data_6ET5 # _model_server_result.job_id aGU9nuUsBno1YOSoGEwL1g _model_server_result.datetime_utc '2025-03-04 08:27:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6et5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EB","auth_seq_id":403}' # _entry.id 6ET5 # _exptl.entry_id 6ET5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ET5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ET5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 54-meric _pdbx_struct_assembly.oligomeric_count 54 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 CB N N ? 8 DB N N ? 8 EB N N ? 8 FB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 74 C MET 74 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 B NE2 HIS 191 L HIS 190 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 B NE2 HIS 231 L HIS 230 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 C NE2 HIS 217 M HIS 217 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 C OE1 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc13 C OE2 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 C NE2 HIS 264 M HIS 264 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? covale ? covale1 D C FME 1 H FME 1 1_555 D N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 F CG2 ILE 22 1 ILE 21 1_555 BC C8 NS0 . 1 NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? covale ? covale3 DA CG2 ILE 22 c ILE 21 1_555 GD C8 NS0 . c NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale4 HA CD1 ILE 22 o ILE 21 1_555 OD C8 NS0 . o NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 6ET5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CB 8 HEM C 1 401 609 HEM HEM . DB 8 HEM C 1 402 610 HEM HEM . EB 8 HEM C 1 403 611 HEM HEM . FB 8 HEM C 1 404 612 HEM HEM . GB 9 BCB L 1 301 602 BCB BCB . HB 9 BCB L 1 302 604 BCB BCB . IB 10 BPB L 1 303 606 BPB BPB . JB 11 UQ9 L 1 304 1 UQ9 UQ9 . KB 12 FE L 1 305 607 FE FE . LB 13 SO4 M 1 401 618 SO4 SO4 . MB 13 SO4 M 1 402 619 SO4 SO4 . NB 13 SO4 M 1 403 620 SO4 SO4 . OB 13 SO4 M 1 404 621 SO4 SO4 . PB 9 BCB M 1 405 601 BCB BCB . QB 9 BCB M 1 406 603 BCB BCB . RB 10 BPB M 1 407 605 BPB BPB . SB 14 LDA M 1 408 616 LDA LDA . TB 15 MQ9 M 1 409 1 MQ9 MQ9 . UB 16 NS5 M 1 410 1 NS5 NS5 . VB 14 LDA H 1 301 615 LDA LDA . WB 13 SO4 H 1 302 617 SO4 SO4 . XB 13 SO4 H 1 303 622 SO4 SO4 . YB 13 SO4 H 1 304 623 SO4 SO4 . ZB 9 BCB z 1 101 30 BCB BCB . AC 9 BCB 1 1 101 29 BCB BCB . BC 17 NS0 1 1 102 1 NS0 NS0 . CC 9 BCB F 1 101 2 BCB BCB . DC 9 BCB K 1 101 4 BCB BCB . EC 9 BCB P 1 101 6 BCB BCB . FC 9 BCB S 1 101 8 BCB BCB . GC 9 BCB V 1 101 10 BCB BCB . HC 9 BCB Y 1 101 12 BCB BCB . IC 9 BCB b 1 101 14 BCB BCB . JC 9 BCB e 1 101 16 BCB BCB . KC 9 BCB h 1 101 18 BCB BCB . LC 9 BCB k 1 101 20 BCB BCB . MC 9 BCB n 1 101 22 BCB BCB . NC 9 BCB q 1 101 24 BCB BCB . OC 9 BCB t 1 101 26 BCB BCB . PC 9 BCB w 1 101 28 BCB BCB . QC 9 BCB 3 1 101 32 BCB BCB . RC 11 UQ9 6 1 101 2 UQ9 UQ9 . SC 9 BCB 6 1 102 34 BCB BCB . TC 9 BCB G 1 101 1 BCB BCB . UC 17 NS0 G 1 102 15 NS0 NS0 . VC 9 BCB N 1 101 3 BCB BCB . WC 17 NS0 N 1 102 14 NS0 NS0 . XC 9 BCB Q 1 101 5 BCB BCB . YC 17 NS0 Q 1 102 13 NS0 NS0 . ZC 9 BCB T 1 101 7 BCB BCB . AD 17 NS0 T 1 102 12 NS0 NS0 . BD 9 BCB W 1 101 9 BCB BCB . CD 17 NS0 W 1 102 11 NS0 NS0 . DD 9 BCB Z 1 101 11 BCB BCB . ED 17 NS0 Z 1 102 10 NS0 NS0 . FD 9 BCB c 1 101 13 BCB BCB . GD 17 NS0 c 1 102 9 NS0 NS0 . HD 9 BCB f 1 101 15 BCB BCB . ID 17 NS0 f 1 102 8 NS0 NS0 . JD 9 BCB i 1 101 17 BCB BCB . KD 17 NS0 i 1 102 7 NS0 NS0 . LD 9 BCB l 1 101 19 BCB BCB . MD 17 NS0 l 1 102 6 NS0 NS0 . ND 9 BCB o 1 101 21 BCB BCB . OD 17 NS0 o 1 102 5 NS0 NS0 . PD 9 BCB r 1 101 23 BCB BCB . QD 17 NS0 r 1 102 4 NS0 NS0 . RD 9 BCB u 1 101 25 BCB BCB . SD 17 NS0 u 1 102 3 NS0 NS0 . TD 9 BCB x 1 101 27 BCB BCB . UD 17 NS0 x 1 102 2 NS0 NS0 . VD 9 BCB 4 1 101 31 BCB BCB . WD 17 NS0 4 1 102 17 NS0 NS0 . XD 9 BCB 7 1 101 33 BCB BCB . YD 17 NS0 7 1 102 16 NS0 NS0 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . EB 8 143.024 117.493 140.042 1 67.45 ? CHA HEM 403 C 1 HETATM 2 C CHB HEM . . . EB 8 139.898 119.087 136.702 1 63.41 ? CHB HEM 403 C 1 HETATM 3 C CHC HEM . . . EB 8 143.487 121.751 134.808 1 65.11 ? CHC HEM 403 C 1 HETATM 4 C CHD HEM . . . EB 8 146.672 119.326 137.525 1 65.33 ? CHD HEM 403 C 1 HETATM 5 C C1A HEM . . . EB 8 141.88 117.728 139.323 1 74.57 ? C1A HEM 403 C 1 HETATM 6 C C2A HEM . . . EB 8 140.598 117.204 139.655 1 75.51 ? C2A HEM 403 C 1 HETATM 7 C C3A HEM . . . EB 8 139.712 117.643 138.72 1 67.27 ? C3A HEM 403 C 1 HETATM 8 C C4A HEM . . . EB 8 140.435 118.441 137.804 1 67.38 ? C4A HEM 403 C 1 HETATM 9 C CMA HEM . . . EB 8 138.235 117.348 138.693 1 67.28 ? CMA HEM 403 C 1 HETATM 10 C CAA HEM . . . EB 8 140.295 116.336 140.86 1 76.45 ? CAA HEM 403 C 1 HETATM 11 C CBA HEM . . . EB 8 140.384 114.865 140.481 1 82.21 ? CBA HEM 403 C 1 HETATM 12 C CGA HEM . . . EB 8 140.15 113.961 141.668 1 90.56 ? CGA HEM 403 C 1 HETATM 13 O O1A HEM . . . EB 8 139.156 114.098 142.414 1 92.59 ? O1A HEM 403 C 1 HETATM 14 O O2A HEM . . . EB 8 140.943 113.023 141.888 1 95.41 ? O2A HEM 403 C 1 HETATM 15 C C1B HEM . . . EB 8 140.623 120.041 135.96 1 64.56 ? C1B HEM 403 C 1 HETATM 16 C C2B HEM . . . EB 8 140.037 120.895 134.988 1 66.53 ? C2B HEM 403 C 1 HETATM 17 C C3B HEM . . . EB 8 141.059 121.632 134.458 1 65.95 ? C3B HEM 403 C 1 HETATM 18 C C4B HEM . . . EB 8 142.269 121.215 135.122 1 63.48 ? C4B HEM 403 C 1 HETATM 19 C CMB HEM . . . EB 8 138.577 120.938 134.573 1 61.4 ? CMB HEM 403 C 1 HETATM 20 C CAB HEM . . . EB 8 140.979 122.678 133.457 1 62.05 ? CAB HEM 403 C 1 HETATM 21 C CBB HEM . . . EB 8 140.136 123.682 133.783 1 63.08 ? CBB HEM 403 C 1 HETATM 22 C C1C HEM . . . EB 8 144.696 121.253 135.311 1 67.93 ? C1C HEM 403 C 1 HETATM 23 C C2C HEM . . . EB 8 146.001 121.547 134.825 1 70.87 ? C2C HEM 403 C 1 HETATM 24 C C3C HEM . . . EB 8 146.916 120.86 135.597 1 68.32 ? C3C HEM 403 C 1 HETATM 25 C C4C HEM . . . EB 8 146.153 120.14 136.565 1 68.74 ? C4C HEM 403 C 1 HETATM 26 C CMC HEM . . . EB 8 146.372 122.464 133.676 1 67.54 ? CMC HEM 403 C 1 HETATM 27 C CAC HEM . . . EB 8 148.393 120.926 135.439 1 69.14 ? CAC HEM 403 C 1 HETATM 28 C CBC HEM . . . EB 8 149.052 122.088 135.282 1 68.04 ? CBC HEM 403 C 1 HETATM 29 C C1D HEM . . . EB 8 145.86 118.704 138.454 1 69.14 ? C1D HEM 403 C 1 HETATM 30 C C2D HEM . . . EB 8 146.458 117.984 139.571 1 73.07 ? C2D HEM 403 C 1 HETATM 31 C C3D HEM . . . EB 8 145.448 117.482 140.274 1 71.24 ? C3D HEM 403 C 1 HETATM 32 C C4D HEM . . . EB 8 144.241 117.879 139.571 1 68.62 ? C4D HEM 403 C 1 HETATM 33 C CMD HEM . . . EB 8 147.925 117.849 139.897 1 74.07 ? CMD HEM 403 C 1 HETATM 34 C CAD HEM . . . EB 8 145.561 116.669 141.527 1 73.12 ? CAD HEM 403 C 1 HETATM 35 C CBD HEM . . . EB 8 146.091 117.526 142.689 1 83.16 ? CBD HEM 403 C 1 HETATM 36 C CGD HEM . . . EB 8 146.212 116.746 143.997 1 102.39 ? CGD HEM 403 C 1 HETATM 37 O O1D HEM . . . EB 8 145.962 117.314 145.086 1 112.65 ? O1D HEM 403 C 1 HETATM 38 O O2D HEM . . . EB 8 146.558 115.536 144.054 1 107.82 ? O2D HEM 403 C 1 HETATM 39 N NA HEM . . . EB 8 141.77 118.44 138.16 1 70.61 ? NA HEM 403 C 1 HETATM 40 N NB HEM . . . EB 8 141.937 120.265 135.972 1 62.07 ? NB HEM 403 C 1 HETATM 41 N NC HEM . . . EB 8 144.831 120.354 136.31 1 64.08 ? NC HEM 403 C 1 HETATM 42 N ND HEM . . . EB 8 144.525 118.588 138.471 1 69.68 ? ND HEM 403 C 1 HETATM 43 FE FE HEM . . . EB 8 143.286 119.38 137.276 1 66.47 ? FE HEM 403 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #