data_6EOF # _model_server_result.job_id EOfkdikLW-l27UK_rUM8hA _model_server_result.datetime_utc '2025-08-29 21:40:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6EOF # _exptl.entry_id 6EOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EOF _cell.length_a 69.047 _cell.length_b 75.61 _cell.length_c 97.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG1 _struct_conn.ptnr1_label_comp_id THR _struct_conn.ptnr1_label_seq_id 491 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id THR _struct_conn.ptnr1_auth_seq_id 518 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id P _struct_conn.ptnr2_label_comp_id AMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AMP _struct_conn.ptnr2_auth_seq_id 603 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.489 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 6EOF _atom_sites.fract_transf_matrix[1][1] 0.014483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 601 1 ADP ADP . C 3 SO4 A 1 602 1 SO4 SO4 . D 4 AMP A 1 603 1 AMP AMP . E 5 HOH A 1 701 65 HOH HOH . E 5 HOH A 2 702 119 HOH HOH . E 5 HOH A 3 703 156 HOH HOH . E 5 HOH A 4 704 36 HOH HOH . E 5 HOH A 5 705 100 HOH HOH . E 5 HOH A 6 706 28 HOH HOH . E 5 HOH A 7 707 72 HOH HOH . E 5 HOH A 8 708 171 HOH HOH . E 5 HOH A 9 709 155 HOH HOH . E 5 HOH A 10 710 110 HOH HOH . E 5 HOH A 11 711 170 HOH HOH . E 5 HOH A 12 712 128 HOH HOH . E 5 HOH A 13 713 14 HOH HOH . E 5 HOH A 14 714 88 HOH HOH . E 5 HOH A 15 715 38 HOH HOH . E 5 HOH A 16 716 40 HOH HOH . E 5 HOH A 17 717 71 HOH HOH . E 5 HOH A 18 718 24 HOH HOH . E 5 HOH A 19 719 52 HOH HOH . E 5 HOH A 20 720 93 HOH HOH . E 5 HOH A 21 721 79 HOH HOH . E 5 HOH A 22 722 165 HOH HOH . E 5 HOH A 23 723 135 HOH HOH . E 5 HOH A 24 724 106 HOH HOH . E 5 HOH A 25 725 101 HOH HOH . E 5 HOH A 26 726 58 HOH HOH . E 5 HOH A 27 727 35 HOH HOH . E 5 HOH A 28 728 55 HOH HOH . E 5 HOH A 29 729 95 HOH HOH . E 5 HOH A 30 730 68 HOH HOH . E 5 HOH A 31 731 44 HOH HOH . E 5 HOH A 32 732 37 HOH HOH . E 5 HOH A 33 733 108 HOH HOH . E 5 HOH A 34 734 105 HOH HOH . E 5 HOH A 35 735 6 HOH HOH . E 5 HOH A 36 736 102 HOH HOH . E 5 HOH A 37 737 61 HOH HOH . E 5 HOH A 38 738 33 HOH HOH . E 5 HOH A 39 739 163 HOH HOH . E 5 HOH A 40 740 66 HOH HOH . E 5 HOH A 41 741 74 HOH HOH . E 5 HOH A 42 742 77 HOH HOH . E 5 HOH A 43 743 149 HOH HOH . E 5 HOH A 44 744 154 HOH HOH . E 5 HOH A 45 745 150 HOH HOH . E 5 HOH A 46 746 7 HOH HOH . E 5 HOH A 47 747 25 HOH HOH . E 5 HOH A 48 748 39 HOH HOH . E 5 HOH A 49 749 111 HOH HOH . E 5 HOH A 50 750 107 HOH HOH . E 5 HOH A 51 751 120 HOH HOH . E 5 HOH A 52 752 89 HOH HOH . E 5 HOH A 53 753 145 HOH HOH . E 5 HOH A 54 754 45 HOH HOH . E 5 HOH A 55 755 73 HOH HOH . E 5 HOH A 56 756 46 HOH HOH . E 5 HOH A 57 757 47 HOH HOH . E 5 HOH A 58 758 146 HOH HOH . E 5 HOH A 59 759 62 HOH HOH . E 5 HOH A 60 760 27 HOH HOH . E 5 HOH A 61 761 87 HOH HOH . E 5 HOH A 62 762 91 HOH HOH . E 5 HOH A 63 763 168 HOH HOH . E 5 HOH A 64 764 19 HOH HOH . E 5 HOH A 65 765 3 HOH HOH . E 5 HOH A 66 766 80 HOH HOH . E 5 HOH A 67 767 21 HOH HOH . E 5 HOH A 68 768 64 HOH HOH . E 5 HOH A 69 769 113 HOH HOH . E 5 HOH A 70 770 123 HOH HOH . E 5 HOH A 71 771 60 HOH HOH . E 5 HOH A 72 772 63 HOH HOH . E 5 HOH A 73 773 152 HOH HOH . E 5 HOH A 74 774 12 HOH HOH . E 5 HOH A 75 775 57 HOH HOH . E 5 HOH A 76 776 8 HOH HOH . E 5 HOH A 77 777 126 HOH HOH . E 5 HOH A 78 778 29 HOH HOH . E 5 HOH A 79 779 5 HOH HOH . E 5 HOH A 80 780 30 HOH HOH . E 5 HOH A 81 781 124 HOH HOH . E 5 HOH A 82 782 53 HOH HOH . E 5 HOH A 83 783 54 HOH HOH . E 5 HOH A 84 784 76 HOH HOH . E 5 HOH A 85 785 141 HOH HOH . E 5 HOH A 86 786 50 HOH HOH . E 5 HOH A 87 787 17 HOH HOH . E 5 HOH A 88 788 48 HOH HOH . E 5 HOH A 89 789 51 HOH HOH . E 5 HOH A 90 790 83 HOH HOH . E 5 HOH A 91 791 112 HOH HOH . E 5 HOH A 92 792 133 HOH HOH . E 5 HOH A 93 793 116 HOH HOH . E 5 HOH A 94 794 158 HOH HOH . E 5 HOH A 95 795 85 HOH HOH . E 5 HOH A 96 796 42 HOH HOH . E 5 HOH A 97 797 103 HOH HOH . E 5 HOH A 98 798 78 HOH HOH . E 5 HOH A 99 799 90 HOH HOH . E 5 HOH A 100 800 117 HOH HOH . E 5 HOH A 101 801 92 HOH HOH . E 5 HOH A 102 802 18 HOH HOH . E 5 HOH A 103 803 129 HOH HOH . E 5 HOH A 104 804 2 HOH HOH . E 5 HOH A 105 805 127 HOH HOH . E 5 HOH A 106 806 130 HOH HOH . E 5 HOH A 107 807 142 HOH HOH . E 5 HOH A 108 808 153 HOH HOH . E 5 HOH A 109 809 13 HOH HOH . E 5 HOH A 110 810 9 HOH HOH . E 5 HOH A 111 811 173 HOH HOH . E 5 HOH A 112 812 31 HOH HOH . E 5 HOH A 113 813 56 HOH HOH . E 5 HOH A 114 814 59 HOH HOH . E 5 HOH A 115 815 16 HOH HOH . E 5 HOH A 116 816 32 HOH HOH . E 5 HOH A 117 817 172 HOH HOH . E 5 HOH A 118 818 41 HOH HOH . E 5 HOH A 119 819 10 HOH HOH . E 5 HOH A 120 820 140 HOH HOH . E 5 HOH A 121 821 97 HOH HOH . E 5 HOH A 122 822 20 HOH HOH . E 5 HOH A 123 823 94 HOH HOH . E 5 HOH A 124 824 67 HOH HOH . E 5 HOH A 125 825 34 HOH HOH . E 5 HOH A 126 826 131 HOH HOH . E 5 HOH A 127 827 23 HOH HOH . E 5 HOH A 128 828 49 HOH HOH . E 5 HOH A 129 829 75 HOH HOH . E 5 HOH A 130 830 166 HOH HOH . E 5 HOH A 131 831 125 HOH HOH . E 5 HOH A 132 832 96 HOH HOH . E 5 HOH A 133 833 4 HOH HOH . E 5 HOH A 134 834 84 HOH HOH . E 5 HOH A 135 835 86 HOH HOH . E 5 HOH A 136 836 138 HOH HOH . E 5 HOH A 137 837 148 HOH HOH . E 5 HOH A 138 838 169 HOH HOH . E 5 HOH A 139 839 22 HOH HOH . E 5 HOH A 140 840 147 HOH HOH . E 5 HOH A 141 841 1 HOH HOH . E 5 HOH A 142 842 70 HOH HOH . E 5 HOH A 143 843 26 HOH HOH . E 5 HOH A 144 844 82 HOH HOH . E 5 HOH A 145 845 151 HOH HOH . E 5 HOH A 146 846 15 HOH HOH . E 5 HOH A 147 847 104 HOH HOH . E 5 HOH A 148 848 134 HOH HOH . E 5 HOH A 149 849 118 HOH HOH . E 5 HOH A 150 850 167 HOH HOH . E 5 HOH A 151 851 43 HOH HOH . E 5 HOH A 152 852 132 HOH HOH . E 5 HOH A 153 853 115 HOH HOH . E 5 HOH A 154 854 121 HOH HOH . E 5 HOH A 155 855 98 HOH HOH . E 5 HOH A 156 856 122 HOH HOH . E 5 HOH A 157 857 137 HOH HOH . E 5 HOH A 158 858 114 HOH HOH . E 5 HOH A 159 859 81 HOH HOH . E 5 HOH A 160 860 161 HOH HOH . E 5 HOH A 161 861 136 HOH HOH . E 5 HOH A 162 862 162 HOH HOH . E 5 HOH A 163 863 11 HOH HOH . E 5 HOH A 164 864 69 HOH HOH . E 5 HOH A 165 865 164 HOH HOH . E 5 HOH A 166 866 99 HOH HOH . E 5 HOH A 167 867 159 HOH HOH . E 5 HOH A 168 868 139 HOH HOH . E 5 HOH A 169 869 157 HOH HOH . E 5 HOH A 170 870 144 HOH HOH . E 5 HOH A 171 871 143 HOH HOH . E 5 HOH A 172 872 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 4 10.369 -18.095 -24.244 1 50.42 ? P AMP 603 A 1 HETATM 2 O O1P AMP . . . D 4 10.618 -19.418 -24.931 1 53.79 ? O1P AMP 603 A 1 HETATM 3 O O2P AMP . . . D 4 10.581 -16.814 -25.018 1 52.65 ? O2P AMP 603 A 1 HETATM 4 O O5' AMP . . . D 4 11.312 -18.06 -22.936 1 51.1 ? O5' AMP 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #