data_6EQ5 # _model_server_result.job_id MB8OdqVIhXpHmz7Xxo637g _model_server_result.datetime_utc '2024-11-23 03:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6EQ5 # _exptl.entry_id 6EQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EQ5 _cell.length_a 60.804 _cell.length_b 66.467 _cell.length_c 36.242 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 70 n y NAF CAH AX7 sing 71 n y CAI CAD AX7 doub 72 n y CAI CAJ AX7 sing 73 n y CAD CAB AX7 sing 74 n y CAB CAC AX7 doub 75 n y CAC CAE AX7 sing 76 n y CAE CAJ AX7 doub 77 n y CAJ NAG AX7 sing 78 n y NAG CAH AX7 doub 79 n y CAH NAA AX7 sing 80 n n NAF HNAF AX7 sing 81 n n CAD HAD AX7 sing 82 n n CAB HAB AX7 sing 83 n n CAC HAC AX7 sing 84 n n CAE HAE AX7 sing 85 n n NAA HNAA AX7 sing 86 n n NAA HNAB AX7 sing 87 n n # _atom_sites.entry_id 6EQ5 _atom_sites.fract_transf_matrix[1][1] 0.016446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AX7 A 1 201 1 AX7 LIG . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 HOH A 1 301 139 HOH HOH . D 4 HOH A 2 302 129 HOH HOH . D 4 HOH A 3 303 100 HOH HOH . D 4 HOH A 4 304 33 HOH HOH . D 4 HOH A 5 305 17 HOH HOH . D 4 HOH A 6 306 75 HOH HOH . D 4 HOH A 7 307 66 HOH HOH . D 4 HOH A 8 308 19 HOH HOH . D 4 HOH A 9 309 5 HOH HOH . D 4 HOH A 10 310 1 HOH HOH . D 4 HOH A 11 311 29 HOH HOH . D 4 HOH A 12 312 27 HOH HOH . D 4 HOH A 13 313 3 HOH HOH . D 4 HOH A 14 314 76 HOH HOH . D 4 HOH A 15 315 4 HOH HOH . D 4 HOH A 16 316 22 HOH HOH . D 4 HOH A 17 317 135 HOH HOH . D 4 HOH A 18 318 132 HOH HOH . D 4 HOH A 19 319 39 HOH HOH . D 4 HOH A 20 320 60 HOH HOH . D 4 HOH A 21 321 110 HOH HOH . D 4 HOH A 22 322 9 HOH HOH . D 4 HOH A 23 323 50 HOH HOH . D 4 HOH A 24 324 24 HOH HOH . D 4 HOH A 25 325 63 HOH HOH . D 4 HOH A 26 326 38 HOH HOH . D 4 HOH A 27 327 15 HOH HOH . D 4 HOH A 28 328 37 HOH HOH . D 4 HOH A 29 329 45 HOH HOH . D 4 HOH A 30 330 10 HOH HOH . D 4 HOH A 31 331 91 HOH HOH . D 4 HOH A 32 332 16 HOH HOH . D 4 HOH A 33 333 47 HOH HOH . D 4 HOH A 34 334 74 HOH HOH . D 4 HOH A 35 335 20 HOH HOH . D 4 HOH A 36 336 8 HOH HOH . D 4 HOH A 37 337 51 HOH HOH . D 4 HOH A 38 338 12 HOH HOH . D 4 HOH A 39 339 40 HOH HOH . D 4 HOH A 40 340 80 HOH HOH . D 4 HOH A 41 341 114 HOH HOH . D 4 HOH A 42 342 43 HOH HOH . D 4 HOH A 43 343 18 HOH HOH . D 4 HOH A 44 344 26 HOH HOH . D 4 HOH A 45 345 61 HOH HOH . D 4 HOH A 46 346 46 HOH HOH . D 4 HOH A 47 347 99 HOH HOH . D 4 HOH A 48 348 25 HOH HOH . D 4 HOH A 49 349 21 HOH HOH . D 4 HOH A 50 350 62 HOH HOH . D 4 HOH A 51 351 34 HOH HOH . D 4 HOH A 52 352 72 HOH HOH . D 4 HOH A 53 353 95 HOH HOH . D 4 HOH A 54 354 131 HOH HOH . D 4 HOH A 55 355 106 HOH HOH . D 4 HOH A 56 356 41 HOH HOH . D 4 HOH A 57 357 13 HOH HOH . D 4 HOH A 58 358 11 HOH HOH . D 4 HOH A 59 359 77 HOH HOH . D 4 HOH A 60 360 113 HOH HOH . D 4 HOH A 61 361 81 HOH HOH . D 4 HOH A 62 362 48 HOH HOH . D 4 HOH A 63 363 52 HOH HOH . D 4 HOH A 64 364 101 HOH HOH . D 4 HOH A 65 365 137 HOH HOH . D 4 HOH A 66 366 30 HOH HOH . D 4 HOH A 67 367 107 HOH HOH . D 4 HOH A 68 368 103 HOH HOH . D 4 HOH A 69 369 140 HOH HOH . D 4 HOH A 70 370 68 HOH HOH . D 4 HOH A 71 371 70 HOH HOH . D 4 HOH A 72 372 90 HOH HOH . D 4 HOH A 73 373 23 HOH HOH . D 4 HOH A 74 374 122 HOH HOH . D 4 HOH A 75 375 92 HOH HOH . D 4 HOH A 76 376 85 HOH HOH . D 4 HOH A 77 377 57 HOH HOH . D 4 HOH A 78 378 88 HOH HOH . D 4 HOH A 79 379 82 HOH HOH . D 4 HOH A 80 380 118 HOH HOH . D 4 HOH A 81 381 56 HOH HOH . D 4 HOH A 82 382 136 HOH HOH . D 4 HOH A 83 383 111 HOH HOH . D 4 HOH A 84 384 53 HOH HOH . D 4 HOH A 85 385 133 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 128 HOH HOH . D 4 HOH A 88 388 105 HOH HOH . D 4 HOH A 89 389 130 HOH HOH . D 4 HOH A 90 390 59 HOH HOH . D 4 HOH A 91 391 69 HOH HOH . D 4 HOH A 92 392 108 HOH HOH . D 4 HOH A 93 393 138 HOH HOH . D 4 HOH A 94 394 96 HOH HOH . D 4 HOH A 95 395 134 HOH HOH . D 4 HOH A 96 396 65 HOH HOH . D 4 HOH A 97 397 94 HOH HOH . D 4 HOH A 98 398 112 HOH HOH . D 4 HOH A 99 399 31 HOH HOH . D 4 HOH A 100 400 120 HOH HOH . D 4 HOH A 101 401 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . B 2 -12.347 11.006 14.178 1 25.84 ? NAF AX7 201 A 1 HETATM 2 C CAI AX7 . . . B 2 -13.338 10.603 15.114 1 29.21 ? CAI AX7 201 A 1 HETATM 3 C CAD AX7 . . . B 2 -13.267 9.72 16.172 1 36.32 ? CAD AX7 201 A 1 HETATM 4 C CAB AX7 . . . B 2 -14.398 9.522 16.928 1 34.58 ? CAB AX7 201 A 1 HETATM 5 C CAC AX7 . . . B 2 -15.597 10.201 16.624 1 37.2 ? CAC AX7 201 A 1 HETATM 6 C CAE AX7 . . . B 2 -15.681 11.087 15.563 1 29.22 ? CAE AX7 201 A 1 HETATM 7 C CAJ AX7 . . . B 2 -14.537 11.307 14.786 1 27.7 ? CAJ AX7 201 A 1 HETATM 8 N NAG AX7 . . . B 2 -14.332 12.154 13.658 1 27.57 ? NAG AX7 201 A 1 HETATM 9 C CAH AX7 . . . B 2 -13.008 11.934 13.333 1 31.45 ? CAH AX7 201 A 1 HETATM 10 N NAA AX7 . . . B 2 -12.308 12.496 12.337 1 23.77 ? NAA AX7 201 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #