data_6ET5 # _model_server_result.job_id 6jWGG_s0Q_famL-3nASchQ _model_server_result.datetime_utc '2025-03-04 09:10:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6et5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JB","auth_seq_id":304}' # _entry.id 6ET5 # _exptl.entry_id 6ET5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.226 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ubiquinone-9 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ET5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ET5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 54-meric _pdbx_struct_assembly.oligomeric_count 54 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 JB N N ? 11 RC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 74 C MET 74 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 B NE2 HIS 191 L HIS 190 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 B NE2 HIS 231 L HIS 230 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 C NE2 HIS 217 M HIS 217 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 C OE1 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc13 C OE2 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 C NE2 HIS 264 M HIS 264 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? covale ? covale1 D C FME 1 H FME 1 1_555 D N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 F CG2 ILE 22 1 ILE 21 1_555 BC C8 NS0 . 1 NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? covale ? covale3 DA CG2 ILE 22 c ILE 21 1_555 GD C8 NS0 . c NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale4 HA CD1 ILE 22 o ILE 21 1_555 OD C8 NS0 . o NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? # _chem_comp.formula 'C54 H82 O4' _chem_comp.formula_weight 795.226 _chem_comp.id UQ9 _chem_comp.mon_nstd_flag . _chem_comp.name Ubiquinone-9 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,3-dimethoxy-5-methyl-6-[(2E,6E,10E,14Z,18E,22E,26E,30Z)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaen-1-yl]cyclohexa-2,5-diene-1,4-dione # _atom_sites.entry_id 6ET5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CB 8 HEM C 1 401 609 HEM HEM . DB 8 HEM C 1 402 610 HEM HEM . EB 8 HEM C 1 403 611 HEM HEM . FB 8 HEM C 1 404 612 HEM HEM . GB 9 BCB L 1 301 602 BCB BCB . HB 9 BCB L 1 302 604 BCB BCB . IB 10 BPB L 1 303 606 BPB BPB . JB 11 UQ9 L 1 304 1 UQ9 UQ9 . KB 12 FE L 1 305 607 FE FE . LB 13 SO4 M 1 401 618 SO4 SO4 . MB 13 SO4 M 1 402 619 SO4 SO4 . NB 13 SO4 M 1 403 620 SO4 SO4 . OB 13 SO4 M 1 404 621 SO4 SO4 . PB 9 BCB M 1 405 601 BCB BCB . QB 9 BCB M 1 406 603 BCB BCB . RB 10 BPB M 1 407 605 BPB BPB . SB 14 LDA M 1 408 616 LDA LDA . TB 15 MQ9 M 1 409 1 MQ9 MQ9 . UB 16 NS5 M 1 410 1 NS5 NS5 . VB 14 LDA H 1 301 615 LDA LDA . WB 13 SO4 H 1 302 617 SO4 SO4 . XB 13 SO4 H 1 303 622 SO4 SO4 . YB 13 SO4 H 1 304 623 SO4 SO4 . ZB 9 BCB z 1 101 30 BCB BCB . AC 9 BCB 1 1 101 29 BCB BCB . BC 17 NS0 1 1 102 1 NS0 NS0 . CC 9 BCB F 1 101 2 BCB BCB . DC 9 BCB K 1 101 4 BCB BCB . EC 9 BCB P 1 101 6 BCB BCB . FC 9 BCB S 1 101 8 BCB BCB . GC 9 BCB V 1 101 10 BCB BCB . HC 9 BCB Y 1 101 12 BCB BCB . IC 9 BCB b 1 101 14 BCB BCB . JC 9 BCB e 1 101 16 BCB BCB . KC 9 BCB h 1 101 18 BCB BCB . LC 9 BCB k 1 101 20 BCB BCB . MC 9 BCB n 1 101 22 BCB BCB . NC 9 BCB q 1 101 24 BCB BCB . OC 9 BCB t 1 101 26 BCB BCB . PC 9 BCB w 1 101 28 BCB BCB . QC 9 BCB 3 1 101 32 BCB BCB . RC 11 UQ9 6 1 101 2 UQ9 UQ9 . SC 9 BCB 6 1 102 34 BCB BCB . TC 9 BCB G 1 101 1 BCB BCB . UC 17 NS0 G 1 102 15 NS0 NS0 . VC 9 BCB N 1 101 3 BCB BCB . WC 17 NS0 N 1 102 14 NS0 NS0 . XC 9 BCB Q 1 101 5 BCB BCB . YC 17 NS0 Q 1 102 13 NS0 NS0 . ZC 9 BCB T 1 101 7 BCB BCB . AD 17 NS0 T 1 102 12 NS0 NS0 . BD 9 BCB W 1 101 9 BCB BCB . CD 17 NS0 W 1 102 11 NS0 NS0 . DD 9 BCB Z 1 101 11 BCB BCB . ED 17 NS0 Z 1 102 10 NS0 NS0 . FD 9 BCB c 1 101 13 BCB BCB . GD 17 NS0 c 1 102 9 NS0 NS0 . HD 9 BCB f 1 101 15 BCB BCB . ID 17 NS0 f 1 102 8 NS0 NS0 . JD 9 BCB i 1 101 17 BCB BCB . KD 17 NS0 i 1 102 7 NS0 NS0 . LD 9 BCB l 1 101 19 BCB BCB . MD 17 NS0 l 1 102 6 NS0 NS0 . ND 9 BCB o 1 101 21 BCB BCB . OD 17 NS0 o 1 102 5 NS0 NS0 . PD 9 BCB r 1 101 23 BCB BCB . QD 17 NS0 r 1 102 4 NS0 NS0 . RD 9 BCB u 1 101 25 BCB BCB . SD 17 NS0 u 1 102 3 NS0 NS0 . TD 9 BCB x 1 101 27 BCB BCB . UD 17 NS0 x 1 102 2 NS0 NS0 . VD 9 BCB 4 1 101 31 BCB BCB . WD 17 NS0 4 1 102 17 NS0 NS0 . XD 9 BCB 7 1 101 33 BCB BCB . YD 17 NS0 7 1 102 16 NS0 NS0 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C51 UQ9 . . . JB 11 113.723 131.641 103.203 1 20 ? C51 UQ9 304 L 1 HETATM 2 C C49 UQ9 . . . JB 11 114.633 130.802 104.099 1 20 ? C49 UQ9 304 L 1 HETATM 3 C C50 UQ9 . . . JB 11 114.688 129.285 103.917 1 20 ? C50 UQ9 304 L 1 HETATM 4 C C48 UQ9 . . . JB 11 115.48 131.482 105.182 1 20 ? C48 UQ9 304 L 1 HETATM 5 C C47 UQ9 . . . JB 11 116.35 130.541 106.019 1 20 ? C47 UQ9 304 L 1 HETATM 6 C C46 UQ9 . . . JB 11 115.753 130.384 107.419 1 20 ? C46 UQ9 304 L 1 HETATM 7 C C44 UQ9 . . . JB 11 116.331 131.456 108.346 1 20 ? C44 UQ9 304 L 1 HETATM 8 C C45 UQ9 . . . JB 11 115.631 132.811 108.482 1 20 ? C45 UQ9 304 L 1 HETATM 9 C C43 UQ9 . . . JB 11 117.607 131.181 109.136 1 20 ? C43 UQ9 304 L 1 HETATM 10 C C42 UQ9 . . . JB 11 118.067 132.342 110.014 1 20 ? C42 UQ9 304 L 1 HETATM 11 C C41 UQ9 . . . JB 11 119.585 132.288 110.175 1 20 ? C41 UQ9 304 L 1 HETATM 12 C C39 UQ9 . . . JB 11 119.951 132.675 111.604 1 20 ? C39 UQ9 304 L 1 HETATM 13 C C40 UQ9 . . . JB 11 121.42 132.767 112.015 1 20 ? C40 UQ9 304 L 1 HETATM 14 C C38 UQ9 . . . JB 11 118.843 132.978 112.614 1 20 ? C38 UQ9 304 L 1 HETATM 15 C C37 UQ9 . . . JB 11 119.309 133.364 114.017 1 20 ? C37 UQ9 304 L 1 HETATM 16 C C36 UQ9 . . . JB 11 118.12 133.923 114.79 1 20 ? C36 UQ9 304 L 1 HETATM 17 C C34 UQ9 . . . JB 11 118.515 134.231 116.234 1 20 ? C34 UQ9 304 L 1 HETATM 18 C C35 UQ9 . . . JB 11 117.448 134.709 117.226 1 20 ? C35 UQ9 304 L 1 HETATM 19 C C33 UQ9 . . . JB 11 119.964 134.065 116.695 1 20 ? C33 UQ9 304 L 1 HETATM 20 C C32 UQ9 . . . JB 11 120.213 134.406 118.167 1 20 ? C32 UQ9 304 L 1 HETATM 21 C C31 UQ9 . . . JB 11 119.304 133.55 119.06 1 20 ? C31 UQ9 304 L 1 HETATM 22 C C29 UQ9 . . . JB 11 119.563 133.888 120.529 1 20 ? C29 UQ9 304 L 1 HETATM 23 C C30 UQ9 . . . JB 11 120.68 134.869 120.889 1 20 ? C30 UQ9 304 L 1 HETATM 24 C C28 UQ9 . . . JB 11 118.712 133.258 121.639 1 20 ? C28 UQ9 304 L 1 HETATM 25 C C27 UQ9 . . . JB 11 117.616 132.298 121.177 1 20 ? C27 UQ9 304 L 1 HETATM 26 C C26 UQ9 . . . JB 11 116.372 132.484 122.049 1 20 ? C26 UQ9 304 L 1 HETATM 27 C C24 UQ9 . . . JB 11 115.245 131.567 121.563 1 20 ? C24 UQ9 304 L 1 HETATM 28 C C25 UQ9 . . . JB 11 115.124 130.151 122.105 1 20 ? C25 UQ9 304 L 1 HETATM 29 C C23 UQ9 . . . JB 11 114.221 132.062 120.541 1 20 ? C23 UQ9 304 L 1 HETATM 30 C C22 UQ9 . . . JB 11 113.162 131.029 120.158 1 20 ? C22 UQ9 304 L 1 HETATM 31 C C21 UQ9 . . . JB 11 111.902 131.718 119.635 1 20 ? C21 UQ9 304 L 1 HETATM 32 C C19 UQ9 . . . JB 11 110.763 131.471 120.619 1 20 ? C19 UQ9 304 L 1 HETATM 33 C C20 UQ9 . . . JB 11 110.843 132.06 122.026 1 20 ? C20 UQ9 304 L 1 HETATM 34 C C18 UQ9 . . . JB 11 109.558 130.625 120.206 1 20 ? C18 UQ9 304 L 1 HETATM 35 C C17 UQ9 . . . JB 11 108.49 130.447 121.287 1 20 ? C17 UQ9 304 L 1 HETATM 36 C C16 UQ9 . . . JB 11 107.213 129.866 120.678 1 20 ? C16 UQ9 304 L 1 HETATM 37 C C14 UQ9 . . . JB 11 106.808 128.619 121.46 1 20 ? C14 UQ9 304 L 1 HETATM 38 C C15 UQ9 . . . JB 11 107.876 127.809 122.183 1 20 ? C15 UQ9 304 L 1 HETATM 39 C C13 UQ9 . . . JB 11 105.341 128.186 121.541 1 20 ? C13 UQ9 304 L 1 HETATM 40 C C12 UQ9 . . . JB 11 104.338 129.064 120.796 1 20 ? C12 UQ9 304 L 1 HETATM 41 C C11 UQ9 . . . JB 11 103.314 128.167 120.106 1 20 ? C11 UQ9 304 L 1 HETATM 42 C C9 UQ9 . . . JB 11 101.968 128.288 120.814 1 20 ? C9 UQ9 304 L 1 HETATM 43 C C10 UQ9 . . . JB 11 101.681 129.515 121.671 1 20 ? C10 UQ9 304 L 1 HETATM 44 C C8 UQ9 . . . JB 11 100.92 127.182 120.672 1 20 ? C8 UQ9 304 L 1 HETATM 45 C C7 UQ9 . . . JB 11 101.357 126.023 119.779 1 20 ? C7 UQ9 304 L 1 HETATM 46 C C6 UQ9 . . . JB 11 100.355 125.506 118.945 1 20 ? C6 UQ9 304 L 1 HETATM 47 C C1 UQ9 . . . JB 11 100.394 124.137 118.678 1 20 ? C1 UQ9 304 L 1 HETATM 48 C C1M UQ9 . . . JB 11 101.372 123.372 119.289 1 20 ? C1M UQ9 304 L 1 HETATM 49 C C2 UQ9 . . . JB 11 99.474 123.466 117.866 1 20 ? C2 UQ9 304 L 1 HETATM 50 O O2 UQ9 . . . JB 11 100.149 122.72 116.855 1 20 ? O2 UQ9 304 L 1 HETATM 51 C C3 UQ9 . . . JB 11 98.549 124.307 117.273 1 20 ? C3 UQ9 304 L 1 HETATM 52 O O3 UQ9 . . . JB 11 97.62 123.73 116.464 1 20 ? O3 UQ9 304 L 1 HETATM 53 C C3M UQ9 . . . JB 11 97.647 124.319 115.164 1 20 ? C3M UQ9 304 L 1 HETATM 54 C C4 UQ9 . . . JB 11 98.483 125.668 117.506 1 20 ? C4 UQ9 304 L 1 HETATM 55 O O4 UQ9 . . . JB 11 97.506 126.391 116.893 1 20 ? O4 UQ9 304 L 1 HETATM 56 C C4M UQ9 . . . JB 11 96.228 125.897 117.285 1 20 ? C4M UQ9 304 L 1 HETATM 57 C C5 UQ9 . . . JB 11 99.389 126.302 118.335 1 20 ? C5 UQ9 304 L 1 HETATM 58 O O5 UQ9 . . . JB 11 99.327 127.512 118.524 1 20 ? O5 UQ9 304 L 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 58 #