data_6ERW
#
_model_server_result.job_id            In6whMdVys_eRzChzzP9-Q 
_model_server_result.datetime_utc      '2025-08-31 01:33:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6erw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6ERW 
#
_exptl.entry_id    6ERW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ERW 
_cell.length_a            58.622 
_cell.length_b            71.704 
_cell.length_c            109.783 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ERW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 276 n n 
C1 H11 MPD sing 277 n n 
C1 H12 MPD sing 278 n n 
C1 H13 MPD sing 279 n n 
C2 O2 MPD sing 280 n n 
C2 CM MPD sing 281 n n 
C2 C3 MPD sing 282 n n 
O2 HO2 MPD sing 283 n n 
CM HM1 MPD sing 284 n n 
CM HM2 MPD sing 285 n n 
CM HM3 MPD sing 286 n n 
C3 C4 MPD sing 287 n n 
C3 H31 MPD sing 288 n n 
C3 H32 MPD sing 289 n n 
C4 O4 MPD sing 290 n n 
C4 C5 MPD sing 291 n n 
C4 H4 MPD sing 292 n n 
O4 HO4 MPD sing 293 n n 
C5 H51 MPD sing 294 n n 
C5 H52 MPD sing 295 n n 
C5 H53 MPD sing 296 n n 
#
_atom_sites.entry_id                     6ERW 
_atom_sites.fract_transf_matrix[1][1]    0.017058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 M77 A 1 401 1 M77 FAS . 
D 4 MPD A 1 402 1 MPD MPD . 
E 5 HOH A 1 501 202 HOH HOH . 
E 5 HOH A 2 502 54 HOH HOH . 
E 5 HOH A 3 503 82 HOH HOH . 
E 5 HOH A 4 504 121 HOH HOH . 
E 5 HOH A 5 505 139 HOH HOH . 
E 5 HOH A 6 506 142 HOH HOH . 
E 5 HOH A 7 507 60 HOH HOH . 
E 5 HOH A 8 508 153 HOH HOH . 
E 5 HOH A 9 509 70 HOH HOH . 
E 5 HOH A 10 510 168 HOH HOH . 
E 5 HOH A 11 511 47 HOH HOH . 
E 5 HOH A 12 512 159 HOH HOH . 
E 5 HOH A 13 513 177 HOH HOH . 
E 5 HOH A 14 514 58 HOH HOH . 
E 5 HOH A 15 515 134 HOH HOH . 
E 5 HOH A 16 516 26 HOH HOH . 
E 5 HOH A 17 517 4 HOH HOH . 
E 5 HOH A 18 518 114 HOH HOH . 
E 5 HOH A 19 519 173 HOH HOH . 
E 5 HOH A 20 520 51 HOH HOH . 
E 5 HOH A 21 521 22 HOH HOH . 
E 5 HOH A 22 522 78 HOH HOH . 
E 5 HOH A 23 523 163 HOH HOH . 
E 5 HOH A 24 524 88 HOH HOH . 
E 5 HOH A 25 525 198 HOH HOH . 
E 5 HOH A 26 526 180 HOH HOH . 
E 5 HOH A 27 527 63 HOH HOH . 
E 5 HOH A 28 528 56 HOH HOH . 
E 5 HOH A 29 529 169 HOH HOH . 
E 5 HOH A 30 530 10 HOH HOH . 
E 5 HOH A 31 531 81 HOH HOH . 
E 5 HOH A 32 532 113 HOH HOH . 
E 5 HOH A 33 533 7 HOH HOH . 
E 5 HOH A 34 534 23 HOH HOH . 
E 5 HOH A 35 535 36 HOH HOH . 
E 5 HOH A 36 536 55 HOH HOH . 
E 5 HOH A 37 537 33 HOH HOH . 
E 5 HOH A 38 538 125 HOH HOH . 
E 5 HOH A 39 539 126 HOH HOH . 
E 5 HOH A 40 540 11 HOH HOH . 
E 5 HOH A 41 541 41 HOH HOH . 
E 5 HOH A 42 542 14 HOH HOH . 
E 5 HOH A 43 543 102 HOH HOH . 
E 5 HOH A 44 544 9 HOH HOH . 
E 5 HOH A 45 545 93 HOH HOH . 
E 5 HOH A 46 546 8 HOH HOH . 
E 5 HOH A 47 547 191 HOH HOH . 
E 5 HOH A 48 548 115 HOH HOH . 
E 5 HOH A 49 549 123 HOH HOH . 
E 5 HOH A 50 550 57 HOH HOH . 
E 5 HOH A 51 551 84 HOH HOH . 
E 5 HOH A 52 552 181 HOH HOH . 
E 5 HOH A 53 553 5 HOH HOH . 
E 5 HOH A 54 554 148 HOH HOH . 
E 5 HOH A 55 555 132 HOH HOH . 
E 5 HOH A 56 556 161 HOH HOH . 
E 5 HOH A 57 557 18 HOH HOH . 
E 5 HOH A 58 558 17 HOH HOH . 
E 5 HOH A 59 559 75 HOH HOH . 
E 5 HOH A 60 560 6 HOH HOH . 
E 5 HOH A 61 561 117 HOH HOH . 
E 5 HOH A 62 562 71 HOH HOH . 
E 5 HOH A 63 563 118 HOH HOH . 
E 5 HOH A 64 564 155 HOH HOH . 
E 5 HOH A 65 565 160 HOH HOH . 
E 5 HOH A 66 566 15 HOH HOH . 
E 5 HOH A 67 567 204 HOH HOH . 
E 5 HOH A 68 568 197 HOH HOH . 
E 5 HOH A 69 569 192 HOH HOH . 
E 5 HOH A 70 570 99 HOH HOH . 
E 5 HOH A 71 571 29 HOH HOH . 
E 5 HOH A 72 572 108 HOH HOH . 
E 5 HOH A 73 573 119 HOH HOH . 
E 5 HOH A 74 574 31 HOH HOH . 
E 5 HOH A 75 575 164 HOH HOH . 
E 5 HOH A 76 576 52 HOH HOH . 
E 5 HOH A 77 577 46 HOH HOH . 
E 5 HOH A 78 578 28 HOH HOH . 
E 5 HOH A 79 579 194 HOH HOH . 
E 5 HOH A 80 580 178 HOH HOH . 
E 5 HOH A 81 581 34 HOH HOH . 
E 5 HOH A 82 582 16 HOH HOH . 
E 5 HOH A 83 583 37 HOH HOH . 
E 5 HOH A 84 584 20 HOH HOH . 
E 5 HOH A 85 585 21 HOH HOH . 
E 5 HOH A 86 586 129 HOH HOH . 
E 5 HOH A 87 587 25 HOH HOH . 
E 5 HOH A 88 588 27 HOH HOH . 
E 5 HOH A 89 589 64 HOH HOH . 
E 5 HOH A 90 590 112 HOH HOH . 
E 5 HOH A 91 591 130 HOH HOH . 
E 5 HOH A 92 592 39 HOH HOH . 
E 5 HOH A 93 593 77 HOH HOH . 
E 5 HOH A 94 594 133 HOH HOH . 
E 5 HOH A 95 595 175 HOH HOH . 
E 5 HOH A 96 596 90 HOH HOH . 
E 5 HOH A 97 597 80 HOH HOH . 
E 5 HOH A 98 598 107 HOH HOH . 
E 5 HOH A 99 599 74 HOH HOH . 
E 5 HOH A 100 600 208 HOH HOH . 
E 5 HOH A 101 601 12 HOH HOH . 
E 5 HOH A 102 602 61 HOH HOH . 
E 5 HOH A 103 603 89 HOH HOH . 
E 5 HOH A 104 604 145 HOH HOH . 
E 5 HOH A 105 605 176 HOH HOH . 
E 5 HOH A 106 606 53 HOH HOH . 
E 5 HOH A 107 607 185 HOH HOH . 
E 5 HOH A 108 608 43 HOH HOH . 
E 5 HOH A 109 609 13 HOH HOH . 
E 5 HOH A 110 610 167 HOH HOH . 
E 5 HOH A 111 611 85 HOH HOH . 
E 5 HOH A 112 612 65 HOH HOH . 
E 5 HOH A 113 613 127 HOH HOH . 
E 5 HOH A 114 614 152 HOH HOH . 
E 5 HOH A 115 615 30 HOH HOH . 
E 5 HOH A 116 616 100 HOH HOH . 
E 5 HOH A 117 617 106 HOH HOH . 
E 5 HOH A 118 618 105 HOH HOH . 
E 5 HOH A 119 619 91 HOH HOH . 
E 5 HOH A 120 620 83 HOH HOH . 
E 5 HOH A 121 621 44 HOH HOH . 
E 5 HOH A 122 622 137 HOH HOH . 
E 5 HOH A 123 623 24 HOH HOH . 
E 5 HOH A 124 624 187 HOH HOH . 
E 5 HOH A 125 625 66 HOH HOH . 
E 5 HOH A 126 626 38 HOH HOH . 
E 5 HOH A 127 627 179 HOH HOH . 
E 5 HOH A 128 628 120 HOH HOH . 
E 5 HOH A 129 629 86 HOH HOH . 
E 5 HOH A 130 630 72 HOH HOH . 
E 5 HOH A 131 631 49 HOH HOH . 
E 5 HOH A 132 632 170 HOH HOH . 
E 5 HOH A 133 633 97 HOH HOH . 
E 5 HOH A 134 634 92 HOH HOH . 
E 5 HOH A 135 635 35 HOH HOH . 
E 5 HOH A 136 636 188 HOH HOH . 
E 5 HOH A 137 637 199 HOH HOH . 
E 5 HOH A 138 638 103 HOH HOH . 
E 5 HOH A 139 639 210 HOH HOH . 
E 5 HOH A 140 640 110 HOH HOH . 
E 5 HOH A 141 641 98 HOH HOH . 
E 5 HOH A 142 642 144 HOH HOH . 
E 5 HOH A 143 643 48 HOH HOH . 
E 5 HOH A 144 644 200 HOH HOH . 
E 5 HOH A 145 645 193 HOH HOH . 
E 5 HOH A 146 646 207 HOH HOH . 
E 5 HOH A 147 647 182 HOH HOH . 
E 5 HOH A 148 648 131 HOH HOH . 
E 5 HOH A 149 649 40 HOH HOH . 
E 5 HOH A 150 650 209 HOH HOH . 
E 5 HOH A 151 651 111 HOH HOH . 
E 5 HOH A 152 652 69 HOH HOH . 
E 5 HOH A 153 653 67 HOH HOH . 
E 5 HOH A 154 654 116 HOH HOH . 
E 5 HOH A 155 655 165 HOH HOH . 
E 5 HOH A 156 656 143 HOH HOH . 
E 5 HOH A 157 657 138 HOH HOH . 
E 5 HOH A 158 658 157 HOH HOH . 
E 5 HOH A 159 659 62 HOH HOH . 
E 5 HOH A 160 660 156 HOH HOH . 
E 5 HOH A 161 661 158 HOH HOH . 
E 5 HOH A 162 662 150 HOH HOH . 
E 5 HOH A 163 663 190 HOH HOH . 
F 5 HOH D 1 201 201 HOH HOH . 
F 5 HOH D 2 202 45 HOH HOH . 
F 5 HOH D 3 203 184 HOH HOH . 
F 5 HOH D 4 204 87 HOH HOH . 
F 5 HOH D 5 205 124 HOH HOH . 
F 5 HOH D 6 206 149 HOH HOH . 
F 5 HOH D 7 207 135 HOH HOH . 
F 5 HOH D 8 208 154 HOH HOH . 
F 5 HOH D 9 209 122 HOH HOH . 
F 5 HOH D 10 210 128 HOH HOH . 
F 5 HOH D 11 211 96 HOH HOH . 
F 5 HOH D 12 212 136 HOH HOH . 
F 5 HOH D 13 213 68 HOH HOH . 
F 5 HOH D 14 214 141 HOH HOH . 
F 5 HOH D 15 215 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 10.479 -15.859 -3.128 1 34.58 ? C1 MPD 402 A 1 
HETATM 2 C C2 MPD . . . D 4 11.025 -14.438 -3.065 1 33.86 ? C2 MPD 402 A 1 
HETATM 3 O O2 MPD . . . D 4 10.172 -13.646 -2.195 1 38.38 ? O2 MPD 402 A 1 
HETATM 4 C CM MPD . . . D 4 12.434 -14.459 -2.464 1 22.8 ? CM MPD 402 A 1 
HETATM 5 C C3 MPD . . . D 4 11.05 -13.824 -4.469 1 34.31 ? C3 MPD 402 A 1 
HETATM 6 C C4 MPD . . . D 4 9.663 -13.524 -5.066 1 45.43 ? C4 MPD 402 A 1 
HETATM 7 O O4 MPD . . . D 4 8.725 -13.113 -4.088 1 39.99 ? O4 MPD 402 A 1 
HETATM 8 C C5 MPD . . . D 4 9.744 -12.469 -6.17 1 35.85 ? C5 MPD 402 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#