756 1 30.47 ? O3B ADP 601 A 1 HETATM 5 P PA ADP . . . B 2 -45.996 -0.514 -11.397 1 24.66 ? PA ADP 601 A 1 HETATM 6 O O1A ADP . . . B 2 -45.569 -1.032 -12.736 1 26.14 ? O1A ADP 601 A 1 HETATM 7 O O2A ADP . . . B 2 -47.358 -0.928 -10.875 1 28.04 ? O2A ADP 601 A 1 HETATM 8 O O3A ADP . . . B 2 -44.983 -0.939 -10.214 1 26.71 ? O3A ADP 601 A 1 HETATM 9 O O5' ADP . . . B 2 -45.951 1.076 -11.495 1 24.91 ? O5' ADP 601 A 1 HETATM 10 C C5' ADP . . . B 2 -45.929 1.842 -10.31 1 23.89 ? C5' ADP 601 A 1 HETATM 11 C C4' ADP . . . B 2 -46.095 3.289 -10.69 1 23.53 ? C4' ADP 601 A 1 HETATM 12 O O4' ADP . . . B 2 -47.272 3.42 -11.488 1 23.73 ? O4' ADP 601 A 1 HETATM 13 C C3' ADP . . . B 2 -46.257 4.186 -9.473 1 23.42 ? C3' ADP 601 A 1 HETATM 14 O O3' ADP . . . B 2 -45.422 5.33 -9.618 1 22.97 ? O3' ADP 601 A 1 HETATM 15 C C2' ADP . . . B 2 -47.707 4.599 -9.525 1 23.89 ? C2' ADP 601 A 1 HETATM 16 O O2' ADP . . . B 2 -47.929 5.909 -9.011 1 24.62 ? O2' ADP 601 A 1 HETATM 17 C C1' ADP . . . B 2 -47.974 4.555 -11.014 1 24.02 ? C1' ADP 601 A 1 HETATM 18 N N9 ADP . . . B 2 -49.415 4.45 -11.315 1 23.73 ? N9 ADP 601 A 1 HETATM 19 C C8 ADP . . . B 2 -50.21 3.394 -11.066 1 24.69 ? C8 ADP 601 A 1 HETATM 20 N N7 ADP . . . B 2 -51.48 3.652 -11.477 1 25.12 ? N7 ADP 601 A 1 HETATM 21 C C5 ADP . . . B 2 -51.49 4.892 -11.992 1 24.18 ? C5 ADP 601 A 1 HETATM 22 C C6 ADP . . . B 2 -52.499 5.792 -12.596 1 25.09 ? C6 ADP 601 A 1 HETATM 23 N N6 ADP . . . B 2 -53.78 5.392 -12.732 1 25.93 ? N6 ADP 601 A 1 HETATM 24 N N1 ADP . . . B 2 -52.085 7.013 -13 1 25.17 ? N1 ADP 601 A 1 HETATM 25 C C2 ADP . . . B 2 -50.811 7.442 -12.878 1 25.32 ? C2 ADP 601 A 1 HETATM 26 N N3 ADP . . . B 2 -49.842 6.676 -12.329 1 24.52 ? N3 ADP 601 A 1 HETATM 27 C C4 ADP . . . B 2 -50.123 5.421 -11.885 1 24.61 ? C4 ADP 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #