data_6ER5 # _model_server_result.job_id WrbjHJCC45Cq-Pb0MRsB0A _model_server_result.datetime_utc '2024-11-17 15:54:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6er5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6ER5 # _exptl.entry_id 6ER5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.467 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(diethylamino)ethyl 4-((3-(4-nitrophenyl)-3-oxopropyl)amino)benzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ER5 _cell.length_a 103.33 _cell.length_b 103.33 _cell.length_c 191.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ER5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 52 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 89 A CYS 89 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C22 H27 N3 O5' _chem_comp.formula_weight 413.467 _chem_comp.id BVN _chem_comp.mon_nstd_flag . _chem_comp.name '2-(diethylamino)ethyl 4-((3-(4-nitrophenyl)-3-oxopropyl)amino)benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAP BVN doub 70 n n CAP CAQ BVN sing 71 n n CAP CAO BVN sing 72 n n CAR CAQ BVN doub 73 n y CAR CAS BVN sing 74 n y CAQ CAB BVN sing 75 n y CAS CAD BVN doub 76 n y OAF NAE BVN doub 77 n n CAB CAC BVN doub 78 n y CAN CAO BVN sing 79 n n CAN NAM BVN sing 80 n n CAD CAC BVN sing 81 n y CAD NAE BVN sing 82 n n NAE OAT BVN sing 83 n n NAM CAL BVN sing 84 n n CAK CAL BVN doub 85 n y CAK CAJ BVN sing 86 n y CAL CBD BVN sing 87 n y CAJ CBB BVN doub 88 n y CBD CBC BVN doub 89 n y CAH CAG BVN sing 90 n n CBB CBC BVN sing 91 n y CBB CBA BVN sing 92 n n CAG NAW BVN sing 93 n n CAY OAZ BVN sing 94 n n CAY CAX BVN sing 95 n n CBA OAZ BVN sing 96 n n CBA OAI BVN doub 97 n n NAW CAX BVN sing 98 n n NAW CAV BVN sing 99 n n CAV CAU BVN sing 100 n n CAH H1 BVN sing 101 n n CAH H2 BVN sing 102 n n CAH H3 BVN sing 103 n n CAG H4 BVN sing 104 n n CAG H5 BVN sing 105 n n CAV H7 BVN sing 106 n n CAV H8 BVN sing 107 n n CAU H9 BVN sing 108 n n CAU H10 BVN sing 109 n n CAU H11 BVN sing 110 n n CAX H12 BVN sing 111 n n CAX H13 BVN sing 112 n n CAY H14 BVN sing 113 n n CAY H15 BVN sing 114 n n CAJ H16 BVN sing 115 n n CAK H17 BVN sing 116 n n CBC H18 BVN sing 117 n n CBD H19 BVN sing 118 n n NAM H20 BVN sing 119 n n CAN H21 BVN sing 120 n n CAN H22 BVN sing 121 n n CAO H23 BVN sing 122 n n CAO H24 BVN sing 123 n n CAR H25 BVN sing 124 n n CAS H26 BVN sing 125 n n CAC H27 BVN sing 126 n n CAB H28 BVN sing 127 n n # _atom_sites.entry_id 6ER5 _atom_sites.fract_transf_matrix[1][1] 0.009678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 1486 FAD FAD . C 3 BVN A 1 502 601 BVN DRG . D 4 SO4 A 1 503 602 SO4 SO4 . E 4 SO4 A 1 504 603 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH BVN . . . C 3 11.487 -30.981 17.601 0.8 150.04 ? CAH BVN 502 A 1 HETATM 2 C CAG BVN . . . C 3 10.118 -30.532 18.12 0.8 156.39 ? CAG BVN 502 A 1 HETATM 3 N NAW BVN . . . C 3 10.231 -29.728 19.36 0.8 161.94 ? NAW BVN 502 A 1 HETATM 4 C CAV BVN . . . C 3 10.371 -30.467 20.612 0.8 151.7 ? CAV BVN 502 A 1 HETATM 5 C CAU BVN . . . C 3 11.881 -30.483 20.93 0.8 143.86 ? CAU BVN 502 A 1 HETATM 6 C CAX BVN . . . C 3 8.831 -29.221 19.515 0.8 170.28 ? CAX BVN 502 A 1 HETATM 7 C CAY BVN . . . C 3 8.687 -27.914 18.703 0.8 179.18 ? CAY BVN 502 A 1 HETATM 8 O OAZ BVN . . . C 3 7.382 -27.307 18.927 0.8 187.59 ? OAZ BVN 502 A 1 HETATM 9 C CBA BVN . . . C 3 6.164 -27.955 18.898 0.8 194.95 ? CBA BVN 502 A 1 HETATM 10 O OAI BVN . . . C 3 5.321 -27.778 19.779 0.8 200.54 ? OAI BVN 502 A 1 HETATM 11 C CBB BVN . . . C 3 5.882 -28.813 17.818 0.8 191.6 ? CBB BVN 502 A 1 HETATM 12 C CAJ BVN . . . C 3 6.272 -28.504 16.504 0.8 177.94 ? CAJ BVN 502 A 1 HETATM 13 C CAK BVN . . . C 3 5.972 -29.385 15.461 0.8 170.46 ? CAK BVN 502 A 1 HETATM 14 C CBC BVN . . . C 3 5.177 -30.01 18.053 0.8 186.05 ? CBC BVN 502 A 1 HETATM 15 C CBD BVN . . . C 3 4.873 -30.888 17.005 0.8 176.54 ? CBD BVN 502 A 1 HETATM 16 C CAL BVN . . . C 3 5.278 -30.58 15.704 0.8 167.37 ? CAL BVN 502 A 1 HETATM 17 N NAM BVN . . . C 3 4.998 -31.391 14.683 0.8 151.99 ? NAM BVN 502 A 1 HETATM 18 C CAN BVN . . . C 3 4.197 -30.865 13.571 0.8 157.45 ? CAN BVN 502 A 1 HETATM 19 C CAO BVN . . . C 3 2.9 -31.631 13.583 0.8 163.84 ? CAO BVN 502 A 1 HETATM 20 C CAP BVN . . . C 3 2.884 -32.751 12.528 0.8 174.29 ? CAP BVN 502 A 1 HETATM 21 O OAA BVN . . . C 3 2.304 -32.619 11.447 0.8 170.87 ? OAA BVN 502 A 1 HETATM 22 C CAQ BVN . . . C 3 3.399 -33.986 12.908 0.8 176.43 ? CAQ BVN 502 A 1 HETATM 23 C CAR BVN . . . C 3 4.744 -34.29 12.7 0.8 173.52 ? CAR BVN 502 A 1 HETATM 24 C CAS BVN . . . C 3 5.24 -35.538 13.079 0.8 167.54 ? CAS BVN 502 A 1 HETATM 25 C CAD BVN . . . C 3 4.39 -36.489 13.664 0.8 162.57 ? CAD BVN 502 A 1 HETATM 26 N NAE BVN . . . C 3 4.854 -37.69 14.017 0.8 152.32 ? NAE BVN 502 A 1 HETATM 27 O OAT BVN . . . C 3 4.258 -38.376 15.19 0.8 144.29 ? OAT BVN 502 A 1 HETATM 28 O OAF BVN . . . C 3 5.914 -38.328 13.175 0.8 131.59 ? OAF BVN 502 A 1 HETATM 29 C CAC BVN . . . C 3 3.039 -36.181 13.863 0.8 168.64 ? CAC BVN 502 A 1 HETATM 30 C CAB BVN . . . C 3 2.55 -34.935 13.485 0.8 174.19 ? CAB BVN 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #