data_6EOH # _model_server_result.job_id 034k9A-LvzqH8tgKLgsz-Q _model_server_result.datetime_utc '2025-02-05 14:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eoh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6EOH # _exptl.entry_id 6EOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.84 _cell.angle_gamma 90 _cell.entry_id 6EOH _cell.length_a 38.95 _cell.length_b 162.954 _cell.length_c 48.155 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 258 n n PA O2A NAP sing 259 n n PA O5B NAP sing 260 n n PA O3 NAP sing 261 n n O2A HOA2 NAP sing 262 n n O5B C5B NAP sing 263 n n C5B C4B NAP sing 264 n n C5B H51A NAP sing 265 n n C5B H52A NAP sing 266 n n C4B O4B NAP sing 267 n n C4B C3B NAP sing 268 n n C4B H4B NAP sing 269 n n O4B C1B NAP sing 270 n n C3B O3B NAP sing 271 n n C3B C2B NAP sing 272 n n C3B H3B NAP sing 273 n n O3B HO3A NAP sing 274 n n C2B O2B NAP sing 275 n n C2B C1B NAP sing 276 n n C2B H2B NAP sing 277 n n O2B P2B NAP sing 278 n n C1B N9A NAP sing 279 n n C1B H1B NAP sing 280 n n N9A C8A NAP sing 281 n y N9A C4A NAP sing 282 n y C8A N7A NAP doub 283 n y C8A H8A NAP sing 284 n n N7A C5A NAP sing 285 n y C5A C6A NAP sing 286 n y C5A C4A NAP doub 287 n y C6A N6A NAP sing 288 n n C6A N1A NAP doub 289 n y N6A H61A NAP sing 290 n n N6A H62A NAP sing 291 n n N1A C2A NAP sing 292 n y C2A N3A NAP doub 293 n y C2A H2A NAP sing 294 n n N3A C4A NAP sing 295 n y O3 PN NAP sing 296 n n PN O1N NAP doub 297 n n PN O2N NAP sing 298 n n PN O5D NAP sing 299 n n O5D C5D NAP sing 300 n n C5D C4D NAP sing 301 n n C5D H51N NAP sing 302 n n C5D H52N NAP sing 303 n n C4D O4D NAP sing 304 n n C4D C3D NAP sing 305 n n C4D H4D NAP sing 306 n n O4D C1D NAP sing 307 n n C3D O3D NAP sing 308 n n C3D C2D NAP sing 309 n n C3D H3D NAP sing 310 n n O3D HO3N NAP sing 311 n n C2D O2D NAP sing 312 n n C2D C1D NAP sing 313 n n C2D H2D NAP sing 314 n n O2D HO2N NAP sing 315 n n C1D N1N NAP sing 316 n n C1D H1D NAP sing 317 n n N1N C2N NAP sing 318 n y N1N C6N NAP doub 319 n y C2N C3N NAP doub 320 n y C2N H2N NAP sing 321 n n C3N C7N NAP sing 322 n n C3N C4N NAP sing 323 n y C7N O7N NAP doub 324 n n C7N N7N NAP sing 325 n n N7N H71N NAP sing 326 n n N7N H72N NAP sing 327 n n C4N C5N NAP doub 328 n y C4N H4N NAP sing 329 n n C5N C6N NAP sing 330 n y C5N H5N NAP sing 331 n n C6N H6N NAP sing 332 n n P2B O1X NAP doub 333 n n P2B O2X NAP sing 334 n n P2B O3X NAP sing 335 n n O2X HOP2 NAP sing 336 n n O3X HOP3 NAP sing 337 n n # _atom_sites.entry_id 6EOH _atom_sites.fract_transf_matrix[1][1] 0.025674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 2 NAP NAP . D 2 NAP B 1 301 1 NAP NAP . E 3 BKQ B 1 302 1 BKQ DRG . F 4 HOH A 1 401 73 HOH HOH . F 4 HOH A 2 402 78 HOH HOH . F 4 HOH A 3 403 109 HOH HOH . F 4 HOH A 4 404 32 HOH HOH . F 4 HOH A 5 405 94 HOH HOH . F 4 HOH A 6 406 106 HOH HOH . F 4 HOH A 7 407 9 HOH HOH . F 4 HOH A 8 408 83 HOH HOH . F 4 HOH A 9 409 10 HOH HOH . F 4 HOH A 10 410 33 HOH HOH . F 4 HOH A 11 411 50 HOH HOH . F 4 HOH A 12 412 37 HOH HOH . F 4 HOH A 13 413 47 HOH HOH . F 4 HOH A 14 414 29 HOH HOH . F 4 HOH A 15 415 76 HOH HOH . F 4 HOH A 16 416 36 HOH HOH . F 4 HOH A 17 417 23 HOH HOH . F 4 HOH A 18 418 75 HOH HOH . F 4 HOH A 19 419 118 HOH HOH . F 4 HOH A 20 420 70 HOH HOH . F 4 HOH A 21 421 19 HOH HOH . F 4 HOH A 22 422 24 HOH HOH . F 4 HOH A 23 423 44 HOH HOH . F 4 HOH A 24 424 20 HOH HOH . F 4 HOH A 25 425 41 HOH HOH . F 4 HOH A 26 426 116 HOH HOH . F 4 HOH A 27 427 18 HOH HOH . F 4 HOH A 28 428 77 HOH HOH . F 4 HOH A 29 429 49 HOH HOH . F 4 HOH A 30 430 85 HOH HOH . F 4 HOH A 31 431 34 HOH HOH . F 4 HOH A 32 432 114 HOH HOH . F 4 HOH A 33 433 72 HOH HOH . F 4 HOH A 34 434 119 HOH HOH . F 4 HOH A 35 435 117 HOH HOH . F 4 HOH A 36 436 89 HOH HOH . F 4 HOH A 37 437 69 HOH HOH . F 4 HOH A 38 438 115 HOH HOH . F 4 HOH A 39 439 97 HOH HOH . F 4 HOH A 40 440 86 HOH HOH . F 4 HOH A 41 441 92 HOH HOH . F 4 HOH A 42 442 105 HOH HOH . G 4 HOH B 1 401 112 HOH HOH . G 4 HOH B 2 402 104 HOH HOH . G 4 HOH B 3 403 120 HOH HOH . G 4 HOH B 4 404 101 HOH HOH . G 4 HOH B 5 405 51 HOH HOH . G 4 HOH B 6 406 107 HOH HOH . G 4 HOH B 7 407 88 HOH HOH . G 4 HOH B 8 408 82 HOH HOH . G 4 HOH B 9 409 87 HOH HOH . G 4 HOH B 10 410 74 HOH HOH . G 4 HOH B 11 411 13 HOH HOH . G 4 HOH B 12 412 71 HOH HOH . G 4 HOH B 13 413 39 HOH HOH . G 4 HOH B 14 414 43 HOH HOH . G 4 HOH B 15 415 100 HOH HOH . G 4 HOH B 16 416 46 HOH HOH . G 4 HOH B 17 417 108 HOH HOH . G 4 HOH B 18 418 90 HOH HOH . G 4 HOH B 19 419 40 HOH HOH . G 4 HOH B 20 420 28 HOH HOH . G 4 HOH B 21 421 79 HOH HOH . G 4 HOH B 22 422 17 HOH HOH . G 4 HOH B 23 423 110 HOH HOH . G 4 HOH B 24 424 5 HOH HOH . G 4 HOH B 25 425 54 HOH HOH . G 4 HOH B 26 426 84 HOH HOH . G 4 HOH B 27 427 21 HOH HOH . G 4 HOH B 28 428 11 HOH HOH . G 4 HOH B 29 429 102 HOH HOH . G 4 HOH B 30 430 26 HOH HOH . G 4 HOH B 31 431 91 HOH HOH . G 4 HOH B 32 432 25 HOH HOH . G 4 HOH B 33 433 61 HOH HOH . G 4 HOH B 34 434 38 HOH HOH . G 4 HOH B 35 435 81 HOH HOH . G 4 HOH B 36 436 80 HOH HOH . G 4 HOH B 37 437 98 HOH HOH . G 4 HOH B 38 438 95 HOH HOH . G 4 HOH B 39 439 93 HOH HOH . G 4 HOH B 40 440 62 HOH HOH . G 4 HOH B 41 441 58 HOH HOH . G 4 HOH B 42 442 121 HOH HOH . G 4 HOH B 43 443 113 HOH HOH . G 4 HOH B 44 444 103 HOH HOH . G 4 HOH B 45 445 99 HOH HOH . G 4 HOH B 46 446 65 HOH HOH . G 4 HOH B 47 447 96 HOH HOH . G 4 HOH B 48 448 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 8.432 4.479 23.916 1 28.23 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . C 2 9.903 4.222 24.093 1 23.6 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . C 2 7.364 4.007 24.896 1 25.74 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . C 2 8.24 6.056 23.89 1 30.68 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . C 2 6.955 6.69 23.852 1 27.56 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . C 2 7.242 8.115 23.451 1 28.33 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . C 2 5.991 8.815 23.313 1 28.13 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . C 2 8.03 8.924 24.489 1 28.56 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . C 2 8.747 10 23.92 1 24.87 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . C 2 6.899 9.581 25.286 1 28.39 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . C 2 7.2 10.766 26.059 1 28.89 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . C 2 6.003 9.963 24.137 1 28.59 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . C 2 4.612 10.22 24.555 1 31.6 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . C 2 3.714 9.351 25.046 1 28.34 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . C 2 2.527 9.983 25.268 1 29.51 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . C 2 2.705 11.256 24.875 1 30.75 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . C 2 1.913 12.47 24.807 1 30.31 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . C 2 0.643 12.456 25.191 1 32.09 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . C 2 2.483 13.574 24.284 1 33.71 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . C 2 3.78 13.646 23.862 1 33.44 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . C 2 4.607 12.589 23.92 1 31.34 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . C 2 4.094 11.405 24.387 1 30.8 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . C 2 8.008 4.115 22.37 1 25.07 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . C 2 9.058 3.836 21.169 1 27.86 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . C 2 10.179 4.845 21.109 1 28.7 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . C 2 9.436 2.409 21.171 1 26.12 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . C 2 8.038 3.975 19.935 1 28.62 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . C 2 7.665 5.24 19.375 1 29.69 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . C 2 6.968 4.994 18.046 1 27.97 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . C 2 7.842 4.204 17.248 1 27.91 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . C 2 5.637 4.199 18.168 1 28.76 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . C 2 4.637 4.811 17.37 1 30.11 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . C 2 6.046 2.823 17.691 1 28.82 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . C 2 5.027 1.963 17.218 1 29.22 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . C 2 7.138 3.124 16.68 1 26.89 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . C 2 8.01 1.96 16.53 1 26.48 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . C 2 8.735 1.462 17.562 1 29.05 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . C 2 9.582 0.343 17.379 1 27.08 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . C 2 10.374 -0.322 18.456 1 29.44 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . C 2 10.868 -1.439 18.187 1 26.72 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . C 2 10.469 0.246 19.683 1 26.69 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . C 2 9.578 -0.286 16.136 1 26.31 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . C 2 8.861 0.252 15.124 1 24.54 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . C 2 8.084 1.379 15.325 1 25.83 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . C 2 7.694 10.618 27.587 1 31.44 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . C 2 9.169 10.261 27.388 1 29.74 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . C 2 7.442 11.997 28.056 1 32.2 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . C 2 6.772 9.642 28.206 1 28.14 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 1150 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 48 #