data_6ES4 # _model_server_result.job_id u9TW85wMU3jT2vDwzUjKsw _model_server_result.datetime_utc '2024-11-22 10:56:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6es4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":308}' # _entry.id 6ES4 # _exptl.entry_id 6ES4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.12 _cell.angle_gamma 90 _cell.entry_id 6ES4 _cell.length_a 33.783 _cell.length_b 128.528 _cell.length_c 79.585 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ES4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 165 A ASN 186 1_555 A N CME 166 A CME 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CME 166 A CME 187 1_555 A N GLY 167 A GLY 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C ASN 165 B ASN 186 1_555 B N CME 166 B CME 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C CME 166 B CME 187 1_555 B N GLY 167 B GLY 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 6ES4 _atom_sites.fract_transf_matrix[1][1] 0.029601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005818 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 2 SO4 SO4 . D 2 SO4 A 1 302 3 SO4 SO4 . E 2 SO4 A 1 303 4 SO4 SO4 . F 2 SO4 A 1 304 5 SO4 SO4 . G 2 SO4 A 1 305 7 SO4 SO4 . H 3 EDO A 1 306 1 EDO EDO . I 3 EDO A 1 307 3 EDO EDO . J 3 EDO A 1 308 4 EDO EDO . K 3 EDO A 1 309 6 EDO EDO . L 2 SO4 B 1 301 1 SO4 SO4 . M 2 SO4 B 1 302 6 SO4 SO4 . N 3 EDO B 1 303 2 EDO EDO . O 3 EDO B 1 304 5 EDO EDO . P 4 HOH A 1 401 15 HOH HOH . P 4 HOH A 2 402 63 HOH HOH . P 4 HOH A 3 403 56 HOH HOH . P 4 HOH A 4 404 51 HOH HOH . P 4 HOH A 5 405 47 HOH HOH . P 4 HOH A 6 406 3 HOH HOH . P 4 HOH A 7 407 40 HOH HOH . P 4 HOH A 8 408 20 HOH HOH . P 4 HOH A 9 409 10 HOH HOH . P 4 HOH A 10 410 21 HOH HOH . P 4 HOH A 11 411 98 HOH HOH . P 4 HOH A 12 412 17 HOH HOH . P 4 HOH A 13 413 54 HOH HOH . P 4 HOH A 14 414 18 HOH HOH . P 4 HOH A 15 415 34 HOH HOH . P 4 HOH A 16 416 41 HOH HOH . P 4 HOH A 17 417 4 HOH HOH . P 4 HOH A 18 418 71 HOH HOH . P 4 HOH A 19 419 45 HOH HOH . P 4 HOH A 20 420 6 HOH HOH . P 4 HOH A 21 421 32 HOH HOH . P 4 HOH A 22 422 43 HOH HOH . P 4 HOH A 23 423 11 HOH HOH . P 4 HOH A 24 424 53 HOH HOH . P 4 HOH A 25 425 52 HOH HOH . P 4 HOH A 26 426 61 HOH HOH . P 4 HOH A 27 427 19 HOH HOH . P 4 HOH A 28 428 38 HOH HOH . P 4 HOH A 29 429 70 HOH HOH . P 4 HOH A 30 430 46 HOH HOH . P 4 HOH A 31 431 57 HOH HOH . P 4 HOH A 32 432 105 HOH HOH . P 4 HOH A 33 433 5 HOH HOH . P 4 HOH A 34 434 103 HOH HOH . P 4 HOH A 35 435 97 HOH HOH . P 4 HOH A 36 436 28 HOH HOH . P 4 HOH A 37 437 59 HOH HOH . P 4 HOH A 38 438 72 HOH HOH . P 4 HOH A 39 439 12 HOH HOH . P 4 HOH A 40 440 49 HOH HOH . P 4 HOH A 41 441 36 HOH HOH . P 4 HOH A 42 442 9 HOH HOH . P 4 HOH A 43 443 44 HOH HOH . P 4 HOH A 44 444 14 HOH HOH . P 4 HOH A 45 445 23 HOH HOH . P 4 HOH A 46 446 39 HOH HOH . P 4 HOH A 47 447 85 HOH HOH . P 4 HOH A 48 448 67 HOH HOH . P 4 HOH A 49 449 65 HOH HOH . P 4 HOH A 50 450 101 HOH HOH . P 4 HOH A 51 451 73 HOH HOH . P 4 HOH A 52 452 27 HOH HOH . P 4 HOH A 53 453 26 HOH HOH . Q 4 HOH B 1 401 22 HOH HOH . Q 4 HOH B 2 402 102 HOH HOH . Q 4 HOH B 3 403 60 HOH HOH . Q 4 HOH B 4 404 13 HOH HOH . Q 4 HOH B 5 405 76 HOH HOH . Q 4 HOH B 6 406 7 HOH HOH . Q 4 HOH B 7 407 104 HOH HOH . Q 4 HOH B 8 408 84 HOH HOH . Q 4 HOH B 9 409 1 HOH HOH . Q 4 HOH B 10 410 42 HOH HOH . Q 4 HOH B 11 411 8 HOH HOH . Q 4 HOH B 12 412 35 HOH HOH . Q 4 HOH B 13 413 87 HOH HOH . Q 4 HOH B 14 414 96 HOH HOH . Q 4 HOH B 15 415 58 HOH HOH . Q 4 HOH B 16 416 24 HOH HOH . Q 4 HOH B 17 417 31 HOH HOH . Q 4 HOH B 18 418 48 HOH HOH . Q 4 HOH B 19 419 50 HOH HOH . Q 4 HOH B 20 420 82 HOH HOH . Q 4 HOH B 21 421 30 HOH HOH . Q 4 HOH B 22 422 66 HOH HOH . Q 4 HOH B 23 423 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 30.03 111.235 103.629 1 84.05 ? C1 EDO 308 A 1 HETATM 2 O O1 EDO . . . J 3 31 110.658 104.512 1 77.72 ? O1 EDO 308 A 1 HETATM 3 C C2 EDO . . . J 3 30.718 112.015 102.513 1 87.81 ? C2 EDO 308 A 1 HETATM 4 O O2 EDO . . . J 3 29.729 112.661 101.703 1 81.88 ? O2 EDO 308 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #