data_6EPL # _model_server_result.job_id vyCSfoLID-5VqcqfF2ZW8Q _model_server_result.datetime_utc '2024-10-15 04:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6epl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6EPL # _exptl.entry_id 6EPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EPL _cell.length_a 149.522 _cell.length_b 149.522 _cell.length_c 202.101 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6EPL _atom_sites.fract_transf_matrix[1][1] 0.006688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL R 1 201 1 GOL GOL . D 4 HOH R 1 301 74 HOH HOH . D 4 HOH R 2 302 108 HOH HOH . D 4 HOH R 3 303 95 HOH HOH . D 4 HOH R 4 304 104 HOH HOH . D 4 HOH R 5 305 89 HOH HOH . D 4 HOH R 6 306 46 HOH HOH . D 4 HOH R 7 307 125 HOH HOH . D 4 HOH R 8 308 40 HOH HOH . D 4 HOH R 9 309 134 HOH HOH . D 4 HOH R 10 310 225 HOH HOH . D 4 HOH R 11 311 116 HOH HOH . D 4 HOH R 12 312 67 HOH HOH . D 4 HOH R 13 313 50 HOH HOH . D 4 HOH R 14 314 14 HOH HOH . D 4 HOH R 15 315 114 HOH HOH . D 4 HOH R 16 316 65 HOH HOH . D 4 HOH R 17 317 180 HOH HOH . D 4 HOH R 18 318 132 HOH HOH . D 4 HOH R 19 319 235 HOH HOH . D 4 HOH R 20 320 83 HOH HOH . D 4 HOH R 21 321 183 HOH HOH . D 4 HOH R 22 322 28 HOH HOH . D 4 HOH R 23 323 218 HOH HOH . D 4 HOH R 24 324 140 HOH HOH . D 4 HOH R 25 325 164 HOH HOH . D 4 HOH R 26 326 79 HOH HOH . D 4 HOH R 27 327 230 HOH HOH . D 4 HOH R 28 328 58 HOH HOH . D 4 HOH R 29 329 59 HOH HOH . D 4 HOH R 30 330 175 HOH HOH . D 4 HOH R 31 331 161 HOH HOH . D 4 HOH R 32 332 35 HOH HOH . D 4 HOH R 33 333 177 HOH HOH . D 4 HOH R 34 334 17 HOH HOH . D 4 HOH R 35 335 33 HOH HOH . D 4 HOH R 36 336 152 HOH HOH . D 4 HOH R 37 337 92 HOH HOH . D 4 HOH R 38 338 260 HOH HOH . D 4 HOH R 39 339 128 HOH HOH . D 4 HOH R 40 340 102 HOH HOH . D 4 HOH R 41 341 208 HOH HOH . D 4 HOH R 42 342 77 HOH HOH . D 4 HOH R 43 343 142 HOH HOH . D 4 HOH R 44 344 155 HOH HOH . D 4 HOH R 45 345 51 HOH HOH . D 4 HOH R 46 346 68 HOH HOH . D 4 HOH R 47 347 143 HOH HOH . D 4 HOH R 48 348 1 HOH HOH . D 4 HOH R 49 349 81 HOH HOH . D 4 HOH R 50 350 48 HOH HOH . D 4 HOH R 51 351 60 HOH HOH . D 4 HOH R 52 352 244 HOH HOH . D 4 HOH R 53 353 136 HOH HOH . D 4 HOH R 54 354 26 HOH HOH . D 4 HOH R 55 355 115 HOH HOH . D 4 HOH R 56 356 190 HOH HOH . D 4 HOH R 57 357 18 HOH HOH . D 4 HOH R 58 358 172 HOH HOH . D 4 HOH R 59 359 6 HOH HOH . D 4 HOH R 60 360 111 HOH HOH . D 4 HOH R 61 361 70 HOH HOH . D 4 HOH R 62 362 185 HOH HOH . D 4 HOH R 63 363 251 HOH HOH . D 4 HOH R 64 364 170 HOH HOH . D 4 HOH R 65 365 212 HOH HOH . D 4 HOH R 66 366 226 HOH HOH . D 4 HOH R 67 367 127 HOH HOH . D 4 HOH R 68 368 148 HOH HOH . D 4 HOH R 69 369 254 HOH HOH . D 4 HOH R 70 370 266 HOH HOH . D 4 HOH R 71 371 223 HOH HOH . D 4 HOH R 72 372 53 HOH HOH . D 4 HOH R 73 373 113 HOH HOH . D 4 HOH R 74 374 21 HOH HOH . D 4 HOH R 75 375 219 HOH HOH . D 4 HOH R 76 376 241 HOH HOH . D 4 HOH R 77 377 71 HOH HOH . D 4 HOH R 78 378 141 HOH HOH . D 4 HOH R 79 379 236 HOH HOH . D 4 HOH R 80 380 196 HOH HOH . D 4 HOH R 81 381 242 HOH HOH . D 4 HOH R 82 382 109 HOH HOH . D 4 HOH R 83 383 238 HOH HOH . E 4 HOH S 1 1101 119 HOH HOH . E 4 HOH S 2 1102 75 HOH HOH . E 4 HOH S 3 1103 163 HOH HOH . E 4 HOH S 4 1104 24 HOH HOH . E 4 HOH S 5 1105 105 HOH HOH . E 4 HOH S 6 1106 78 HOH HOH . E 4 HOH S 7 1107 117 HOH HOH . E 4 HOH S 8 1108 2 HOH HOH . E 4 HOH S 9 1109 157 HOH HOH . E 4 HOH S 10 1110 19 HOH HOH . E 4 HOH S 11 1111 107 HOH HOH . E 4 HOH S 12 1112 222 HOH HOH . E 4 HOH S 13 1113 154 HOH HOH . E 4 HOH S 14 1114 124 HOH HOH . E 4 HOH S 15 1115 100 HOH HOH . E 4 HOH S 16 1116 80 HOH HOH . E 4 HOH S 17 1117 36 HOH HOH . E 4 HOH S 18 1118 49 HOH HOH . E 4 HOH S 19 1119 168 HOH HOH . E 4 HOH S 20 1120 186 HOH HOH . E 4 HOH S 21 1121 39 HOH HOH . E 4 HOH S 22 1122 54 HOH HOH . E 4 HOH S 23 1123 248 HOH HOH . E 4 HOH S 24 1124 10 HOH HOH . E 4 HOH S 25 1125 189 HOH HOH . E 4 HOH S 26 1126 153 HOH HOH . E 4 HOH S 27 1127 139 HOH HOH . E 4 HOH S 28 1128 174 HOH HOH . E 4 HOH S 29 1129 84 HOH HOH . E 4 HOH S 30 1130 32 HOH HOH . E 4 HOH S 31 1131 123 HOH HOH . E 4 HOH S 32 1132 181 HOH HOH . E 4 HOH S 33 1133 112 HOH HOH . E 4 HOH S 34 1134 52 HOH HOH . E 4 HOH S 35 1135 252 HOH HOH . E 4 HOH S 36 1136 45 HOH HOH . E 4 HOH S 37 1137 42 HOH HOH . E 4 HOH S 38 1138 234 HOH HOH . E 4 HOH S 39 1139 93 HOH HOH . E 4 HOH S 40 1140 15 HOH HOH . E 4 HOH S 41 1141 85 HOH HOH . E 4 HOH S 42 1142 133 HOH HOH . E 4 HOH S 43 1143 135 HOH HOH . E 4 HOH S 44 1144 90 HOH HOH . E 4 HOH S 45 1145 86 HOH HOH . E 4 HOH S 46 1146 243 HOH HOH . E 4 HOH S 47 1147 250 HOH HOH . E 4 HOH S 48 1148 101 HOH HOH . E 4 HOH S 49 1149 162 HOH HOH . E 4 HOH S 50 1150 76 HOH HOH . E 4 HOH S 51 1151 25 HOH HOH . E 4 HOH S 52 1152 61 HOH HOH . E 4 HOH S 53 1153 200 HOH HOH . E 4 HOH S 54 1154 158 HOH HOH . E 4 HOH S 55 1155 4 HOH HOH . E 4 HOH S 56 1156 57 HOH HOH . E 4 HOH S 57 1157 41 HOH HOH . E 4 HOH S 58 1158 145 HOH HOH . E 4 HOH S 59 1159 8 HOH HOH . E 4 HOH S 60 1160 122 HOH HOH . E 4 HOH S 61 1161 201 HOH HOH . E 4 HOH S 62 1162 16 HOH HOH . E 4 HOH S 63 1163 99 HOH HOH . E 4 HOH S 64 1164 118 HOH HOH . E 4 HOH S 65 1165 137 HOH HOH . E 4 HOH S 66 1166 97 HOH HOH . E 4 HOH S 67 1167 178 HOH HOH . E 4 HOH S 68 1168 3 HOH HOH . E 4 HOH S 69 1169 150 HOH HOH . E 4 HOH S 70 1170 44 HOH HOH . E 4 HOH S 71 1171 37 HOH HOH . E 4 HOH S 72 1172 267 HOH HOH . E 4 HOH S 73 1173 20 HOH HOH . E 4 HOH S 74 1174 146 HOH HOH . E 4 HOH S 75 1175 55 HOH HOH . E 4 HOH S 76 1176 96 HOH HOH . E 4 HOH S 77 1177 106 HOH HOH . E 4 HOH S 78 1178 213 HOH HOH . E 4 HOH S 79 1179 131 HOH HOH . E 4 HOH S 80 1180 121 HOH HOH . E 4 HOH S 81 1181 94 HOH HOH . E 4 HOH S 82 1182 29 HOH HOH . E 4 HOH S 83 1183 7 HOH HOH . E 4 HOH S 84 1184 165 HOH HOH . E 4 HOH S 85 1185 12 HOH HOH . E 4 HOH S 86 1186 82 HOH HOH . E 4 HOH S 87 1187 192 HOH HOH . E 4 HOH S 88 1188 144 HOH HOH . E 4 HOH S 89 1189 179 HOH HOH . E 4 HOH S 90 1190 187 HOH HOH . E 4 HOH S 91 1191 23 HOH HOH . E 4 HOH S 92 1192 224 HOH HOH . E 4 HOH S 93 1193 220 HOH HOH . E 4 HOH S 94 1194 63 HOH HOH . E 4 HOH S 95 1195 249 HOH HOH . E 4 HOH S 96 1196 228 HOH HOH . E 4 HOH S 97 1197 159 HOH HOH . E 4 HOH S 98 1198 262 HOH HOH . E 4 HOH S 99 1199 202 HOH HOH . E 4 HOH S 100 1200 203 HOH HOH . E 4 HOH S 101 1201 13 HOH HOH . E 4 HOH S 102 1202 34 HOH HOH . E 4 HOH S 103 1203 88 HOH HOH . E 4 HOH S 104 1204 264 HOH HOH . E 4 HOH S 105 1205 171 HOH HOH . E 4 HOH S 106 1206 176 HOH HOH . E 4 HOH S 107 1207 215 HOH HOH . E 4 HOH S 108 1208 38 HOH HOH . E 4 HOH S 109 1209 5 HOH HOH . E 4 HOH S 110 1210 173 HOH HOH . E 4 HOH S 111 1211 47 HOH HOH . E 4 HOH S 112 1212 194 HOH HOH . E 4 HOH S 113 1213 221 HOH HOH . E 4 HOH S 114 1214 147 HOH HOH . E 4 HOH S 115 1215 64 HOH HOH . E 4 HOH S 116 1216 22 HOH HOH . E 4 HOH S 117 1217 130 HOH HOH . E 4 HOH S 118 1218 188 HOH HOH . E 4 HOH S 119 1219 87 HOH HOH . E 4 HOH S 120 1220 205 HOH HOH . E 4 HOH S 121 1221 258 HOH HOH . E 4 HOH S 122 1222 126 HOH HOH . E 4 HOH S 123 1223 255 HOH HOH . E 4 HOH S 124 1224 227 HOH HOH . E 4 HOH S 125 1225 217 HOH HOH . E 4 HOH S 126 1226 182 HOH HOH . E 4 HOH S 127 1227 91 HOH HOH . E 4 HOH S 128 1228 43 HOH HOH . E 4 HOH S 129 1229 30 HOH HOH . E 4 HOH S 130 1230 253 HOH HOH . E 4 HOH S 131 1231 73 HOH HOH . E 4 HOH S 132 1232 120 HOH HOH . E 4 HOH S 133 1233 11 HOH HOH . E 4 HOH S 134 1234 31 HOH HOH . E 4 HOH S 135 1235 110 HOH HOH . E 4 HOH S 136 1236 56 HOH HOH . E 4 HOH S 137 1237 198 HOH HOH . E 4 HOH S 138 1238 214 HOH HOH . E 4 HOH S 139 1239 233 HOH HOH . E 4 HOH S 140 1240 149 HOH HOH . E 4 HOH S 141 1241 206 HOH HOH . E 4 HOH S 142 1242 257 HOH HOH . E 4 HOH S 143 1243 197 HOH HOH . E 4 HOH S 144 1244 9 HOH HOH . E 4 HOH S 145 1245 259 HOH HOH . E 4 HOH S 146 1246 191 HOH HOH . E 4 HOH S 147 1247 169 HOH HOH . E 4 HOH S 148 1248 210 HOH HOH . E 4 HOH S 149 1249 245 HOH HOH . E 4 HOH S 150 1250 199 HOH HOH . E 4 HOH S 151 1251 240 HOH HOH . E 4 HOH S 152 1252 204 HOH HOH . E 4 HOH S 153 1253 247 HOH HOH . E 4 HOH S 154 1254 184 HOH HOH . E 4 HOH S 155 1255 166 HOH HOH . E 4 HOH S 156 1256 229 HOH HOH . E 4 HOH S 157 1257 211 HOH HOH . E 4 HOH S 158 1258 193 HOH HOH . E 4 HOH S 159 1259 69 HOH HOH . E 4 HOH S 160 1260 216 HOH HOH . E 4 HOH S 161 1261 129 HOH HOH . E 4 HOH S 162 1262 72 HOH HOH . E 4 HOH S 163 1263 156 HOH HOH . E 4 HOH S 164 1264 27 HOH HOH . E 4 HOH S 165 1265 207 HOH HOH . E 4 HOH S 166 1266 151 HOH HOH . E 4 HOH S 167 1267 256 HOH HOH . E 4 HOH S 168 1268 138 HOH HOH . E 4 HOH S 169 1269 160 HOH HOH . E 4 HOH S 170 1270 232 HOH HOH . E 4 HOH S 171 1271 261 HOH HOH . E 4 HOH S 172 1272 209 HOH HOH . E 4 HOH S 173 1273 231 HOH HOH . E 4 HOH S 174 1274 246 HOH HOH . E 4 HOH S 175 1275 237 HOH HOH . E 4 HOH S 176 1276 98 HOH HOH . E 4 HOH S 177 1277 103 HOH HOH . E 4 HOH S 178 1278 265 HOH HOH . E 4 HOH S 179 1279 195 HOH HOH . E 4 HOH S 180 1280 62 HOH HOH . E 4 HOH S 181 1281 239 HOH HOH . E 4 HOH S 182 1282 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 183.671 117.893 246.842 1 95.59 ? C1 GOL 201 R 1 HETATM 2 O O1 GOL . . . C 3 183.036 117.093 245.839 1 86.54 ? O1 GOL 201 R 1 HETATM 3 C C2 GOL . . . C 3 182.685 118.926 247.384 1 98.16 ? C2 GOL 201 R 1 HETATM 4 O O2 GOL . . . C 3 181.972 118.367 248.496 1 93.14 ? O2 GOL 201 R 1 HETATM 5 C C3 GOL . . . C 3 183.437 120.182 247.817 1 97.74 ? C3 GOL 201 R 1 HETATM 6 O O3 GOL . . . C 3 182.577 121.056 248.56 1 91.98 ? O3 GOL 201 R 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 555 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #