data_6EQB # _model_server_result.job_id irprfpWijmmlumLylelfaQ _model_server_result.datetime_utc '2024-11-22 00:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 6EQB # _exptl.entry_id 6EQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EQB _cell.length_a 120.771 _cell.length_b 120.771 _cell.length_c 82.247 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf5 D SG CYS 132 D CYS 132 1_555 D SG CYS 182 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf6 D SG CYS 157 D CYS 157 1_555 E SG CYS 171 E CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf8 E SG CYS 145 E CYS 145 1_555 E SG CYS 210 E CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 92 n n N1 C6 EPE sing 93 n n N1 C9 EPE sing 94 n n C2 C3 EPE sing 95 n n C2 H21 EPE sing 96 n n C2 H22 EPE sing 97 n n C3 N4 EPE sing 98 n n C3 H31 EPE sing 99 n n C3 H32 EPE sing 100 n n N4 C5 EPE sing 101 n n N4 C7 EPE sing 102 n n C5 C6 EPE sing 103 n n C5 H51 EPE sing 104 n n C5 H52 EPE sing 105 n n C6 H61 EPE sing 106 n n C6 H62 EPE sing 107 n n C7 C8 EPE sing 108 n n C7 H71 EPE sing 109 n n C7 H72 EPE sing 110 n n C8 O8 EPE sing 111 n n C8 H81 EPE sing 112 n n C8 H82 EPE sing 113 n n O8 HO8 EPE sing 114 n n C9 C10 EPE sing 115 n n C9 H91 EPE sing 116 n n C9 H92 EPE sing 117 n n C10 S EPE sing 118 n n C10 H101 EPE sing 119 n n C10 H102 EPE sing 120 n n S O1S EPE doub 121 n n S O2S EPE doub 122 n n S O3S EPE sing 123 n n O3S HOS3 EPE sing 124 n n # _atom_sites.entry_id 6EQB _atom_sites.fract_transf_matrix[1][1] 0.00828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EPE A 1 301 311 EPE EPE . G 6 EPE A 1 302 312 EPE EPE . H 7 SO4 A 1 303 321 SO4 SO4 . I 7 SO4 A 1 304 324 SO4 SO4 . J 7 SO4 B 1 101 323 SO4 SO4 . K 8 EDO D 1 301 301 EDO EDO . L 8 EDO D 1 302 302 EDO EDO . M 7 SO4 D 1 303 322 SO4 SO4 . N 9 HOH A 1 401 334 HOH HOH . N 9 HOH A 2 402 343 HOH HOH . O 9 HOH B 1 201 347 HOH HOH . O 9 HOH B 2 202 331 HOH HOH . O 9 HOH B 3 203 337 HOH HOH . O 9 HOH B 4 204 339 HOH HOH . O 9 HOH B 5 205 342 HOH HOH . O 9 HOH B 6 206 332 HOH HOH . P 9 HOH D 1 401 345 HOH HOH . P 9 HOH D 2 402 338 HOH HOH . P 9 HOH D 3 403 336 HOH HOH . P 9 HOH D 4 404 333 HOH HOH . Q 9 HOH E 1 301 346 HOH HOH . Q 9 HOH E 2 302 348 HOH HOH . Q 9 HOH E 3 303 341 HOH HOH . Q 9 HOH E 4 304 344 HOH HOH . Q 9 HOH E 5 305 340 HOH HOH . Q 9 HOH E 6 306 335 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . G 6 56.304 -25.472 44.761 1 141.29 ? N1 EPE 302 A 1 HETATM 2 C C2 EPE . . . G 6 57.707 -25.248 45.221 1 121.7 ? C2 EPE 302 A 1 HETATM 3 C C3 EPE . . . G 6 58.719 -25.921 44.313 1 113.39 ? C3 EPE 302 A 1 HETATM 4 N N4 EPE . . . G 6 58.435 -27.365 44.259 1 119.07 ? N4 EPE 302 A 1 HETATM 5 C C5 EPE . . . G 6 57.093 -27.601 43.683 1 131.64 ? C5 EPE 302 A 1 HETATM 6 C C6 EPE . . . G 6 56.023 -26.915 44.541 1 139.02 ? C6 EPE 302 A 1 HETATM 7 C C7 EPE . . . G 6 59.47 -28.064 43.481 1 112.35 ? C7 EPE 302 A 1 HETATM 8 C C8 EPE . . . G 6 60.647 -28.392 44.392 1 108.65 ? C8 EPE 302 A 1 HETATM 9 O O8 EPE . . . G 6 61.541 -29.237 43.674 1 103.44 ? O8 EPE 302 A 1 HETATM 10 C C9 EPE . . . G 6 55.233 -24.924 45.644 1 152.84 ? C9 EPE 302 A 1 HETATM 11 C C10 EPE . . . G 6 55.513 -23.535 46.248 1 177.1 ? C10 EPE 302 A 1 HETATM 12 S S EPE . . . G 6 56.366 -23.547 47.698 1 201.3 ? S EPE 302 A 1 HETATM 13 O O1S EPE . . . G 6 57.702 -22.947 47.466 1 197.85 ? O1S EPE 302 A 1 HETATM 14 O O2S EPE . . . G 6 56.525 -24.919 48.244 1 203.18 ? O2S EPE 302 A 1 HETATM 15 O O3S EPE . . . G 6 55.653 -22.724 48.701 1 206.49 ? O3S EPE 302 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #