data_6ER9 # _model_server_result.job_id 1Hq0FWkAzMkky2e_jr7qbA _model_server_result.datetime_utc '2024-10-20 00:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6er9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6ER9 # _exptl.entry_id 6ER9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.02 _cell.angle_gamma 90 _cell.entry_id 6ER9 _cell.length_a 54.08 _cell.length_b 64.44 _cell.length_c 186.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ER9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 328 n n PA O2A NAP sing 329 n n PA O5B NAP sing 330 n n PA O3 NAP sing 331 n n O2A HOA2 NAP sing 332 n n O5B C5B NAP sing 333 n n C5B C4B NAP sing 334 n n C5B H51A NAP sing 335 n n C5B H52A NAP sing 336 n n C4B O4B NAP sing 337 n n C4B C3B NAP sing 338 n n C4B H4B NAP sing 339 n n O4B C1B NAP sing 340 n n C3B O3B NAP sing 341 n n C3B C2B NAP sing 342 n n C3B H3B NAP sing 343 n n O3B HO3A NAP sing 344 n n C2B O2B NAP sing 345 n n C2B C1B NAP sing 346 n n C2B H2B NAP sing 347 n n O2B P2B NAP sing 348 n n C1B N9A NAP sing 349 n n C1B H1B NAP sing 350 n n N9A C8A NAP sing 351 n y N9A C4A NAP sing 352 n y C8A N7A NAP doub 353 n y C8A H8A NAP sing 354 n n N7A C5A NAP sing 355 n y C5A C6A NAP sing 356 n y C5A C4A NAP doub 357 n y C6A N6A NAP sing 358 n n C6A N1A NAP doub 359 n y N6A H61A NAP sing 360 n n N6A H62A NAP sing 361 n n N1A C2A NAP sing 362 n y C2A N3A NAP doub 363 n y C2A H2A NAP sing 364 n n N3A C4A NAP sing 365 n y O3 PN NAP sing 366 n n PN O1N NAP doub 367 n n PN O2N NAP sing 368 n n PN O5D NAP sing 369 n n O5D C5D NAP sing 370 n n C5D C4D NAP sing 371 n n C5D H51N NAP sing 372 n n C5D H52N NAP sing 373 n n C4D O4D NAP sing 374 n n C4D C3D NAP sing 375 n n C4D H4D NAP sing 376 n n O4D C1D NAP sing 377 n n C3D O3D NAP sing 378 n n C3D C2D NAP sing 379 n n C3D H3D NAP sing 380 n n O3D HO3N NAP sing 381 n n C2D O2D NAP sing 382 n n C2D C1D NAP sing 383 n n C2D H2D NAP sing 384 n n O2D HO2N NAP sing 385 n n C1D N1N NAP sing 386 n n C1D H1D NAP sing 387 n n N1N C2N NAP sing 388 n y N1N C6N NAP doub 389 n y C2N C3N NAP doub 390 n y C2N H2N NAP sing 391 n n C3N C7N NAP sing 392 n n C3N C4N NAP sing 393 n y C7N O7N NAP doub 394 n n C7N N7N NAP sing 395 n n N7N H71N NAP sing 396 n n N7N H72N NAP sing 397 n n C4N C5N NAP doub 398 n y C4N H4N NAP sing 399 n n C5N C6N NAP sing 400 n y C5N H5N NAP sing 401 n n C6N H6N NAP sing 402 n n P2B O1X NAP doub 403 n n P2B O2X NAP sing 404 n n P2B O3X NAP sing 405 n n O2X HOP2 NAP sing 406 n n O3X HOP3 NAP sing 407 n n # _atom_sites.entry_id 6ER9 _atom_sites.fract_transf_matrix[1][1] 0.018491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 NAP A 1 602 602 NAP NAP . E 2 FAD B 1 601 601 FAD FAD . F 3 NAP B 1 602 602 NAP NAP . G 4 HOH A 1 701 217 HOH HOH . G 4 HOH A 2 702 91 HOH HOH . G 4 HOH A 3 703 43 HOH HOH . G 4 HOH A 4 704 45 HOH HOH . G 4 HOH A 5 705 35 HOH HOH . G 4 HOH A 6 706 125 HOH HOH . G 4 HOH A 7 707 84 HOH HOH . G 4 HOH A 8 708 21 HOH HOH . G 4 HOH A 9 709 86 HOH HOH . G 4 HOH A 10 710 52 HOH HOH . G 4 HOH A 11 711 80 HOH HOH . G 4 HOH A 12 712 121 HOH HOH . G 4 HOH A 13 713 292 HOH HOH . G 4 HOH A 14 714 158 HOH HOH . G 4 HOH A 15 715 111 HOH HOH . G 4 HOH A 16 716 27 HOH HOH . G 4 HOH A 17 717 65 HOH HOH . G 4 HOH A 18 718 242 HOH HOH . G 4 HOH A 19 719 40 HOH HOH . G 4 HOH A 20 720 60 HOH HOH . G 4 HOH A 21 721 207 HOH HOH . G 4 HOH A 22 722 139 HOH HOH . G 4 HOH A 23 723 81 HOH HOH . G 4 HOH A 24 724 147 HOH HOH . G 4 HOH A 25 725 93 HOH HOH . G 4 HOH A 26 726 11 HOH HOH . G 4 HOH A 27 727 159 HOH HOH . G 4 HOH A 28 728 46 HOH HOH . G 4 HOH A 29 729 83 HOH HOH . G 4 HOH A 30 730 17 HOH HOH . G 4 HOH A 31 731 176 HOH HOH . G 4 HOH A 32 732 71 HOH HOH . G 4 HOH A 33 733 203 HOH HOH . G 4 HOH A 34 734 58 HOH HOH . G 4 HOH A 35 735 32 HOH HOH . G 4 HOH A 36 736 276 HOH HOH . G 4 HOH A 37 737 131 HOH HOH . G 4 HOH A 38 738 34 HOH HOH . G 4 HOH A 39 739 210 HOH HOH . G 4 HOH A 40 740 67 HOH HOH . G 4 HOH A 41 741 347 HOH HOH . G 4 HOH A 42 742 175 HOH HOH . G 4 HOH A 43 743 98 HOH HOH . G 4 HOH A 44 744 48 HOH HOH . G 4 HOH A 45 745 143 HOH HOH . G 4 HOH A 46 746 236 HOH HOH . G 4 HOH A 47 747 269 HOH HOH . G 4 HOH A 48 748 171 HOH HOH . G 4 HOH A 49 749 323 HOH HOH . G 4 HOH A 50 750 36 HOH HOH . G 4 HOH A 51 751 66 HOH HOH . G 4 HOH A 52 752 29 HOH HOH . G 4 HOH A 53 753 63 HOH HOH . G 4 HOH A 54 754 12 HOH HOH . G 4 HOH A 55 755 247 HOH HOH . G 4 HOH A 56 756 294 HOH HOH . G 4 HOH A 57 757 160 HOH HOH . G 4 HOH A 58 758 332 HOH HOH . G 4 HOH A 59 759 166 HOH HOH . G 4 HOH A 60 760 100 HOH HOH . G 4 HOH A 61 761 3 HOH HOH . G 4 HOH A 62 762 319 HOH HOH . G 4 HOH A 63 763 151 HOH HOH . G 4 HOH A 64 764 161 HOH HOH . G 4 HOH A 65 765 243 HOH HOH . G 4 HOH A 66 766 18 HOH HOH . G 4 HOH A 67 767 193 HOH HOH . G 4 HOH A 68 768 54 HOH HOH . G 4 HOH A 69 769 190 HOH HOH . G 4 HOH A 70 770 69 HOH HOH . G 4 HOH A 71 771 105 HOH HOH . G 4 HOH A 72 772 73 HOH HOH . G 4 HOH A 73 773 39 HOH HOH . G 4 HOH A 74 774 232 HOH HOH . G 4 HOH A 75 775 231 HOH HOH . G 4 HOH A 76 776 72 HOH HOH . G 4 HOH A 77 777 167 HOH HOH . G 4 HOH A 78 778 334 HOH HOH . G 4 HOH A 79 779 42 HOH HOH . G 4 HOH A 80 780 103 HOH HOH . G 4 HOH A 81 781 194 HOH HOH . G 4 HOH A 82 782 47 HOH HOH . G 4 HOH A 83 783 211 HOH HOH . G 4 HOH A 84 784 256 HOH HOH . G 4 HOH A 85 785 141 HOH HOH . G 4 HOH A 86 786 140 HOH HOH . G 4 HOH A 87 787 155 HOH HOH . G 4 HOH A 88 788 97 HOH HOH . G 4 HOH A 89 789 205 HOH HOH . G 4 HOH A 90 790 278 HOH HOH . G 4 HOH A 91 791 296 HOH HOH . G 4 HOH A 92 792 76 HOH HOH . G 4 HOH A 93 793 189 HOH HOH . G 4 HOH A 94 794 197 HOH HOH . G 4 HOH A 95 795 344 HOH HOH . G 4 HOH A 96 796 200 HOH HOH . G 4 HOH A 97 797 145 HOH HOH . G 4 HOH A 98 798 251 HOH HOH . G 4 HOH A 99 799 38 HOH HOH . G 4 HOH A 100 800 180 HOH HOH . G 4 HOH A 101 801 313 HOH HOH . G 4 HOH A 102 802 168 HOH HOH . G 4 HOH A 103 803 265 HOH HOH . G 4 HOH A 104 804 300 HOH HOH . G 4 HOH A 105 805 216 HOH HOH . G 4 HOH A 106 806 260 HOH HOH . G 4 HOH A 107 807 299 HOH HOH . G 4 HOH A 108 808 110 HOH HOH . G 4 HOH A 109 809 274 HOH HOH . G 4 HOH A 110 810 285 HOH HOH . G 4 HOH A 111 811 272 HOH HOH . G 4 HOH A 112 812 282 HOH HOH . H 4 HOH B 1 701 330 HOH HOH . H 4 HOH B 2 702 132 HOH HOH . H 4 HOH B 3 703 248 HOH HOH . H 4 HOH B 4 704 152 HOH HOH . H 4 HOH B 5 705 213 HOH HOH . H 4 HOH B 6 706 310 HOH HOH . H 4 HOH B 7 707 106 HOH HOH . H 4 HOH B 8 708 187 HOH HOH . H 4 HOH B 9 709 44 HOH HOH . H 4 HOH B 10 710 318 HOH HOH . H 4 HOH B 11 711 68 HOH HOH . H 4 HOH B 12 712 74 HOH HOH . H 4 HOH B 13 713 303 HOH HOH . H 4 HOH B 14 714 133 HOH HOH . H 4 HOH B 15 715 351 HOH HOH . H 4 HOH B 16 716 198 HOH HOH . H 4 HOH B 17 717 188 HOH HOH . H 4 HOH B 18 718 162 HOH HOH . H 4 HOH B 19 719 61 HOH HOH . H 4 HOH B 20 720 308 HOH HOH . H 4 HOH B 21 721 109 HOH HOH . H 4 HOH B 22 722 329 HOH HOH . H 4 HOH B 23 723 108 HOH HOH . H 4 HOH B 24 724 107 HOH HOH . H 4 HOH B 25 725 146 HOH HOH . H 4 HOH B 26 726 113 HOH HOH . H 4 HOH B 27 727 127 HOH HOH . H 4 HOH B 28 728 157 HOH HOH . H 4 HOH B 29 729 85 HOH HOH . H 4 HOH B 30 730 149 HOH HOH . H 4 HOH B 31 731 311 HOH HOH . H 4 HOH B 32 732 350 HOH HOH . H 4 HOH B 33 733 290 HOH HOH . H 4 HOH B 34 734 92 HOH HOH . H 4 HOH B 35 735 215 HOH HOH . H 4 HOH B 36 736 320 HOH HOH . H 4 HOH B 37 737 353 HOH HOH . H 4 HOH B 38 738 307 HOH HOH . H 4 HOH B 39 739 212 HOH HOH . H 4 HOH B 40 740 352 HOH HOH . H 4 HOH B 41 741 273 HOH HOH . H 4 HOH B 42 742 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 3 37.791 -8.243 16.884 1 80.21 ? PA NAP 602 B 1 HETATM 2 O O1A NAP . . . F 3 37.47 -7.931 18.29 1 82.47 ? O1A NAP 602 B 1 HETATM 3 O O2A NAP . . . F 3 36.511 -8.657 16.161 1 79.23 ? O2A NAP 602 B 1 HETATM 4 O O5B NAP . . . F 3 38.517 -6.997 16.132 1 82.72 ? O5B NAP 602 B 1 HETATM 5 C C5B NAP . . . F 3 38.466 -6.807 14.704 1 86.87 ? C5B NAP 602 B 1 HETATM 6 C C4B NAP . . . F 3 39.138 -5.494 14.386 1 90.16 ? C4B NAP 602 B 1 HETATM 7 O O4B NAP . . . F 3 39.122 -5.273 12.956 1 90.9 ? O4B NAP 602 B 1 HETATM 8 C C3B NAP . . . F 3 38.474 -4.262 14.997 1 89 ? C3B NAP 602 B 1 HETATM 9 O O3B NAP . . . F 3 39.418 -3.203 15.098 1 88.12 ? O3B NAP 602 B 1 HETATM 10 C C2B NAP . . . F 3 37.432 -3.981 13.92 1 87.52 ? C2B NAP 602 B 1 HETATM 11 O O2B NAP . . . F 3 36.81 -2.685 14.037 1 83.87 ? O2B NAP 602 B 1 HETATM 12 C C1B NAP . . . F 3 38.269 -4.183 12.662 1 90.81 ? C1B NAP 602 B 1 HETATM 13 N N9A NAP . . . F 3 37.476 -4.518 11.482 1 94.08 ? N9A NAP 602 B 1 HETATM 14 C C8A NAP . . . F 3 36.531 -5.505 11.375 1 95.04 ? C8A NAP 602 B 1 HETATM 15 N N7A NAP . . . F 3 35.965 -5.575 10.194 1 95.93 ? N7A NAP 602 B 1 HETATM 16 C C5A NAP . . . F 3 36.575 -4.56 9.473 1 94.45 ? C5A NAP 602 B 1 HETATM 17 C C6A NAP . . . F 3 36.399 -4.089 8.158 1 91.39 ? C6A NAP 602 B 1 HETATM 18 N N6A NAP . . . F 3 35.552 -4.635 7.28 1 88.7 ? N6A NAP 602 B 1 HETATM 19 N N1A NAP . . . F 3 37.142 -3.031 7.766 1 90.51 ? N1A NAP 602 B 1 HETATM 20 C C2A NAP . . . F 3 38.01 -2.498 8.63 1 90.9 ? C2A NAP 602 B 1 HETATM 21 N N3A NAP . . . F 3 38.271 -2.861 9.888 1 92.23 ? N3A NAP 602 B 1 HETATM 22 C C4A NAP . . . F 3 37.512 -3.901 10.256 1 93.75 ? C4A NAP 602 B 1 HETATM 23 O O3 NAP . . . F 3 38.85 -9.428 16.789 1 80.1 ? O3 NAP 602 B 1 HETATM 24 P PN NAP . . . F 3 40.272 -9.699 17.467 1 80.4 ? PN NAP 602 B 1 HETATM 25 O O1N NAP . . . F 3 40.945 -8.4 17.687 1 76.74 ? O1N NAP 602 B 1 HETATM 26 O O2N NAP . . . F 3 40.979 -10.746 16.698 1 81.38 ? O2N NAP 602 B 1 HETATM 27 O O5D NAP . . . F 3 39.818 -10.305 18.88 1 84.42 ? O5D NAP 602 B 1 HETATM 28 C C5D NAP . . . F 3 38.519 -10.929 19.043 1 82.99 ? C5D NAP 602 B 1 HETATM 29 C C4D NAP . . . F 3 38.363 -11.553 20.412 1 79.95 ? C4D NAP 602 B 1 HETATM 30 O O4D NAP . . . F 3 39.342 -12.602 20.599 1 76.82 ? O4D NAP 602 B 1 HETATM 31 C C3D NAP . . . F 3 38.558 -10.625 21.606 1 79.57 ? C3D NAP 602 B 1 HETATM 32 O O3D NAP . . . F 3 37.375 -9.892 21.911 1 79.26 ? O3D NAP 602 B 1 HETATM 33 C C2D NAP . . . F 3 38.92 -11.616 22.714 1 76.33 ? C2D NAP 602 B 1 HETATM 34 O O2D NAP . . . F 3 37.773 -12.266 23.247 1 77.21 ? O2D NAP 602 B 1 HETATM 35 C C1D NAP . . . F 3 39.768 -12.63 21.94 1 74.9 ? C1D NAP 602 B 1 HETATM 36 N N1N NAP . . . F 3 41.264 -12.301 21.981 1 72.79 ? N1N NAP 602 B 1 HETATM 37 C C2N NAP . . . F 3 41.712 -12.127 23.242 1 71.26 ? C2N NAP 602 B 1 HETATM 38 C C3N NAP . . . F 3 43.006 -11.7 23.461 1 72.59 ? C3N NAP 602 B 1 HETATM 39 C C7N NAP . . . F 3 43.521 -11.605 24.872 1 73.54 ? C7N NAP 602 B 1 HETATM 40 O O7N NAP . . . F 3 44.622 -11.078 25.089 1 72.04 ? O7N NAP 602 B 1 HETATM 41 N N7N NAP . . . F 3 42.742 -12.04 25.842 1 77.64 ? N7N NAP 602 B 1 HETATM 42 C C4N NAP . . . F 3 43.825 -11.463 22.362 1 74.25 ? C4N NAP 602 B 1 HETATM 43 C C5N NAP . . . F 3 43.344 -11.675 21.082 1 74.44 ? C5N NAP 602 B 1 HETATM 44 C C6N NAP . . . F 3 42.05 -12.104 20.91 1 73.23 ? C6N NAP 602 B 1 HETATM 45 P P2B NAP . . . F 3 35.285 -2.592 14.558 1 84.62 ? P2B NAP 602 B 1 HETATM 46 O O1X NAP . . . F 3 35.284 -2.356 16.029 1 87.65 ? O1X NAP 602 B 1 HETATM 47 O O2X NAP . . . F 3 34.611 -1.468 13.778 1 85.91 ? O2X NAP 602 B 1 HETATM 48 O O3X NAP . . . F 3 34.625 -3.9 14.148 1 81.9 ? O3X NAP 602 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #