data_6EP0 # _model_server_result.job_id YZz4yBhmUa_pPvnI0u5u2w _model_server_result.datetime_utc '2024-10-28 02:28:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ep0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6EP0 # _exptl.entry_id 6EP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EP0 _cell.length_a 64.975 _cell.length_b 64.975 _cell.length_c 246.239 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 32 A ASN 32 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc2 A OD2 ASP 63 A ASP 63 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 A OD1 ASP 63 A ASP 63 1_555 H CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc4 A OE1 GLU 122 A GLU 122 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc5 A O GLU 201 A GLU 201 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 A OE2 GLU 201 A GLU 201 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 A OE1 GLU 201 A GLU 201 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc8 C O2P AMP . A AMP 301 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 D CA CA . A CA 302 1_555 M O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc10 D CA CA . A CA 302 1_555 M O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc11 D CA CA . A CA 302 1_555 M O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc12 D CA CA . A CA 302 1_555 N O HOH . B HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc13 E CA CA . A CA 303 1_555 B OE1 GLU 201 B GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 E CA CA . A CA 303 1_555 N O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc15 F CA CA . A CA 304 1_555 M O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc16 F CA CA . A CA 304 1_555 B O GLU 201 B GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc17 F CA CA . A CA 304 1_555 N O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc18 F CA CA . A CA 304 1_555 N O HOH . B HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc19 G CA CA . A CA 305 1_555 M O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc20 G CA CA . A CA 305 5_455 B OD1 ASP 63 B ASP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc21 G CA CA . A CA 305 1_555 N O HOH . B HOH 440 5_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc22 H CA CA . A CA 306 5_455 B OD1 ASP 63 B ASP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc23 H CA CA . A CA 306 5_455 B OD2 ASP 63 B ASP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc24 H CA CA . A CA 306 1_555 N O HOH . B HOH 440 5_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc25 B OE1 GLU 122 B GLU 122 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc26 B OE2 GLU 122 B GLU 122 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc27 J O2P AMP . B AMP 301 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc28 K CA CA . B CA 302 1_555 N O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc29 K CA CA . B CA 302 1_555 N O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc30 K CA CA . B CA 302 1_555 N O HOH . B HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EP0 _atom_sites.fract_transf_matrix[1][1] 0.015391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 301 2 AMP AMP . D 3 CA A 1 302 2 CA CA . E 3 CA A 1 303 3 CA CA . F 3 CA A 1 304 4 CA CA . G 3 CA A 1 305 5 CA CA . H 3 CA A 1 306 6 CA CA . I 4 CL A 1 307 1 CL CL . J 2 AMP B 1 301 1 AMP AMP . K 3 CA B 1 302 1 CA CA . L 4 CL B 1 303 2 CL CL . M 5 HOH A 1 401 133 HOH HOH . M 5 HOH A 2 402 13 HOH HOH . M 5 HOH A 3 403 40 HOH HOH . M 5 HOH A 4 404 33 HOH HOH . M 5 HOH A 5 405 11 HOH HOH . M 5 HOH A 6 406 64 HOH HOH . M 5 HOH A 7 407 18 HOH HOH . M 5 HOH A 8 408 7 HOH HOH . M 5 HOH A 9 409 32 HOH HOH . M 5 HOH A 10 410 29 HOH HOH . M 5 HOH A 11 411 17 HOH HOH . M 5 HOH A 12 412 115 HOH HOH . M 5 HOH A 13 413 47 HOH HOH . M 5 HOH A 14 414 81 HOH HOH . M 5 HOH A 15 415 109 HOH HOH . M 5 HOH A 16 416 36 HOH HOH . M 5 HOH A 17 417 52 HOH HOH . M 5 HOH A 18 418 124 HOH HOH . M 5 HOH A 19 419 88 HOH HOH . M 5 HOH A 20 420 31 HOH HOH . M 5 HOH A 21 421 44 HOH HOH . M 5 HOH A 22 422 12 HOH HOH . M 5 HOH A 23 423 8 HOH HOH . M 5 HOH A 24 424 16 HOH HOH . M 5 HOH A 25 425 94 HOH HOH . M 5 HOH A 26 426 23 HOH HOH . M 5 HOH A 27 427 14 HOH HOH . M 5 HOH A 28 428 45 HOH HOH . M 5 HOH A 29 429 92 HOH HOH . M 5 HOH A 30 430 10 HOH HOH . M 5 HOH A 31 431 120 HOH HOH . M 5 HOH A 32 432 55 HOH HOH . M 5 HOH A 33 433 22 HOH HOH . M 5 HOH A 34 434 132 HOH HOH . M 5 HOH A 35 435 49 HOH HOH . M 5 HOH A 36 436 58 HOH HOH . M 5 HOH A 37 437 28 HOH HOH . M 5 HOH A 38 438 66 HOH HOH . M 5 HOH A 39 439 99 HOH HOH . M 5 HOH A 40 440 27 HOH HOH . M 5 HOH A 41 441 38 HOH HOH . M 5 HOH A 42 442 19 HOH HOH . M 5 HOH A 43 443 20 HOH HOH . M 5 HOH A 44 444 56 HOH HOH . M 5 HOH A 45 445 83 HOH HOH . M 5 HOH A 46 446 30 HOH HOH . M 5 HOH A 47 447 60 HOH HOH . M 5 HOH A 48 448 108 HOH HOH . M 5 HOH A 49 449 80 HOH HOH . M 5 HOH A 50 450 68 HOH HOH . M 5 HOH A 51 451 130 HOH HOH . M 5 HOH A 52 452 59 HOH HOH . M 5 HOH A 53 453 70 HOH HOH . M 5 HOH A 54 454 107 HOH HOH . M 5 HOH A 55 455 3 HOH HOH . M 5 HOH A 56 456 104 HOH HOH . M 5 HOH A 57 457 91 HOH HOH . M 5 HOH A 58 458 93 HOH HOH . M 5 HOH A 59 459 26 HOH HOH . M 5 HOH A 60 460 131 HOH HOH . M 5 HOH A 61 461 113 HOH HOH . M 5 HOH A 62 462 6 HOH HOH . M 5 HOH A 63 463 125 HOH HOH . M 5 HOH A 64 464 126 HOH HOH . M 5 HOH A 65 465 84 HOH HOH . M 5 HOH A 66 466 51 HOH HOH . M 5 HOH A 67 467 90 HOH HOH . M 5 HOH A 68 468 85 HOH HOH . M 5 HOH A 69 469 102 HOH HOH . M 5 HOH A 70 470 110 HOH HOH . M 5 HOH A 71 471 77 HOH HOH . M 5 HOH A 72 472 105 HOH HOH . M 5 HOH A 73 473 111 HOH HOH . M 5 HOH A 74 474 121 HOH HOH . N 5 HOH B 1 401 71 HOH HOH . N 5 HOH B 2 402 116 HOH HOH . N 5 HOH B 3 403 2 HOH HOH . N 5 HOH B 4 404 34 HOH HOH . N 5 HOH B 5 405 9 HOH HOH . N 5 HOH B 6 406 96 HOH HOH . N 5 HOH B 7 407 24 HOH HOH . N 5 HOH B 8 408 37 HOH HOH . N 5 HOH B 9 409 61 HOH HOH . N 5 HOH B 10 410 69 HOH HOH . N 5 HOH B 11 411 122 HOH HOH . N 5 HOH B 12 412 63 HOH HOH . N 5 HOH B 13 413 46 HOH HOH . N 5 HOH B 14 414 41 HOH HOH . N 5 HOH B 15 415 118 HOH HOH . N 5 HOH B 16 416 114 HOH HOH . N 5 HOH B 17 417 39 HOH HOH . N 5 HOH B 18 418 74 HOH HOH . N 5 HOH B 19 419 53 HOH HOH . N 5 HOH B 20 420 21 HOH HOH . N 5 HOH B 21 421 65 HOH HOH . N 5 HOH B 22 422 100 HOH HOH . N 5 HOH B 23 423 76 HOH HOH . N 5 HOH B 24 424 50 HOH HOH . N 5 HOH B 25 425 67 HOH HOH . N 5 HOH B 26 426 48 HOH HOH . N 5 HOH B 27 427 87 HOH HOH . N 5 HOH B 28 428 98 HOH HOH . N 5 HOH B 29 429 103 HOH HOH . N 5 HOH B 30 430 72 HOH HOH . N 5 HOH B 31 431 5 HOH HOH . N 5 HOH B 32 432 95 HOH HOH . N 5 HOH B 33 433 75 HOH HOH . N 5 HOH B 34 434 54 HOH HOH . N 5 HOH B 35 435 43 HOH HOH . N 5 HOH B 36 436 101 HOH HOH . N 5 HOH B 37 437 79 HOH HOH . N 5 HOH B 38 438 35 HOH HOH . N 5 HOH B 39 439 128 HOH HOH . N 5 HOH B 40 440 25 HOH HOH . N 5 HOH B 41 441 78 HOH HOH . N 5 HOH B 42 442 129 HOH HOH . N 5 HOH B 43 443 57 HOH HOH . N 5 HOH B 44 444 119 HOH HOH . N 5 HOH B 45 445 42 HOH HOH . N 5 HOH B 46 446 127 HOH HOH . N 5 HOH B 47 447 123 HOH HOH . N 5 HOH B 48 448 89 HOH HOH . N 5 HOH B 49 449 1 HOH HOH . N 5 HOH B 50 450 73 HOH HOH . N 5 HOH B 51 451 15 HOH HOH . N 5 HOH B 52 452 62 HOH HOH . N 5 HOH B 53 453 82 HOH HOH . N 5 HOH B 54 454 117 HOH HOH . N 5 HOH B 55 455 112 HOH HOH . N 5 HOH B 56 456 106 HOH HOH . N 5 HOH B 57 457 97 HOH HOH . N 5 HOH B 58 458 4 HOH HOH . N 5 HOH B 59 459 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.95 _atom_site.Cartn_y 32.95 _atom_site.Cartn_z 32.526 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.9 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #