data_6ESS # _model_server_result.job_id 1W_CbGdaYrL1Nn-DwjzaEw _model_server_result.datetime_utc '2024-11-24 00:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ess # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 6ESS # _exptl.entry_id 6ESS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 807.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ESS _cell.length_a 58.079 _cell.length_b 58.079 _cell.length_c 185.125 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ESS _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 58.079 58.079 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 58.079 58.079 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C IR IR . A IR 401 1_555 F O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 E IR IR . A IR 403 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'C28 H45 Cl Ir N5 O4 S2 2' _chem_comp.formula_weight 807.488 _chem_comp.id 4IR _chem_comp.mon_nstd_flag . _chem_comp.name {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(4-{[(2-AMINOETHYL)AMINO]SULFONYL}PHENYL)-5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANAMIDE-(1,2,3,4,5,6-ETA)-PENTAMETHYLCYCLOHEXYL-CHLORO-IRIDIUM(III) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 4IR sing 1 n n C1 O1 4IR doub 2 n n C1 N2 4IR sing 3 n n N1 C2 4IR sing 4 n n N1 HN1 4IR sing 5 n n S1 C3 4IR sing 6 n n S1 C5 4IR sing 7 n n C2 C3 4IR sing 8 n n C2 C4 4IR sing 9 n n C2 H2 4IR sing 10 n n N2 C4 4IR sing 11 n n N2 HN2 4IR sing 12 n n O2 C10 4IR doub 13 n n S2 O3 4IR doub 14 n n S2 N4 4IR sing 15 n n S2 O4 4IR doub 16 n n S2 C16 4IR sing 17 n n C3 H3 4IR sing 18 n n C3 H3A 4IR sing 19 n n N3 C10 4IR sing 20 n n N3 C11 4IR sing 21 n n N3 HN3 4IR sing 22 n n C4 C5 4IR sing 23 n n C4 H4 4IR sing 24 n n N4 C27 4IR sing 25 n n N4 HN4 4IR sing 26 n n C5 C6 4IR sing 27 n n C5 H5 4IR sing 28 n n N5 C28 4IR sing 29 n n N5 HN5 4IR sing 30 n n N5 HN5A 4IR sing 31 n n C6 C7 4IR sing 32 n n C6 H6 4IR sing 33 n n C6 H6A 4IR sing 34 n n C7 C8 4IR sing 35 n n C7 H7 4IR sing 36 n n C7 H7A 4IR sing 37 n n C8 C9 4IR sing 38 n n C8 H8 4IR sing 39 n n C8 H8A 4IR sing 40 n n C9 C10 4IR sing 41 n n C9 H9 4IR sing 42 n n C9 H9A 4IR sing 43 n n C11 C12 4IR doub 44 n y C11 C14 4IR sing 45 n y C12 C13 4IR sing 46 n y C12 H12 4IR sing 47 n n C13 C16 4IR doub 48 n y C13 H13 4IR sing 49 n n C14 C15 4IR doub 50 n y C14 H14 4IR sing 51 n n C15 C16 4IR sing 52 n y C15 H15 4IR sing 53 n n C17 C18 4IR sing 54 n n C17 C21 4IR doub 55 n n C17 C22 4IR sing 56 n n C18 C19 4IR sing 57 n n C18 C23 4IR sing 58 n n C18 H18 4IR sing 59 n n C19 C20 4IR sing 60 n n C19 C24 4IR sing 61 n n C19 H19 4IR sing 62 n n C20 C21 4IR sing 63 n n C20 C25 4IR sing 64 n n C20 H20 4IR sing 65 n n C21 C26 4IR sing 66 n n C22 H22 4IR sing 67 n n C22 H22A 4IR sing 68 n n C22 H22B 4IR sing 69 n n C23 H23 4IR sing 70 n n C23 H23A 4IR sing 71 n n C23 H23B 4IR sing 72 n n C24 H24 4IR sing 73 n n C24 H24A 4IR sing 74 n n C24 H24B 4IR sing 75 n n C25 H25 4IR sing 76 n n C25 H25A 4IR sing 77 n n C25 H25B 4IR sing 78 n n C26 H26 4IR sing 79 n n C26 H26A 4IR sing 80 n n C26 H26B 4IR sing 81 n n C27 C28 4IR sing 82 n n C27 H27 4IR sing 83 n n C27 H27A 4IR sing 84 n n C28 H28 4IR sing 85 n n C28 H28A 4IR sing 86 n n IR1 CL1 4IR sing 87 n n IR1 N4 4IR sing 88 n n IR1 N5 4IR sing 89 n n IR1 C21 4IR sing 90 n n IR1 C17 4IR sing 91 n n IR1 C18 4IR sing 92 n n IR1 C19 4IR sing 93 n n IR1 C20 4IR sing 94 n n # _atom_sites.entry_id 6ESS _atom_sites.fract_transf_matrix[1][1] 0.017218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4IR A 1 400 400 4IR 4IR . C 3 IR A 1 401 401 IR IR . D 3 IR A 1 402 402 IR IR . E 3 IR A 1 403 403 IR IR . F 4 HOH A 1 501 12 HOH HOH . F 4 HOH A 2 502 7 HOH HOH . F 4 HOH A 3 503 17 HOH HOH . F 4 HOH A 4 504 16 HOH HOH . F 4 HOH A 5 505 14 HOH HOH . F 4 HOH A 6 506 10 HOH HOH . F 4 HOH A 7 507 4 HOH HOH . F 4 HOH A 8 508 5 HOH HOH . F 4 HOH A 9 509 1 HOH HOH . F 4 HOH A 10 510 3 HOH HOH . F 4 HOH A 11 511 8 HOH HOH . F 4 HOH A 12 512 9 HOH HOH . F 4 HOH A 13 513 11 HOH HOH . F 4 HOH A 14 514 2 HOH HOH . F 4 HOH A 15 515 6 HOH HOH . F 4 HOH A 16 516 18 HOH HOH . F 4 HOH A 17 517 19 HOH HOH . F 4 HOH A 18 518 13 HOH HOH . F 4 HOH A 19 519 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 IR IR1 4IR . . . B 2 29.483 25.885 -16.093 1 92.9 ? IR1 4IR 400 A 1 HETATM 2 C C1 4IR . . . B 2 15.601 29.561 -8.484 1 18.19 ? C1 4IR 400 A 1 HETATM 3 N N1 4IR . . . B 2 16.606 29.676 -7.501 1 19.85 ? N1 4IR 400 A 1 HETATM 4 O O1 4IR . . . B 2 14.265 29.636 -8.142 1 21.43 ? O1 4IR 400 A 1 HETATM 5 S S1 4IR . . . B 2 17.997 26.987 -8.606 1 21.85 ? S1 4IR 400 A 1 HETATM 6 C C2 4IR . . . B 2 17.894 29.638 -8.213 1 18.27 ? C2 4IR 400 A 1 HETATM 7 N N2 4IR . . . B 2 16.087 29.305 -9.812 1 18.61 ? N2 4IR 400 A 1 HETATM 8 O O2 4IR . . . B 2 19.93 26.253 -15.08 1 27.6 ? O2 4IR 400 A 1 HETATM 9 S S2 4IR . . . B 2 26.323 26.159 -15.927 1 50.63 ? S2 4IR 400 A 1 HETATM 10 C C3 4IR . . . B 2 18.609 28.381 -7.716 1 17.82 ? C3 4IR 400 A 1 HETATM 11 N N3 4IR . . . B 2 21.118 24.284 -14.195 1 28.14 ? N3 4IR 400 A 1 HETATM 12 O O3 4IR . . . B 2 26.284 25.993 -17.374 1 41.07 ? O3 4IR 400 A 1 HETATM 13 C C4 4IR . . . B 2 17.557 29.429 -9.692 1 18.39 ? C4 4IR 400 A 1 HETATM 14 N N4 4IR . . . B 2 27.623 25.462 -15.231 1 81.38 ? N4 4IR 400 A 1 HETATM 15 O O4 4IR . . . B 2 26.397 27.556 -15.417 1 43.75 ? O4 4IR 400 A 1 HETATM 16 C C5 4IR . . . B 2 18.194 28.046 -10.012 1 19.56 ? C5 4IR 400 A 1 HETATM 17 N N5 4IR . . . B 2 29.957 26.181 -14.098 1 98.69 ? N5 4IR 400 A 1 HETATM 18 C C6 4IR . . . B 2 17.652 27.398 -11.285 1 19.73 ? C6 4IR 400 A 1 HETATM 19 C C7 4IR . . . B 2 18.287 26.101 -11.725 1 22.42 ? C7 4IR 400 A 1 HETATM 20 C C8 4IR . . . B 2 17.843 25.762 -13.165 1 25.02 ? C8 4IR 400 A 1 HETATM 21 C C9 4IR . . . B 2 18.634 24.579 -13.692 1 24.11 ? C9 4IR 400 A 1 HETATM 22 C C10 4IR . . . B 2 19.927 25.079 -14.337 1 23.13 ? C10 4IR 400 A 1 HETATM 23 C C11 4IR . . . B 2 22.341 24.687 -14.632 1 32.15 ? C11 4IR 400 A 1 HETATM 24 C C12 4IR . . . B 2 22.747 25.987 -14.366 1 31.79 ? C12 4IR 400 A 1 HETATM 25 C C13 4IR . . . B 2 23.975 26.409 -14.823 1 35.2 ? C13 4IR 400 A 1 HETATM 26 C C14 4IR . . . B 2 23.208 23.788 -15.265 1 31.38 ? C14 4IR 400 A 1 HETATM 27 C C15 4IR . . . B 2 24.466 24.228 -15.692 1 33.75 ? C15 4IR 400 A 1 HETATM 28 C C16 4IR . . . B 2 24.864 25.551 -15.477 1 43.34 ? C16 4IR 400 A 1 HETATM 29 C C17 4IR . . . B 2 31.487 26.125 -16.746 1 111.57 ? C17 4IR 400 A 1 HETATM 30 C C18 4IR . . . B 2 31.199 24.666 -16.408 1 112.26 ? C18 4IR 400 A 1 HETATM 31 C C19 4IR . . . B 2 30.05 24.197 -17.287 1 105.18 ? C19 4IR 400 A 1 HETATM 32 C C20 4IR . . . B 2 29.628 25.364 -18.168 1 106 ? C20 4IR 400 A 1 HETATM 33 C C21 4IR . . . B 2 30.508 26.561 -17.833 1 109 ? C21 4IR 400 A 1 HETATM 34 C C22 4IR . . . B 2 32.545 26.987 -16.016 1 103.66 ? C22 4IR 400 A 1 HETATM 35 C C23 4IR . . . B 2 31.91 23.827 -15.324 1 104.04 ? C23 4IR 400 A 1 HETATM 36 C C24 4IR . . . B 2 29.398 22.794 -17.289 1 88.6 ? C24 4IR 400 A 1 HETATM 37 C C25 4IR . . . B 2 28.487 25.355 -19.219 1 87.02 ? C25 4IR 400 A 1 HETATM 38 C C26 4IR . . . B 2 30.41 27.984 -18.439 1 99.4 ? C26 4IR 400 A 1 HETATM 39 C C27 4IR . . . B 2 27.636 25.708 -13.751 1 79.59 ? C27 4IR 400 A 1 HETATM 40 C C28 4IR . . . B 2 28.796 26.599 -13.304 1 77.52 ? C28 4IR 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #