data_6EPM
#
_model_server_result.job_id            LCBX42MpU0egy0jOUi4Q9Q 
_model_server_result.datetime_utc      '2024-11-24 13:24:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6epm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1101}' 
#
_entry.id    6EPM 
#
_exptl.entry_id    6EPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              213.278 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1-phenyl-5,6-dihydro-4~{H}-cyclopenta[c]pyrazol-3-yl)methanamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6EPM 
_cell.length_a            150.223 
_cell.length_b            150.223 
_cell.length_c            200.471 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H15 N3' 
_chem_comp.formula_weight    213.278 
_chem_comp.id                BQ5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1-phenyl-5,6-dihydro-4~{H}-cyclopenta[c]pyrazol-3-yl)methanamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C15 BQ5 doub 70 n y 
C16 C14 BQ5 sing 71 n y 
C15 C12 BQ5 sing 72 n y 
C14 C13 BQ5 doub 73 n y 
C12 C6 BQ5 doub 74 n y 
C13 C6 BQ5 sing 75 n y 
C6 N1 BQ5 sing 76 n n 
N1 N2 BQ5 sing 77 n y 
N1 C3 BQ5 sing 78 n y 
C8 C3 BQ5 sing 79 n n 
C8 C11 BQ5 sing 80 n n 
N2 C5 BQ5 doub 81 n y 
C3 C4 BQ5 doub 82 n y 
C5 C4 BQ5 sing 83 n y 
C5 C9 BQ5 sing 84 n n 
C4 C7 BQ5 sing 85 n n 
C11 C7 BQ5 sing 86 n n 
N10 C9 BQ5 sing 87 n n 
C7 H1 BQ5 sing 88 n n 
C7 H2 BQ5 sing 89 n n 
C8 H3 BQ5 sing 90 n n 
C8 H4 BQ5 sing 91 n n 
C13 H5 BQ5 sing 92 n n 
C15 H6 BQ5 sing 93 n n 
C12 H7 BQ5 sing 94 n n 
C16 H8 BQ5 sing 95 n n 
C14 H9 BQ5 sing 96 n n 
C11 H10 BQ5 sing 97 n n 
C11 H11 BQ5 sing 98 n n 
C9 H12 BQ5 sing 99 n n 
C9 H13 BQ5 sing 100 n n 
N10 H14 BQ5 sing 101 n n 
N10 H15 BQ5 sing 102 n n 
#
_atom_sites.entry_id                     6EPM 
_atom_sites.fract_transf_matrix[1][1]    0.006657 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006657 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL R 1 201 201 GOL GOL . 
D 4 BQ5 S 1 1101 1 BQ5 LIG . 
E 5 HOH R 1 301 40 HOH HOH . 
E 5 HOH R 2 302 127 HOH HOH . 
E 5 HOH R 3 303 59 HOH HOH . 
E 5 HOH R 4 304 176 HOH HOH . 
E 5 HOH R 5 305 149 HOH HOH . 
E 5 HOH R 6 306 195 HOH HOH . 
E 5 HOH R 7 307 61 HOH HOH . 
E 5 HOH R 8 308 129 HOH HOH . 
E 5 HOH R 9 309 71 HOH HOH . 
E 5 HOH R 10 310 131 HOH HOH . 
E 5 HOH R 11 311 45 HOH HOH . 
E 5 HOH R 12 312 54 HOH HOH . 
E 5 HOH R 13 313 151 HOH HOH . 
E 5 HOH R 14 314 180 HOH HOH . 
E 5 HOH R 15 315 79 HOH HOH . 
E 5 HOH R 16 316 107 HOH HOH . 
E 5 HOH R 17 317 74 HOH HOH . 
E 5 HOH R 18 318 198 HOH HOH . 
E 5 HOH R 19 319 147 HOH HOH . 
E 5 HOH R 20 320 25 HOH HOH . 
E 5 HOH R 21 321 31 HOH HOH . 
E 5 HOH R 22 322 73 HOH HOH . 
E 5 HOH R 23 323 93 HOH HOH . 
E 5 HOH R 24 324 32 HOH HOH . 
E 5 HOH R 25 325 201 HOH HOH . 
E 5 HOH R 26 326 57 HOH HOH . 
E 5 HOH R 27 327 187 HOH HOH . 
E 5 HOH R 28 328 184 HOH HOH . 
E 5 HOH R 29 329 96 HOH HOH . 
E 5 HOH R 30 330 50 HOH HOH . 
E 5 HOH R 31 331 220 HOH HOH . 
E 5 HOH R 32 332 55 HOH HOH . 
E 5 HOH R 33 333 143 HOH HOH . 
E 5 HOH R 34 334 165 HOH HOH . 
E 5 HOH R 35 335 203 HOH HOH . 
E 5 HOH R 36 336 157 HOH HOH . 
E 5 HOH R 37 337 188 HOH HOH . 
E 5 HOH R 38 338 164 HOH HOH . 
E 5 HOH R 39 339 109 HOH HOH . 
E 5 HOH R 40 340 10 HOH HOH . 
E 5 HOH R 41 341 206 HOH HOH . 
E 5 HOH R 42 342 18 HOH HOH . 
E 5 HOH R 43 343 208 HOH HOH . 
E 5 HOH R 44 344 86 HOH HOH . 
E 5 HOH R 45 345 221 HOH HOH . 
E 5 HOH R 46 346 219 HOH HOH . 
E 5 HOH R 47 347 194 HOH HOH . 
E 5 HOH R 48 348 56 HOH HOH . 
E 5 HOH R 49 349 92 HOH HOH . 
E 5 HOH R 50 350 204 HOH HOH . 
E 5 HOH R 51 351 224 HOH HOH . 
E 5 HOH R 52 352 182 HOH HOH . 
E 5 HOH R 53 353 191 HOH HOH . 
E 5 HOH R 54 354 209 HOH HOH . 
F 5 HOH S 1 1201 216 HOH HOH . 
F 5 HOH S 2 1202 161 HOH HOH . 
F 5 HOH S 3 1203 133 HOH HOH . 
F 5 HOH S 4 1204 230 HOH HOH . 
F 5 HOH S 5 1205 5 HOH HOH . 
F 5 HOH S 6 1206 47 HOH HOH . 
F 5 HOH S 7 1207 35 HOH HOH . 
F 5 HOH S 8 1208 146 HOH HOH . 
F 5 HOH S 9 1209 189 HOH HOH . 
F 5 HOH S 10 1210 162 HOH HOH . 
F 5 HOH S 11 1211 158 HOH HOH . 
F 5 HOH S 12 1212 76 HOH HOH . 
F 5 HOH S 13 1213 223 HOH HOH . 
F 5 HOH S 14 1214 19 HOH HOH . 
F 5 HOH S 15 1215 12 HOH HOH . 
F 5 HOH S 16 1216 30 HOH HOH . 
F 5 HOH S 17 1217 132 HOH HOH . 
F 5 HOH S 18 1218 125 HOH HOH . 
F 5 HOH S 19 1219 177 HOH HOH . 
F 5 HOH S 20 1220 101 HOH HOH . 
F 5 HOH S 21 1221 69 HOH HOH . 
F 5 HOH S 22 1222 1 HOH HOH . 
F 5 HOH S 23 1223 7 HOH HOH . 
F 5 HOH S 24 1224 62 HOH HOH . 
F 5 HOH S 25 1225 21 HOH HOH . 
F 5 HOH S 26 1226 113 HOH HOH . 
F 5 HOH S 27 1227 102 HOH HOH . 
F 5 HOH S 28 1228 104 HOH HOH . 
F 5 HOH S 29 1229 15 HOH HOH . 
F 5 HOH S 30 1230 179 HOH HOH . 
F 5 HOH S 31 1231 63 HOH HOH . 
F 5 HOH S 32 1232 124 HOH HOH . 
F 5 HOH S 33 1233 78 HOH HOH . 
F 5 HOH S 34 1234 120 HOH HOH . 
F 5 HOH S 35 1235 70 HOH HOH . 
F 5 HOH S 36 1236 58 HOH HOH . 
F 5 HOH S 37 1237 169 HOH HOH . 
F 5 HOH S 38 1238 3 HOH HOH . 
F 5 HOH S 39 1239 181 HOH HOH . 
F 5 HOH S 40 1240 23 HOH HOH . 
F 5 HOH S 41 1241 36 HOH HOH . 
F 5 HOH S 42 1242 66 HOH HOH . 
F 5 HOH S 43 1243 20 HOH HOH . 
F 5 HOH S 44 1244 145 HOH HOH . 
F 5 HOH S 45 1245 163 HOH HOH . 
F 5 HOH S 46 1246 88 HOH HOH . 
F 5 HOH S 47 1247 65 HOH HOH . 
F 5 HOH S 48 1248 4 HOH HOH . 
F 5 HOH S 49 1249 44 HOH HOH . 
F 5 HOH S 50 1250 119 HOH HOH . 
F 5 HOH S 51 1251 172 HOH HOH . 
F 5 HOH S 52 1252 140 HOH HOH . 
F 5 HOH S 53 1253 8 HOH HOH . 
F 5 HOH S 54 1254 39 HOH HOH . 
F 5 HOH S 55 1255 202 HOH HOH . 
F 5 HOH S 56 1256 130 HOH HOH . 
F 5 HOH S 57 1257 139 HOH HOH . 
F 5 HOH S 58 1258 13 HOH HOH . 
F 5 HOH S 59 1259 82 HOH HOH . 
F 5 HOH S 60 1260 75 HOH HOH . 
F 5 HOH S 61 1261 49 HOH HOH . 
F 5 HOH S 62 1262 68 HOH HOH . 
F 5 HOH S 63 1263 2 HOH HOH . 
F 5 HOH S 64 1264 137 HOH HOH . 
F 5 HOH S 65 1265 121 HOH HOH . 
F 5 HOH S 66 1266 135 HOH HOH . 
F 5 HOH S 67 1267 196 HOH HOH . 
F 5 HOH S 68 1268 43 HOH HOH . 
F 5 HOH S 69 1269 192 HOH HOH . 
F 5 HOH S 70 1270 64 HOH HOH . 
F 5 HOH S 71 1271 27 HOH HOH . 
F 5 HOH S 72 1272 200 HOH HOH . 
F 5 HOH S 73 1273 90 HOH HOH . 
F 5 HOH S 74 1274 41 HOH HOH . 
F 5 HOH S 75 1275 22 HOH HOH . 
F 5 HOH S 76 1276 226 HOH HOH . 
F 5 HOH S 77 1277 112 HOH HOH . 
F 5 HOH S 78 1278 225 HOH HOH . 
F 5 HOH S 79 1279 97 HOH HOH . 
F 5 HOH S 80 1280 100 HOH HOH . 
F 5 HOH S 81 1281 153 HOH HOH . 
F 5 HOH S 82 1282 222 HOH HOH . 
F 5 HOH S 83 1283 197 HOH HOH . 
F 5 HOH S 84 1284 24 HOH HOH . 
F 5 HOH S 85 1285 126 HOH HOH . 
F 5 HOH S 86 1286 178 HOH HOH . 
F 5 HOH S 87 1287 52 HOH HOH . 
F 5 HOH S 88 1288 103 HOH HOH . 
F 5 HOH S 89 1289 11 HOH HOH . 
F 5 HOH S 90 1290 138 HOH HOH . 
F 5 HOH S 91 1291 167 HOH HOH . 
F 5 HOH S 92 1292 84 HOH HOH . 
F 5 HOH S 93 1293 77 HOH HOH . 
F 5 HOH S 94 1294 34 HOH HOH . 
F 5 HOH S 95 1295 81 HOH HOH . 
F 5 HOH S 96 1296 136 HOH HOH . 
F 5 HOH S 97 1297 215 HOH HOH . 
F 5 HOH S 98 1298 193 HOH HOH . 
F 5 HOH S 99 1299 48 HOH HOH . 
F 5 HOH S 100 1300 148 HOH HOH . 
F 5 HOH S 101 1301 14 HOH HOH . 
F 5 HOH S 102 1302 46 HOH HOH . 
F 5 HOH S 103 1303 38 HOH HOH . 
F 5 HOH S 104 1304 128 HOH HOH . 
F 5 HOH S 105 1305 60 HOH HOH . 
F 5 HOH S 106 1306 210 HOH HOH . 
F 5 HOH S 107 1307 115 HOH HOH . 
F 5 HOH S 108 1308 98 HOH HOH . 
F 5 HOH S 109 1309 72 HOH HOH . 
F 5 HOH S 110 1310 16 HOH HOH . 
F 5 HOH S 111 1311 53 HOH HOH . 
F 5 HOH S 112 1312 212 HOH HOH . 
F 5 HOH S 113 1313 42 HOH HOH . 
F 5 HOH S 114 1314 186 HOH HOH . 
F 5 HOH S 115 1315 218 HOH HOH . 
F 5 HOH S 116 1316 199 HOH HOH . 
F 5 HOH S 117 1317 9 HOH HOH . 
F 5 HOH S 118 1318 67 HOH HOH . 
F 5 HOH S 119 1319 29 HOH HOH . 
F 5 HOH S 120 1320 110 HOH HOH . 
F 5 HOH S 121 1321 170 HOH HOH . 
F 5 HOH S 122 1322 123 HOH HOH . 
F 5 HOH S 123 1323 217 HOH HOH . 
F 5 HOH S 124 1324 51 HOH HOH . 
F 5 HOH S 125 1325 108 HOH HOH . 
F 5 HOH S 126 1326 114 HOH HOH . 
F 5 HOH S 127 1327 144 HOH HOH . 
F 5 HOH S 128 1328 154 HOH HOH . 
F 5 HOH S 129 1329 91 HOH HOH . 
F 5 HOH S 130 1330 106 HOH HOH . 
F 5 HOH S 131 1331 80 HOH HOH . 
F 5 HOH S 132 1332 190 HOH HOH . 
F 5 HOH S 133 1333 26 HOH HOH . 
F 5 HOH S 134 1334 28 HOH HOH . 
F 5 HOH S 135 1335 117 HOH HOH . 
F 5 HOH S 136 1336 33 HOH HOH . 
F 5 HOH S 137 1337 150 HOH HOH . 
F 5 HOH S 138 1338 87 HOH HOH . 
F 5 HOH S 139 1339 166 HOH HOH . 
F 5 HOH S 140 1340 214 HOH HOH . 
F 5 HOH S 141 1341 183 HOH HOH . 
F 5 HOH S 142 1342 134 HOH HOH . 
F 5 HOH S 143 1343 6 HOH HOH . 
F 5 HOH S 144 1344 156 HOH HOH . 
F 5 HOH S 145 1345 122 HOH HOH . 
F 5 HOH S 146 1346 83 HOH HOH . 
F 5 HOH S 147 1347 205 HOH HOH . 
F 5 HOH S 148 1348 141 HOH HOH . 
F 5 HOH S 149 1349 116 HOH HOH . 
F 5 HOH S 150 1350 105 HOH HOH . 
F 5 HOH S 151 1351 211 HOH HOH . 
F 5 HOH S 152 1352 85 HOH HOH . 
F 5 HOH S 153 1353 142 HOH HOH . 
F 5 HOH S 154 1354 17 HOH HOH . 
F 5 HOH S 155 1355 213 HOH HOH . 
F 5 HOH S 156 1356 118 HOH HOH . 
F 5 HOH S 157 1357 185 HOH HOH . 
F 5 HOH S 158 1358 99 HOH HOH . 
F 5 HOH S 159 1359 175 HOH HOH . 
F 5 HOH S 160 1360 228 HOH HOH . 
F 5 HOH S 161 1361 94 HOH HOH . 
F 5 HOH S 162 1362 37 HOH HOH . 
F 5 HOH S 163 1363 171 HOH HOH . 
F 5 HOH S 164 1364 155 HOH HOH . 
F 5 HOH S 165 1365 168 HOH HOH . 
F 5 HOH S 166 1366 95 HOH HOH . 
F 5 HOH S 167 1367 227 HOH HOH . 
F 5 HOH S 168 1368 152 HOH HOH . 
F 5 HOH S 169 1369 89 HOH HOH . 
F 5 HOH S 170 1370 111 HOH HOH . 
F 5 HOH S 171 1371 173 HOH HOH . 
F 5 HOH S 172 1372 229 HOH HOH . 
F 5 HOH S 173 1373 160 HOH HOH . 
F 5 HOH S 174 1374 159 HOH HOH . 
F 5 HOH S 175 1375 207 HOH HOH . 
F 5 HOH S 176 1376 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 BQ5 . . . D 4 183.764 120.842 278.956 1 56.54 ? N1 BQ5 1101 S 1 
HETATM 2 C C4 BQ5 . . . D 4 182.842 120.953 280.923 1 49.14 ? C4 BQ5 1101 S 1 
HETATM 3 C C5 BQ5 . . . D 4 184.037 121.653 280.885 1 50.68 ? C5 BQ5 1101 S 1 
HETATM 4 C C6 BQ5 . . . D 4 183.986 120.545 277.654 1 58.45 ? C6 BQ5 1101 S 1 
HETATM 5 C C7 BQ5 . . . D 4 181.655 120.529 281.803 1 47.55 ? C7 BQ5 1101 S 1 
HETATM 6 C C8 BQ5 . . . D 4 181.387 119.63 279.596 1 58.28 ? C8 BQ5 1101 S 1 
HETATM 7 C C13 BQ5 . . . D 4 185.246 120.1 277.224 1 50.26 ? C13 BQ5 1101 S 1 
HETATM 8 C C15 BQ5 . . . D 4 183.196 120.386 275.351 1 51.53 ? C15 BQ5 1101 S 1 
HETATM 9 C C12 BQ5 . . . D 4 182.964 120.682 276.697 1 50.27 ? C12 BQ5 1101 S 1 
HETATM 10 C C16 BQ5 . . . D 4 184.455 119.941 274.939 1 57.22 ? C16 BQ5 1101 S 1 
HETATM 11 C C14 BQ5 . . . D 4 185.479 119.799 275.878 1 53.44 ? C14 BQ5 1101 S 1 
HETATM 12 N N2 BQ5 . . . D 4 184.527 121.534 279.65 1 46.77 ? N2 BQ5 1101 S 1 
HETATM 13 C C3 BQ5 . . . D 4 182.696 120.436 279.651 1 49.1 ? C3 BQ5 1101 S 1 
HETATM 14 C C11 BQ5 . . . D 4 181.04 119.342 281.061 1 48.13 ? C11 BQ5 1101 S 1 
HETATM 15 C C9 BQ5 . . . D 4 184.668 122.419 282.055 1 50.31 ? C9 BQ5 1101 S 1 
HETATM 16 N N10 BQ5 . . . D 4 184.869 123.814 281.683 1 58.07 ? N10 BQ5 1101 S 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#