data_6EOI # _model_server_result.job_id etY-Ktx4ESoFwK3og6WWvA _model_server_result.datetime_utc '2024-12-02 02:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eoi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6EOI # _exptl.entry_id 6EOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.195 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 5-oxohexanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.36 _cell.angle_gamma 90 _cell.entry_id 6EOI _cell.length_a 39.128 _cell.length_b 165.04 _cell.length_c 46.527 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 100 A THR 100 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc2 B O THR 100 B THR 100 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc3 B OG SER 172 B SER 172 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? # _chem_comp.formula 'C8 H14 O3' _chem_comp.formula_weight 158.195 _chem_comp.id BKN _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 5-oxohexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAJ BKN sing 70 n n CAJ OAC BKN doub 71 n n CAJ CAG BKN sing 72 n n CAG CAF BKN sing 73 n n CAF CAH BKN sing 74 n n CAH CAK BKN sing 75 n n OAD CAK BKN doub 76 n n CAK OAI BKN sing 77 n n OAI CAE BKN sing 78 n n CAE CAA BKN sing 79 n n CAA H1 BKN sing 80 n n CAA H2 BKN sing 81 n n CAA H3 BKN sing 82 n n CAE H4 BKN sing 83 n n CAE H5 BKN sing 84 n n CAH H6 BKN sing 85 n n CAH H7 BKN sing 86 n n CAF H8 BKN sing 87 n n CAF H9 BKN sing 88 n n CAG H10 BKN sing 89 n n CAG H11 BKN sing 90 n n CAB H12 BKN sing 91 n n CAB H13 BKN sing 92 n n CAB H14 BKN sing 93 n n # _atom_sites.entry_id 6EOI _atom_sites.fract_transf_matrix[1][1] 0.025557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007019 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 2 MG MG . D 3 NAP A 1 302 1 NAP NAP . E 4 BKN A 1 303 1 BKN DRG . F 2 MG B 1 301 1 MG MG . G 3 NAP B 1 302 2 NAP NAP . H 4 BKN B 1 303 2 BKN DRG . I 5 HOH A 1 401 135 HOH HOH . I 5 HOH A 2 402 190 HOH HOH . I 5 HOH A 3 403 37 HOH HOH . I 5 HOH A 4 404 171 HOH HOH . I 5 HOH A 5 405 160 HOH HOH . I 5 HOH A 6 406 189 HOH HOH . I 5 HOH A 7 407 166 HOH HOH . I 5 HOH A 8 408 183 HOH HOH . I 5 HOH A 9 409 159 HOH HOH . I 5 HOH A 10 410 53 HOH HOH . I 5 HOH A 11 411 173 HOH HOH . I 5 HOH A 12 412 116 HOH HOH . I 5 HOH A 13 413 59 HOH HOH . I 5 HOH A 14 414 9 HOH HOH . I 5 HOH A 15 415 158 HOH HOH . I 5 HOH A 16 416 82 HOH HOH . I 5 HOH A 17 417 111 HOH HOH . I 5 HOH A 18 418 100 HOH HOH . I 5 HOH A 19 419 44 HOH HOH . I 5 HOH A 20 420 154 HOH HOH . I 5 HOH A 21 421 120 HOH HOH . I 5 HOH A 22 422 112 HOH HOH . I 5 HOH A 23 423 17 HOH HOH . I 5 HOH A 24 424 81 HOH HOH . I 5 HOH A 25 425 140 HOH HOH . I 5 HOH A 26 426 32 HOH HOH . I 5 HOH A 27 427 65 HOH HOH . I 5 HOH A 28 428 95 HOH HOH . I 5 HOH A 29 429 49 HOH HOH . I 5 HOH A 30 430 107 HOH HOH . I 5 HOH A 31 431 174 HOH HOH . I 5 HOH A 32 432 46 HOH HOH . I 5 HOH A 33 433 145 HOH HOH . I 5 HOH A 34 434 141 HOH HOH . I 5 HOH A 35 435 57 HOH HOH . I 5 HOH A 36 436 4 HOH HOH . I 5 HOH A 37 437 124 HOH HOH . I 5 HOH A 38 438 103 HOH HOH . I 5 HOH A 39 439 10 HOH HOH . I 5 HOH A 40 440 90 HOH HOH . I 5 HOH A 41 441 89 HOH HOH . I 5 HOH A 42 442 129 HOH HOH . I 5 HOH A 43 443 40 HOH HOH . I 5 HOH A 44 444 109 HOH HOH . I 5 HOH A 45 445 150 HOH HOH . I 5 HOH A 46 446 74 HOH HOH . I 5 HOH A 47 447 30 HOH HOH . I 5 HOH A 48 448 151 HOH HOH . I 5 HOH A 49 449 105 HOH HOH . I 5 HOH A 50 450 34 HOH HOH . I 5 HOH A 51 451 3 HOH HOH . I 5 HOH A 52 452 12 HOH HOH . I 5 HOH A 53 453 33 HOH HOH . I 5 HOH A 54 454 185 HOH HOH . I 5 HOH A 55 455 191 HOH HOH . I 5 HOH A 56 456 84 HOH HOH . I 5 HOH A 57 457 48 HOH HOH . I 5 HOH A 58 458 66 HOH HOH . I 5 HOH A 59 459 14 HOH HOH . I 5 HOH A 60 460 161 HOH HOH . I 5 HOH A 61 461 149 HOH HOH . I 5 HOH A 62 462 133 HOH HOH . I 5 HOH A 63 463 101 HOH HOH . I 5 HOH A 64 464 126 HOH HOH . I 5 HOH A 65 465 175 HOH HOH . I 5 HOH A 66 466 153 HOH HOH . I 5 HOH A 67 467 102 HOH HOH . I 5 HOH A 68 468 123 HOH HOH . I 5 HOH A 69 469 63 HOH HOH . I 5 HOH A 70 470 51 HOH HOH . I 5 HOH A 71 471 39 HOH HOH . I 5 HOH A 72 472 163 HOH HOH . I 5 HOH A 73 473 152 HOH HOH . I 5 HOH A 74 474 104 HOH HOH . I 5 HOH A 75 475 52 HOH HOH . I 5 HOH A 76 476 62 HOH HOH . I 5 HOH A 77 477 92 HOH HOH . I 5 HOH A 78 478 36 HOH HOH . I 5 HOH A 79 479 71 HOH HOH . I 5 HOH A 80 480 117 HOH HOH . I 5 HOH A 81 481 164 HOH HOH . I 5 HOH A 82 482 162 HOH HOH . I 5 HOH A 83 483 73 HOH HOH . I 5 HOH A 84 484 115 HOH HOH . I 5 HOH A 85 485 188 HOH HOH . I 5 HOH A 86 486 61 HOH HOH . I 5 HOH A 87 487 176 HOH HOH . I 5 HOH A 88 488 91 HOH HOH . I 5 HOH A 89 489 127 HOH HOH . I 5 HOH A 90 490 167 HOH HOH . I 5 HOH A 91 491 157 HOH HOH . I 5 HOH A 92 492 125 HOH HOH . I 5 HOH A 93 493 68 HOH HOH . I 5 HOH A 94 494 184 HOH HOH . I 5 HOH A 95 495 137 HOH HOH . I 5 HOH A 96 496 132 HOH HOH . I 5 HOH A 97 497 139 HOH HOH . J 5 HOH B 1 401 165 HOH HOH . J 5 HOH B 2 402 67 HOH HOH . J 5 HOH B 3 403 64 HOH HOH . J 5 HOH B 4 404 80 HOH HOH . J 5 HOH B 5 405 55 HOH HOH . J 5 HOH B 6 406 25 HOH HOH . J 5 HOH B 7 407 193 HOH HOH . J 5 HOH B 8 408 15 HOH HOH . J 5 HOH B 9 409 5 HOH HOH . J 5 HOH B 10 410 83 HOH HOH . J 5 HOH B 11 411 147 HOH HOH . J 5 HOH B 12 412 187 HOH HOH . J 5 HOH B 13 413 58 HOH HOH . J 5 HOH B 14 414 136 HOH HOH . J 5 HOH B 15 415 179 HOH HOH . J 5 HOH B 16 416 79 HOH HOH . J 5 HOH B 17 417 2 HOH HOH . J 5 HOH B 18 418 180 HOH HOH . J 5 HOH B 19 419 172 HOH HOH . J 5 HOH B 20 420 143 HOH HOH . J 5 HOH B 21 421 27 HOH HOH . J 5 HOH B 22 422 13 HOH HOH . J 5 HOH B 23 423 18 HOH HOH . J 5 HOH B 24 424 144 HOH HOH . J 5 HOH B 25 425 87 HOH HOH . J 5 HOH B 26 426 138 HOH HOH . J 5 HOH B 27 427 72 HOH HOH . J 5 HOH B 28 428 94 HOH HOH . J 5 HOH B 29 429 60 HOH HOH . J 5 HOH B 30 430 43 HOH HOH . J 5 HOH B 31 431 54 HOH HOH . J 5 HOH B 32 432 19 HOH HOH . J 5 HOH B 33 433 155 HOH HOH . J 5 HOH B 34 434 29 HOH HOH . J 5 HOH B 35 435 16 HOH HOH . J 5 HOH B 36 436 24 HOH HOH . J 5 HOH B 37 437 142 HOH HOH . J 5 HOH B 38 438 45 HOH HOH . J 5 HOH B 39 439 28 HOH HOH . J 5 HOH B 40 440 182 HOH HOH . J 5 HOH B 41 441 122 HOH HOH . J 5 HOH B 42 442 97 HOH HOH . J 5 HOH B 43 443 168 HOH HOH . J 5 HOH B 44 444 7 HOH HOH . J 5 HOH B 45 445 88 HOH HOH . J 5 HOH B 46 446 26 HOH HOH . J 5 HOH B 47 447 47 HOH HOH . J 5 HOH B 48 448 113 HOH HOH . J 5 HOH B 49 449 181 HOH HOH . J 5 HOH B 50 450 146 HOH HOH . J 5 HOH B 51 451 50 HOH HOH . J 5 HOH B 52 452 169 HOH HOH . J 5 HOH B 53 453 186 HOH HOH . J 5 HOH B 54 454 75 HOH HOH . J 5 HOH B 55 455 56 HOH HOH . J 5 HOH B 56 456 131 HOH HOH . J 5 HOH B 57 457 69 HOH HOH . J 5 HOH B 58 458 134 HOH HOH . J 5 HOH B 59 459 108 HOH HOH . J 5 HOH B 60 460 121 HOH HOH . J 5 HOH B 61 461 148 HOH HOH . J 5 HOH B 62 462 8 HOH HOH . J 5 HOH B 63 463 128 HOH HOH . J 5 HOH B 64 464 170 HOH HOH . J 5 HOH B 65 465 85 HOH HOH . J 5 HOH B 66 466 130 HOH HOH . J 5 HOH B 67 467 76 HOH HOH . J 5 HOH B 68 468 119 HOH HOH . J 5 HOH B 69 469 192 HOH HOH . J 5 HOH B 70 470 38 HOH HOH . J 5 HOH B 71 471 22 HOH HOH . J 5 HOH B 72 472 42 HOH HOH . J 5 HOH B 73 473 70 HOH HOH . J 5 HOH B 74 474 77 HOH HOH . J 5 HOH B 75 475 86 HOH HOH . J 5 HOH B 76 476 11 HOH HOH . J 5 HOH B 77 477 96 HOH HOH . J 5 HOH B 78 478 156 HOH HOH . J 5 HOH B 79 479 110 HOH HOH . J 5 HOH B 80 480 178 HOH HOH . J 5 HOH B 81 481 99 HOH HOH . J 5 HOH B 82 482 78 HOH HOH . J 5 HOH B 83 483 118 HOH HOH . J 5 HOH B 84 484 93 HOH HOH . J 5 HOH B 85 485 114 HOH HOH . J 5 HOH B 86 486 106 HOH HOH . J 5 HOH B 87 487 177 HOH HOH . J 5 HOH B 88 488 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA BKN . . . E 4 2.309 -32.104 9.295 1 34.4 ? CAA BKN 303 A 1 HETATM 2 C CAE BKN . . . E 4 1.758 -30.677 9.294 1 35.1 ? CAE BKN 303 A 1 HETATM 3 O OAI BKN . . . E 4 2.764 -29.881 8.594 1 36.85 ? OAI BKN 303 A 1 HETATM 4 C CAK BKN . . . E 4 2.653 -29.774 7.189 1 36.58 ? CAK BKN 303 A 1 HETATM 5 O OAD BKN . . . E 4 1.71 -30.227 6.54 1 37.87 ? OAD BKN 303 A 1 HETATM 6 C CAH BKN . . . E 4 3.692 -28.917 6.451 1 32.13 ? CAH BKN 303 A 1 HETATM 7 C CAF BKN . . . E 4 2.864 -27.752 5.856 1 32.32 ? CAF BKN 303 A 1 HETATM 8 C CAG BKN . . . E 4 3.793 -26.977 4.791 1 28.41 ? CAG BKN 303 A 1 HETATM 9 C CAJ BKN . . . E 4 2.994 -26.043 3.844 1 30.56 ? CAJ BKN 303 A 1 HETATM 10 O OAC BKN . . . E 4 1.8 -25.787 4.025 1 31.99 ? OAC BKN 303 A 1 HETATM 11 C CAB BKN . . . E 4 3.725 -25.373 2.589 1 31.3 ? CAB BKN 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 556 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 11 #