data_6ET5 # _model_server_result.job_id -wFLve0lMzKxOQ1zJsZyDQ _model_server_result.datetime_utc '2025-03-04 08:38:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6et5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":402}' # _entry.id 6ET5 # _exptl.entry_id 6ET5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ET5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ET5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 54-meric _pdbx_struct_assembly.oligomeric_count 54 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 CB N N ? 8 DB N N ? 8 EB N N ? 8 FB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 74 C MET 74 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 B NE2 HIS 191 L HIS 190 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 B NE2 HIS 231 L HIS 230 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 C NE2 HIS 217 M HIS 217 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 C OE1 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc13 C OE2 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 C NE2 HIS 264 M HIS 264 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? covale ? covale1 D C FME 1 H FME 1 1_555 D N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 F CG2 ILE 22 1 ILE 21 1_555 BC C8 NS0 . 1 NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? covale ? covale3 DA CG2 ILE 22 c ILE 21 1_555 GD C8 NS0 . c NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale4 HA CD1 ILE 22 o ILE 21 1_555 OD C8 NS0 . o NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 6ET5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CB 8 HEM C 1 401 609 HEM HEM . DB 8 HEM C 1 402 610 HEM HEM . EB 8 HEM C 1 403 611 HEM HEM . FB 8 HEM C 1 404 612 HEM HEM . GB 9 BCB L 1 301 602 BCB BCB . HB 9 BCB L 1 302 604 BCB BCB . IB 10 BPB L 1 303 606 BPB BPB . JB 11 UQ9 L 1 304 1 UQ9 UQ9 . KB 12 FE L 1 305 607 FE FE . LB 13 SO4 M 1 401 618 SO4 SO4 . MB 13 SO4 M 1 402 619 SO4 SO4 . NB 13 SO4 M 1 403 620 SO4 SO4 . OB 13 SO4 M 1 404 621 SO4 SO4 . PB 9 BCB M 1 405 601 BCB BCB . QB 9 BCB M 1 406 603 BCB BCB . RB 10 BPB M 1 407 605 BPB BPB . SB 14 LDA M 1 408 616 LDA LDA . TB 15 MQ9 M 1 409 1 MQ9 MQ9 . UB 16 NS5 M 1 410 1 NS5 NS5 . VB 14 LDA H 1 301 615 LDA LDA . WB 13 SO4 H 1 302 617 SO4 SO4 . XB 13 SO4 H 1 303 622 SO4 SO4 . YB 13 SO4 H 1 304 623 SO4 SO4 . ZB 9 BCB z 1 101 30 BCB BCB . AC 9 BCB 1 1 101 29 BCB BCB . BC 17 NS0 1 1 102 1 NS0 NS0 . CC 9 BCB F 1 101 2 BCB BCB . DC 9 BCB K 1 101 4 BCB BCB . EC 9 BCB P 1 101 6 BCB BCB . FC 9 BCB S 1 101 8 BCB BCB . GC 9 BCB V 1 101 10 BCB BCB . HC 9 BCB Y 1 101 12 BCB BCB . IC 9 BCB b 1 101 14 BCB BCB . JC 9 BCB e 1 101 16 BCB BCB . KC 9 BCB h 1 101 18 BCB BCB . LC 9 BCB k 1 101 20 BCB BCB . MC 9 BCB n 1 101 22 BCB BCB . NC 9 BCB q 1 101 24 BCB BCB . OC 9 BCB t 1 101 26 BCB BCB . PC 9 BCB w 1 101 28 BCB BCB . QC 9 BCB 3 1 101 32 BCB BCB . RC 11 UQ9 6 1 101 2 UQ9 UQ9 . SC 9 BCB 6 1 102 34 BCB BCB . TC 9 BCB G 1 101 1 BCB BCB . UC 17 NS0 G 1 102 15 NS0 NS0 . VC 9 BCB N 1 101 3 BCB BCB . WC 17 NS0 N 1 102 14 NS0 NS0 . XC 9 BCB Q 1 101 5 BCB BCB . YC 17 NS0 Q 1 102 13 NS0 NS0 . ZC 9 BCB T 1 101 7 BCB BCB . AD 17 NS0 T 1 102 12 NS0 NS0 . BD 9 BCB W 1 101 9 BCB BCB . CD 17 NS0 W 1 102 11 NS0 NS0 . DD 9 BCB Z 1 101 11 BCB BCB . ED 17 NS0 Z 1 102 10 NS0 NS0 . FD 9 BCB c 1 101 13 BCB BCB . GD 17 NS0 c 1 102 9 NS0 NS0 . HD 9 BCB f 1 101 15 BCB BCB . ID 17 NS0 f 1 102 8 NS0 NS0 . JD 9 BCB i 1 101 17 BCB BCB . KD 17 NS0 i 1 102 7 NS0 NS0 . LD 9 BCB l 1 101 19 BCB BCB . MD 17 NS0 l 1 102 6 NS0 NS0 . ND 9 BCB o 1 101 21 BCB BCB . OD 17 NS0 o 1 102 5 NS0 NS0 . PD 9 BCB r 1 101 23 BCB BCB . QD 17 NS0 r 1 102 4 NS0 NS0 . RD 9 BCB u 1 101 25 BCB BCB . SD 17 NS0 u 1 102 3 NS0 NS0 . TD 9 BCB x 1 101 27 BCB BCB . UD 17 NS0 x 1 102 2 NS0 NS0 . VD 9 BCB 4 1 101 31 BCB BCB . WD 17 NS0 4 1 102 17 NS0 NS0 . XD 9 BCB 7 1 101 33 BCB BCB . YD 17 NS0 7 1 102 16 NS0 NS0 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . DB 8 159.53 140.403 149.245 1 89.91 ? CHA HEM 402 C 1 HETATM 2 C CHB HEM . . . DB 8 164.149 140.177 147.955 1 93.22 ? CHB HEM 402 C 1 HETATM 3 C CHC HEM . . . DB 8 163.324 135.948 145.761 1 91.91 ? CHC HEM 402 C 1 HETATM 4 C CHD HEM . . . DB 8 158.627 136.675 146.394 1 88.14 ? CHD HEM 402 C 1 HETATM 5 C C1A HEM . . . DB 8 160.838 140.702 149.076 1 95.21 ? C1A HEM 402 C 1 HETATM 6 C C2A HEM . . . DB 8 161.464 141.858 149.589 1 102.85 ? C2A HEM 402 C 1 HETATM 7 C C3A HEM . . . DB 8 162.772 141.79 149.234 1 106.8 ? C3A HEM 402 C 1 HETATM 8 C C4A HEM . . . DB 8 162.953 140.599 148.499 1 100.14 ? C4A HEM 402 C 1 HETATM 9 C CMA HEM . . . DB 8 163.845 142.806 149.577 1 109.64 ? CMA HEM 402 C 1 HETATM 10 C CAA HEM . . . DB 8 160.838 142.961 150.414 1 98.87 ? CAA HEM 402 C 1 HETATM 11 C CBA HEM . . . DB 8 160.718 144.229 149.567 1 104.95 ? CBA HEM 402 C 1 HETATM 12 C CGA HEM . . . DB 8 159.613 145.169 150.008 1 110.61 ? CGA HEM 402 C 1 HETATM 13 O O1A HEM . . . DB 8 159.665 146.378 149.695 1 119 ? O1A HEM 402 C 1 HETATM 14 O O2A HEM . . . DB 8 158.628 144.784 150.672 1 111.04 ? O2A HEM 402 C 1 HETATM 15 C C1B HEM . . . DB 8 164.337 138.957 147.302 1 93.49 ? C1B HEM 402 C 1 HETATM 16 C C2B HEM . . . DB 8 165.611 138.457 146.904 1 99.75 ? C2B HEM 402 C 1 HETATM 17 C C3B HEM . . . DB 8 165.411 137.261 146.28 1 93.9 ? C3B HEM 402 C 1 HETATM 18 C C4B HEM . . . DB 8 163.947 137.058 146.305 1 87.8 ? C4B HEM 402 C 1 HETATM 19 C CMB HEM . . . DB 8 166.953 139.121 147.109 1 104.07 ? CMB HEM 402 C 1 HETATM 20 C CAB HEM . . . DB 8 166.46 136.369 145.713 1 82.33 ? CAB HEM 402 C 1 HETATM 21 C CBB HEM . . . DB 8 167.551 135.986 146.408 1 75.58 ? CBB HEM 402 C 1 HETATM 22 C C1C HEM . . . DB 8 161.938 135.782 145.712 1 94.67 ? C1C HEM 402 C 1 HETATM 23 C C2C HEM . . . DB 8 161.231 134.731 145.091 1 91.26 ? C2C HEM 402 C 1 HETATM 24 C C3C HEM . . . DB 8 159.89 134.945 145.285 1 85.91 ? C3C HEM 402 C 1 HETATM 25 C C4C HEM . . . DB 8 159.791 136.137 146.008 1 87.71 ? C4C HEM 402 C 1 HETATM 26 C CMC HEM . . . DB 8 161.808 133.557 144.356 1 86.63 ? CMC HEM 402 C 1 HETATM 27 C CAC HEM . . . DB 8 158.767 134.106 144.847 1 79.39 ? CAC HEM 402 C 1 HETATM 28 C CBC HEM . . . DB 8 158.908 132.792 144.753 1 78.91 ? CBC HEM 402 C 1 HETATM 29 C C1D HEM . . . DB 8 158.574 137.72 147.285 1 88.85 ? C1D HEM 402 C 1 HETATM 30 C C2D HEM . . . DB 8 157.282 138.102 147.818 1 96.15 ? C2D HEM 402 C 1 HETATM 31 C C3D HEM . . . DB 8 157.496 139.139 148.619 1 101.57 ? C3D HEM 402 C 1 HETATM 32 C C4D HEM . . . DB 8 158.948 139.384 148.558 1 91.31 ? C4D HEM 402 C 1 HETATM 33 C CMD HEM . . . DB 8 155.947 137.461 147.529 1 99.86 ? CMD HEM 402 C 1 HETATM 34 C CAD HEM . . . DB 8 156.381 139.8 149.393 1 102.92 ? CAD HEM 402 C 1 HETATM 35 C CBD HEM . . . DB 8 156 141.1 148.745 1 122.82 ? CBD HEM 402 C 1 HETATM 36 C CGD HEM . . . DB 8 156.691 142.146 149.563 1 137.45 ? CGD HEM 402 C 1 HETATM 37 O O1D HEM . . . DB 8 157.129 141.873 150.71 1 135.45 ? O1D HEM 402 C 1 HETATM 38 O O2D HEM . . . DB 8 156.824 143.292 149.084 1 149.78 ? O2D HEM 402 C 1 HETATM 39 N NA HEM . . . DB 8 161.75 139.985 148.363 1 93.89 ? NA HEM 402 C 1 HETATM 40 N NB HEM . . . DB 8 163.401 138.117 146.906 1 86.67 ? NB HEM 402 C 1 HETATM 41 N NC HEM . . . DB 8 161.024 136.637 146.223 1 87.93 ? NC HEM 402 C 1 HETATM 42 N ND HEM . . . DB 8 159.542 138.528 147.717 1 91.35 ? ND HEM 402 C 1 HETATM 43 FE FE HEM . . . DB 8 161.377 138.343 147.333 1 87.35 ? FE HEM 402 C 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 548 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 43 #