data_6ESY # _model_server_result.job_id ALIeMzzM7fR34lEWcV3hxA _model_server_result.datetime_utc '2024-11-28 21:51:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6esy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":612}' # _entry.id 6ESY # _exptl.entry_id 6ESY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.411 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ESY _cell.length_a 74.27 _cell.length_b 79.25 _cell.length_c 228.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ESY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 S N N ? 6 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 610 NAG 2 n C NAG 2 C 2 NAG A 611 NAG 2 n C FUC 3 C 3 FUC A 612 FUC 3 n D NAG 1 D 1 NAG A 620 NAG 3 n D NAG 2 D 2 NAG A 621 NAG 3 n E NAG 1 E 1 NAG A 640 NAG 3 n E NAG 2 E 2 NAG A 641 NAG 4 n F NAG 1 F 1 NAG A 650 NAG 4 n F FUC 2 F 2 FUC A 651 FUC 3 n G NAG 1 G 1 NAG B 620 NAG 3 n G NAG 2 G 2 NAG B 621 NAG 2 n H NAG 1 H 1 NAG B 660 NAG 2 n H NAG 2 H 2 NAG B 661 NAG 2 n H FUC 3 H 3 FUC B 662 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 65 B CYS 65 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 252 B CYS 252 1_555 B SG CYS 263 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 400 B CYS 400 1_555 B SG CYS 519 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 I C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 57 A ASN 57 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 106 A ASN 106 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 A ND2 ASN 341 A ASN 341 1_555 J C1 NAG . A NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 481 A ASN 481 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 A ND2 ASN 486 A ASN 486 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale7 B ND2 ASN 57 B ASN 57 1_555 N C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale8 B ND2 ASN 106 B ASN 106 1_555 O C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.229 ? covale ? covale9 B ND2 ASN 241 B ASN 241 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 B ND2 ASN 256 B ASN 256 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 B ND2 ASN 341 B ASN 341 1_555 P C1 NAG . B NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale12 B ND2 ASN 455 B ASN 455 1_555 Q C1 NAG . B NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale13 B ND2 ASN 481 B ASN 481 1_555 R C1 NAG . B NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale16 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale20 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C17 H19 N2 S 1' _chem_comp.formula_weight 283.411 _chem_comp.id TFX _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Thioflavin T' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8 TFX doub 343 n y N1 C9 TFX sing 344 n y N1 C17 TFX sing 345 n n S1 C8 TFX sing 346 n y S1 C10 TFX sing 347 n y C2 N2 TFX sing 348 n n C2 C3 TFX doub 349 n y C2 C7 TFX sing 350 n y N2 C15 TFX sing 351 n n N2 C16 TFX sing 352 n n C3 C4 TFX sing 353 n y C4 C5 TFX doub 354 n y C5 C6 TFX sing 355 n y C5 C8 TFX sing 356 n y C6 C7 TFX doub 357 n y C9 C10 TFX doub 358 n y C9 C14 TFX sing 359 n y C10 C11 TFX sing 360 n y C11 C12 TFX doub 361 n y C12 C13 TFX sing 362 n y C12 C18 TFX sing 363 n n C13 C14 TFX doub 364 n y C3 H3 TFX sing 365 n n C4 H4 TFX sing 366 n n C6 H6 TFX sing 367 n n C7 H7 TFX sing 368 n n C11 H11 TFX sing 369 n n C13 H13 TFX sing 370 n n C14 H14 TFX sing 371 n n C15 H15 TFX sing 372 n n C15 H15A TFX sing 373 n n C15 H15B TFX sing 374 n n C16 H16 TFX sing 375 n n C16 H16A TFX sing 376 n n C16 H16B TFX sing 377 n n C17 H17 TFX sing 378 n n C17 H17A TFX sing 379 n n C17 H17B TFX sing 380 n n C18 H18 TFX sing 381 n n C18 H18A TFX sing 382 n n C18 H18B TFX sing 383 n n # _atom_sites.entry_id 6ESY _atom_sites.fract_transf_matrix[1][1] 0.013464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG A 1 601 600 NAG NAG . J 5 NAG A 1 607 630 NAG NAG . K 6 TFX A 1 612 1 TFX TFX . L 6 TFX A 1 613 2 TFX TFX . M 7 CL A 1 614 1 CL CL . N 5 NAG B 1 601 600 NAG NAG . O 5 NAG B 1 602 610 NAG NAG . P 5 NAG B 1 605 630 NAG NAG . Q 5 NAG B 1 606 640 NAG NAG . R 5 NAG B 1 607 650 NAG NAG . S 6 TFX B 1 611 3 TFX TFX . T 6 TFX B 1 612 4 TFX TFX . U 7 CL B 1 613 2 CL CL . V 8 HOH A 1 701 23 HOH HOH . V 8 HOH A 2 702 21 HOH HOH . V 8 HOH A 3 703 24 HOH HOH . V 8 HOH A 4 704 22 HOH HOH . V 8 HOH A 5 705 26 HOH HOH . V 8 HOH A 6 706 25 HOH HOH . V 8 HOH A 7 707 4 HOH HOH . V 8 HOH A 8 708 38 HOH HOH . V 8 HOH A 9 709 5 HOH HOH . V 8 HOH A 10 710 2 HOH HOH . V 8 HOH A 11 711 1 HOH HOH . V 8 HOH A 12 712 6 HOH HOH . V 8 HOH A 13 713 3 HOH HOH . V 8 HOH A 14 714 20 HOH HOH . V 8 HOH A 15 715 19 HOH HOH . V 8 HOH A 16 716 8 HOH HOH . V 8 HOH A 17 717 7 HOH HOH . W 8 HOH B 1 701 14 HOH HOH . W 8 HOH B 2 702 17 HOH HOH . W 8 HOH B 3 703 40 HOH HOH . W 8 HOH B 4 704 36 HOH HOH . W 8 HOH B 5 705 37 HOH HOH . W 8 HOH B 6 706 13 HOH HOH . W 8 HOH B 7 707 39 HOH HOH . W 8 HOH B 8 708 18 HOH HOH . W 8 HOH B 9 709 34 HOH HOH . W 8 HOH B 10 710 35 HOH HOH . W 8 HOH B 11 711 32 HOH HOH . W 8 HOH B 12 712 15 HOH HOH . W 8 HOH B 13 713 41 HOH HOH . W 8 HOH B 14 714 10 HOH HOH . W 8 HOH B 15 715 9 HOH HOH . W 8 HOH B 16 716 33 HOH HOH . W 8 HOH B 17 717 12 HOH HOH . W 8 HOH B 18 718 16 HOH HOH . W 8 HOH B 19 719 28 HOH HOH . W 8 HOH B 20 720 29 HOH HOH . W 8 HOH B 21 721 30 HOH HOH . W 8 HOH B 22 722 11 HOH HOH . W 8 HOH B 23 723 27 HOH HOH . W 8 HOH B 24 724 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TFX . . . K 6 3.803 -12.237 -10.921 1 145.5 ? N1 TFX 612 A 1 HETATM 2 S S1 TFX . . . K 6 4.192 -14.07 -12.421 1 155.56 ? S1 TFX 612 A 1 HETATM 3 C C2 TFX . . . K 6 2.205 -11.666 -16.078 1 100.9 ? C2 TFX 612 A 1 HETATM 4 N N2 TFX . . . K 6 1.709 -11.273 -17.385 1 79.18 ? N2 TFX 612 A 1 HETATM 5 C C3 TFX . . . K 6 2.334 -10.707 -15.092 1 113.95 ? C3 TFX 612 A 1 HETATM 6 C C4 TFX . . . K 6 2.797 -11.067 -13.841 1 119.22 ? C4 TFX 612 A 1 HETATM 7 C C5 TFX . . . K 6 3.151 -12.374 -13.55 1 127 ? C5 TFX 612 A 1 HETATM 8 C C6 TFX . . . K 6 3.015 -13.337 -14.543 1 118.97 ? C6 TFX 612 A 1 HETATM 9 C C7 TFX . . . K 6 2.546 -12.984 -15.802 1 108.94 ? C7 TFX 612 A 1 HETATM 10 C C8 TFX . . . K 6 3.613 -12.651 -12.259 1 142.19 ? C8 TFX 612 A 1 HETATM 11 C C9 TFX . . . K 6 4.518 -13.395 -10.134 1 152.6 ? C9 TFX 612 A 1 HETATM 12 C C10 TFX . . . K 6 4.741 -14.473 -11.037 1 156.49 ? C10 TFX 612 A 1 HETATM 13 C C11 TFX . . . K 6 5.367 -15.622 -10.57 1 160.37 ? C11 TFX 612 A 1 HETATM 14 C C12 TFX . . . K 6 5.766 -15.707 -9.23 1 164.2 ? C12 TFX 612 A 1 HETATM 15 C C13 TFX . . . K 6 5.541 -14.635 -8.345 1 160.08 ? C13 TFX 612 A 1 HETATM 16 C C14 TFX . . . K 6 4.914 -13.48 -8.808 1 155.73 ? C14 TFX 612 A 1 HETATM 17 C C15 TFX . . . K 6 1.408 -9.878 -17.648 1 76.2 ? C15 TFX 612 A 1 HETATM 18 C C16 TFX . . . K 6 1.507 -12.262 -18.427 1 77.64 ? C16 TFX 612 A 1 HETATM 19 C C17 TFX . . . K 6 3.418 -10.98 -10.317 1 147.08 ? C17 TFX 612 A 1 HETATM 20 C C18 TFX . . . K 6 6.45 -16.978 -8.725 1 168.41 ? C18 TFX 612 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #