data_6ESU # _model_server_result.job_id YTm1T5z6k8AkSwfZJJEjYQ _model_server_result.datetime_utc '2024-11-24 04:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6esu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 6ESU # _exptl.entry_id 6ESU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.568 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[4-(2-azanylethylsulfamoyl)phenyl]pentanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ESU _cell.length_a 57.801 _cell.length_b 57.801 _cell.length_c 178.273 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ESU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.801 57.801 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.801 57.801 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H27 N5 O4 S2' _chem_comp.formula_weight 441.568 _chem_comp.id 6IR _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[4-(2-azanylethylsulfamoyl)phenyl]pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N5 6IR sing 1 n n C28 C27 6IR sing 2 n n C27 N4 6IR sing 3 n n N4 S2 6IR sing 4 n n O4 S2 6IR doub 5 n n S2 O3 6IR doub 6 n n S2 C16 6IR sing 7 n n C13 C16 6IR doub 8 n y C13 C12 6IR sing 9 n y C16 C15 6IR sing 10 n y C12 C11 6IR doub 11 n y C15 C14 6IR doub 12 n y O2 C10 6IR doub 13 n n C11 C14 6IR sing 14 n y C11 N3 6IR sing 15 n n C10 N3 6IR sing 16 n n C10 C9 6IR sing 17 n n C9 C8 6IR sing 18 n n C8 C7 6IR sing 19 n n C7 C6 6IR sing 20 n n C6 C5 6IR sing 21 n n C5 C4 6IR sing 22 n n C5 S1 6IR sing 23 n n N2 C4 6IR sing 24 n n N2 C1 6IR sing 25 n n C4 C2 6IR sing 26 n n S1 C3 6IR sing 27 n n C1 O1 6IR doub 28 n n C1 N1 6IR sing 29 n n C2 C3 6IR sing 30 n n C2 N1 6IR sing 31 n n N1 H1 6IR sing 32 n n C2 H2 6IR sing 33 n n N2 H3 6IR sing 34 n n C3 H4 6IR sing 35 n n C3 H5 6IR sing 36 n n N3 H6 6IR sing 37 n n C4 H7 6IR sing 38 n n N4 H8 6IR sing 39 n n C5 H9 6IR sing 40 n n N5 H10 6IR sing 41 n n N5 H11 6IR sing 42 n n C6 H13 6IR sing 43 n n C6 H14 6IR sing 44 n n C7 H15 6IR sing 45 n n C7 H16 6IR sing 46 n n C8 H17 6IR sing 47 n n C8 H18 6IR sing 48 n n C9 H19 6IR sing 49 n n C9 H20 6IR sing 50 n n C12 H21 6IR sing 51 n n C13 H22 6IR sing 52 n n C14 H23 6IR sing 53 n n C15 H24 6IR sing 54 n n C27 H25 6IR sing 55 n n C27 H26 6IR sing 56 n n C28 H27 6IR sing 57 n n C28 H28 6IR sing 58 n n # _atom_sites.entry_id 6ESU _atom_sites.fract_transf_matrix[1][1] 0.017301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6IR A 1 400 400 6IR 4IR . C 3 IR A 1 401 401 IR IR . D 3 IR A 1 402 402 IR IR . E 3 IR A 1 403 403 IR IR . F 3 IR A 1 404 404 IR IR . G 4 ACT A 1 405 405 ACT ACT . H 5 SO4 A 1 406 406 SO4 SO4 . I 6 HOH A 1 501 13 HOH HOH . I 6 HOH A 2 502 5 HOH HOH . I 6 HOH A 3 503 15 HOH HOH . I 6 HOH A 4 504 24 HOH HOH . I 6 HOH A 5 505 17 HOH HOH . I 6 HOH A 6 506 21 HOH HOH . I 6 HOH A 7 507 4 HOH HOH . I 6 HOH A 8 508 12 HOH HOH . I 6 HOH A 9 509 14 HOH HOH . I 6 HOH A 10 510 7 HOH HOH . I 6 HOH A 11 511 16 HOH HOH . I 6 HOH A 12 512 8 HOH HOH . I 6 HOH A 13 513 10 HOH HOH . I 6 HOH A 14 514 3 HOH HOH . I 6 HOH A 15 515 30 HOH HOH . I 6 HOH A 16 516 11 HOH HOH . I 6 HOH A 17 517 23 HOH HOH . I 6 HOH A 18 518 18 HOH HOH . I 6 HOH A 19 519 26 HOH HOH . I 6 HOH A 20 520 1 HOH HOH . I 6 HOH A 21 521 19 HOH HOH . I 6 HOH A 22 522 25 HOH HOH . I 6 HOH A 23 523 9 HOH HOH . I 6 HOH A 24 524 20 HOH HOH . I 6 HOH A 25 525 2 HOH HOH . I 6 HOH A 26 526 29 HOH HOH . I 6 HOH A 27 527 6 HOH HOH . I 6 HOH A 28 528 22 HOH HOH . I 6 HOH A 29 529 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6IR . . . B 2 15.274 29.542 -8.214 1 34.82 ? C1 6IR 400 A 1 HETATM 2 N N1 6IR . . . B 2 16.343 29.763 -7.24 1 30.93 ? N1 6IR 400 A 1 HETATM 3 O O1 6IR . . . B 2 13.957 29.583 -7.871 1 36.01 ? O1 6IR 400 A 1 HETATM 4 S S1 6IR . . . B 2 17.754 26.953 -8.514 1 36.26 ? S1 6IR 400 A 1 HETATM 5 C C2 6IR . . . B 2 17.644 29.629 -7.963 1 32.73 ? C2 6IR 400 A 1 HETATM 6 N N2 6IR . . . B 2 15.721 29.371 -9.556 1 31.47 ? N2 6IR 400 A 1 HETATM 7 O O2 6IR . . . B 2 19.435 26.33 -14.873 1 38.46 ? O2 6IR 400 A 1 HETATM 8 S S2 6IR . . . B 2 25.687 26.059 -16.89 1 64.76 ? S2 6IR 400 A 1 HETATM 9 C C3 6IR . . . B 2 18.399 28.332 -7.475 1 31.54 ? C3 6IR 400 A 1 HETATM 10 N N3 6IR . . . B 2 20.64 24.384 -14.262 1 38.41 ? N3 6IR 400 A 1 HETATM 11 O O3 6IR . . . B 2 26.232 27.177 -16.189 1 65.72 ? O3 6IR 400 A 1 HETATM 12 C C4 6IR . . . B 2 17.21 29.437 -9.491 1 31.92 ? C4 6IR 400 A 1 HETATM 13 N N4 6IR . . . B 2 25.223 26.649 -18.351 1 70.98 ? N4 6IR 400 A 1 HETATM 14 O O4 6IR . . . B 2 26.571 24.935 -17.041 1 69.74 ? O4 6IR 400 A 1 HETATM 15 C C5 6IR . . . B 2 17.917 28.086 -9.905 1 34.05 ? C5 6IR 400 A 1 HETATM 16 N N5 6IR . . . B 2 26.881 25.719 -20.066 1 84.59 ? N5 6IR 400 A 1 HETATM 17 C C6 6IR . . . B 2 17.224 27.318 -11.092 1 30.96 ? C6 6IR 400 A 1 HETATM 18 C C7 6IR . . . B 2 18.167 26.384 -11.818 1 32.75 ? C7 6IR 400 A 1 HETATM 19 C C8 6IR . . . B 2 17.317 25.62 -12.911 1 34.07 ? C8 6IR 400 A 1 HETATM 20 C C9 6IR . . . B 2 18.147 24.609 -13.713 1 34.86 ? C9 6IR 400 A 1 HETATM 21 C C10 6IR . . . B 2 19.418 25.089 -14.314 1 33.38 ? C10 6IR 400 A 1 HETATM 22 C C11 6IR . . . B 2 21.835 24.84 -14.819 1 43.25 ? C11 6IR 400 A 1 HETATM 23 C C12 6IR . . . B 2 22.596 23.919 -15.599 1 52.03 ? C12 6IR 400 A 1 HETATM 24 C C13 6IR . . . B 2 23.821 24.279 -16.175 1 51.28 ? C13 6IR 400 A 1 HETATM 25 C C14 6IR . . . B 2 22.346 26.134 -14.699 1 53.65 ? C14 6IR 400 A 1 HETATM 26 C C15 6IR . . . B 2 23.551 26.499 -15.346 1 53.91 ? C15 6IR 400 A 1 HETATM 27 C C16 6IR . . . B 2 24.312 25.584 -16.088 1 57.12 ? C16 6IR 400 A 1 HETATM 28 C C27 6IR . . . B 2 24.607 25.649 -19.27 1 80.56 ? C27 6IR 400 A 1 HETATM 29 C C28 6IR . . . B 2 25.626 24.961 -20.172 1 81.99 ? C28 6IR 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #