data_6ET5 # _model_server_result.job_id qVJ7FL40zRkqrLmBgNcCVA _model_server_result.datetime_utc '2025-03-04 08:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6et5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RB","auth_seq_id":407}' # _entry.id 6ET5 # _exptl.entry_id 6ET5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 887.199 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOPHEOPHYTIN B' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ET5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ET5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 54-meric _pdbx_struct_assembly.oligomeric_count 54 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 IB N N ? 10 RB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 74 C MET 74 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 CB FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 DB FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 EB FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 FB FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 B NE2 HIS 191 L HIS 190 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 B NE2 HIS 231 L HIS 230 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 C NE2 HIS 217 M HIS 217 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 C OE1 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc13 C OE2 GLU 232 M GLU 232 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 C NE2 HIS 264 M HIS 264 1_555 KB FE FE . L FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? covale ? covale1 D C FME 1 H FME 1 1_555 D N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 F CG2 ILE 22 1 ILE 21 1_555 BC C8 NS0 . 1 NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? covale ? covale3 DA CG2 ILE 22 c ILE 21 1_555 GD C8 NS0 . c NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale4 HA CD1 ILE 22 o ILE 21 1_555 OD C8 NS0 . o NS0 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? # _chem_comp.formula 'C55 H74 N4 O6' _chem_comp.formula_weight 887.199 _chem_comp.id BPB _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOPHEOPHYTIN B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ET5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CB 8 HEM C 1 401 609 HEM HEM . DB 8 HEM C 1 402 610 HEM HEM . EB 8 HEM C 1 403 611 HEM HEM . FB 8 HEM C 1 404 612 HEM HEM . GB 9 BCB L 1 301 602 BCB BCB . HB 9 BCB L 1 302 604 BCB BCB . IB 10 BPB L 1 303 606 BPB BPB . JB 11 UQ9 L 1 304 1 UQ9 UQ9 . KB 12 FE L 1 305 607 FE FE . LB 13 SO4 M 1 401 618 SO4 SO4 . MB 13 SO4 M 1 402 619 SO4 SO4 . NB 13 SO4 M 1 403 620 SO4 SO4 . OB 13 SO4 M 1 404 621 SO4 SO4 . PB 9 BCB M 1 405 601 BCB BCB . QB 9 BCB M 1 406 603 BCB BCB . RB 10 BPB M 1 407 605 BPB BPB . SB 14 LDA M 1 408 616 LDA LDA . TB 15 MQ9 M 1 409 1 MQ9 MQ9 . UB 16 NS5 M 1 410 1 NS5 NS5 . VB 14 LDA H 1 301 615 LDA LDA . WB 13 SO4 H 1 302 617 SO4 SO4 . XB 13 SO4 H 1 303 622 SO4 SO4 . YB 13 SO4 H 1 304 623 SO4 SO4 . ZB 9 BCB z 1 101 30 BCB BCB . AC 9 BCB 1 1 101 29 BCB BCB . BC 17 NS0 1 1 102 1 NS0 NS0 . CC 9 BCB F 1 101 2 BCB BCB . DC 9 BCB K 1 101 4 BCB BCB . EC 9 BCB P 1 101 6 BCB BCB . FC 9 BCB S 1 101 8 BCB BCB . GC 9 BCB V 1 101 10 BCB BCB . HC 9 BCB Y 1 101 12 BCB BCB . IC 9 BCB b 1 101 14 BCB BCB . JC 9 BCB e 1 101 16 BCB BCB . KC 9 BCB h 1 101 18 BCB BCB . LC 9 BCB k 1 101 20 BCB BCB . MC 9 BCB n 1 101 22 BCB BCB . NC 9 BCB q 1 101 24 BCB BCB . OC 9 BCB t 1 101 26 BCB BCB . PC 9 BCB w 1 101 28 BCB BCB . QC 9 BCB 3 1 101 32 BCB BCB . RC 11 UQ9 6 1 101 2 UQ9 UQ9 . SC 9 BCB 6 1 102 34 BCB BCB . TC 9 BCB G 1 101 1 BCB BCB . UC 17 NS0 G 1 102 15 NS0 NS0 . VC 9 BCB N 1 101 3 BCB BCB . WC 17 NS0 N 1 102 14 NS0 NS0 . XC 9 BCB Q 1 101 5 BCB BCB . YC 17 NS0 Q 1 102 13 NS0 NS0 . ZC 9 BCB T 1 101 7 BCB BCB . AD 17 NS0 T 1 102 12 NS0 NS0 . BD 9 BCB W 1 101 9 BCB BCB . CD 17 NS0 W 1 102 11 NS0 NS0 . DD 9 BCB Z 1 101 11 BCB BCB . ED 17 NS0 Z 1 102 10 NS0 NS0 . FD 9 BCB c 1 101 13 BCB BCB . GD 17 NS0 c 1 102 9 NS0 NS0 . HD 9 BCB f 1 101 15 BCB BCB . ID 17 NS0 f 1 102 8 NS0 NS0 . JD 9 BCB i 1 101 17 BCB BCB . KD 17 NS0 i 1 102 7 NS0 NS0 . LD 9 BCB l 1 101 19 BCB BCB . MD 17 NS0 l 1 102 6 NS0 NS0 . ND 9 BCB o 1 101 21 BCB BCB . OD 17 NS0 o 1 102 5 NS0 NS0 . PD 9 BCB r 1 101 23 BCB BCB . QD 17 NS0 r 1 102 4 NS0 NS0 . RD 9 BCB u 1 101 25 BCB BCB . SD 17 NS0 u 1 102 3 NS0 NS0 . TD 9 BCB x 1 101 27 BCB BCB . UD 17 NS0 x 1 102 2 NS0 NS0 . VD 9 BCB 4 1 101 31 BCB BCB . WD 17 NS0 4 1 102 17 NS0 NS0 . XD 9 BCB 7 1 101 33 BCB BCB . YD 17 NS0 7 1 102 16 NS0 NS0 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BPB . . . RB 10 104.891 129.399 136.9 1 132.68 ? C1 BPB 407 M 1 HETATM 2 C C2 BPB . . . RB 10 104.67 130.879 137.206 1 143.81 ? C2 BPB 407 M 1 HETATM 3 C C3 BPB . . . RB 10 105.62 131.841 137.379 1 153.97 ? C3 BPB 407 M 1 HETATM 4 C C4 BPB . . . RB 10 107.097 131.517 137.31 1 146.34 ? C4 BPB 407 M 1 HETATM 5 C C5 BPB . . . RB 10 105.154 133.265 137.69 1 158.13 ? C5 BPB 407 M 1 HETATM 6 C C6 BPB . . . RB 10 105.647 134.393 136.775 1 164.85 ? C6 BPB 407 M 1 HETATM 7 C C7 BPB . . . RB 10 105.8 135.71 137.556 1 178.44 ? C7 BPB 407 M 1 HETATM 8 C C8 BPB . . . RB 10 106.233 136.954 136.746 1 203.04 ? C8 BPB 407 M 1 HETATM 9 C C9 BPB . . . RB 10 107.398 136.672 135.782 1 218.55 ? C9 BPB 407 M 1 HETATM 10 N NA BPB . . . RB 10 107.536 125.494 130.481 1 86.48 ? NA BPB 407 M 1 HETATM 11 N NB BPB . . . RB 10 110.148 124.8 129.63 1 81.22 ? NB BPB 407 M 1 HETATM 12 N NC BPB . . . RB 10 109.606 121.77 128.842 1 79.75 ? NC BPB 407 M 1 HETATM 13 N ND BPB . . . RB 10 107.096 122.619 129.157 1 76.7 ? ND BPB 407 M 1 HETATM 14 C C10 BPB . . . RB 10 106.455 138.233 137.608 1 216.46 ? C10 BPB 407 M 1 HETATM 15 C C11 BPB . . . RB 10 107.534 138.304 138.723 1 226.09 ? C11 BPB 407 M 1 HETATM 16 C C12 BPB . . . RB 10 107.962 139.726 139.168 1 206.75 ? C12 BPB 407 M 1 HETATM 17 C C13 BPB . . . RB 10 107.981 139.984 140.699 1 186.8 ? C13 BPB 407 M 1 HETATM 18 C C14 BPB . . . RB 10 109.363 140.4 141.206 1 160.96 ? C14 BPB 407 M 1 HETATM 19 C C15 BPB . . . RB 10 107.009 141.075 141.169 1 179.76 ? C15 BPB 407 M 1 HETATM 20 C C16 BPB . . . RB 10 105.523 140.864 140.874 1 186.52 ? C16 BPB 407 M 1 HETATM 21 C C17 BPB . . . RB 10 104.989 141.98 139.97 1 222.49 ? C17 BPB 407 M 1 HETATM 22 C C18 BPB . . . RB 10 104.557 141.495 138.577 1 259.23 ? C18 BPB 407 M 1 HETATM 23 C C19 BPB . . . RB 10 105.52 141.931 137.472 1 269.25 ? C19 BPB 407 M 1 HETATM 24 C C1A BPB . . . RB 10 106.264 125.528 130.555 1 89.09 ? C1A BPB 407 M 1 HETATM 25 O O1A BPB . . . RB 10 105.088 126.884 135.408 1 141.08 ? O1A BPB 407 M 1 HETATM 26 C C1B BPB . . . RB 10 110.351 126.092 130.044 1 80.56 ? C1B BPB 407 M 1 HETATM 27 C C1C BPB . . . RB 10 110.922 121.764 128.893 1 81.43 ? C1C BPB 407 M 1 HETATM 28 C C1D BPB . . . RB 10 106.753 121.418 128.584 1 78.17 ? C1D BPB 407 M 1 HETATM 29 O O1D BPB . . . RB 10 102.335 126.022 129.666 1 95.48 ? O1D BPB 407 M 1 HETATM 30 C C20 BPB . . . RB 10 103.136 141.941 138.23 1 279.36 ? C20 BPB 407 M 1 HETATM 31 C C2A BPB . . . RB 10 105.76 126.819 131.137 1 90.02 ? C2A BPB 407 M 1 HETATM 32 O O2A BPB . . . RB 10 104.43 129.093 135.567 1 140.69 ? O2A BPB 407 M 1 HETATM 33 C C2B BPB . . . RB 10 111.771 126.426 130.197 1 75.3 ? C2B BPB 407 M 1 HETATM 34 C C2C BPB . . . RB 10 111.46 120.424 128.535 1 75.45 ? C2C BPB 407 M 1 HETATM 35 C C2D BPB . . . RB 10 105.291 121.218 128.486 1 75.25 ? C2D BPB 407 M 1 HETATM 36 O O2D BPB . . . RB 10 103.971 125.926 128.067 1 86.26 ? O2D BPB 407 M 1 HETATM 37 C C3A BPB . . . RB 10 106.88 127.7 130.629 1 88.01 ? C3A BPB 407 M 1 HETATM 38 C C3B BPB . . . RB 10 112.438 125.187 129.866 1 75.65 ? C3B BPB 407 M 1 HETATM 39 C C3C BPB . . . RB 10 110.327 119.943 127.647 1 78.86 ? C3C BPB 407 M 1 HETATM 40 C C3D BPB . . . RB 10 104.795 122.461 129.071 1 70.85 ? C3D BPB 407 M 1 HETATM 41 C C4A BPB . . . RB 10 108.002 126.742 130.454 1 82.81 ? C4A BPB 407 M 1 HETATM 42 C C4B BPB . . . RB 10 111.379 124.236 129.531 1 76.45 ? C4B BPB 407 M 1 HETATM 43 C C4C BPB . . . RB 10 109.2 120.748 128.227 1 79.89 ? C4C BPB 407 M 1 HETATM 44 C C4D BPB . . . RB 10 105.85 123.197 129.425 1 77.57 ? C4D BPB 407 M 1 HETATM 45 C CAA BPB . . . RB 10 105.697 126.796 132.663 1 94.99 ? CAA BPB 407 M 1 HETATM 46 C CAB BPB . . . RB 10 113.895 124.955 129.936 1 87.93 ? CAB BPB 407 M 1 HETATM 47 C CAC BPB . . . RB 10 110.039 118.445 127.673 1 90.27 ? CAC BPB 407 M 1 HETATM 48 C CAD BPB . . . RB 10 103.581 123.183 129.422 1 70.37 ? CAD BPB 407 M 1 HETATM 49 C CBA BPB . . . RB 10 104.818 127.902 133.258 1 106.1 ? CBA BPB 407 M 1 HETATM 50 C CBB BPB . . . RB 10 114.358 123.829 129.065 1 88.98 ? CBB BPB 407 M 1 HETATM 51 O OBB BPB . . . RB 10 114.625 125.625 130.696 1 82.53 ? OBB BPB 407 M 1 HETATM 52 C CBC BPB . . . RB 10 111.017 117.629 126.843 1 99.71 ? CBC BPB 407 M 1 HETATM 53 C CBD BPB . . . RB 10 103.924 124.454 130.08 1 75.41 ? CBD BPB 407 M 1 HETATM 54 O OBD BPB . . . RB 10 102.389 122.809 129.255 1 73.39 ? OBD BPB 407 M 1 HETATM 55 C CED BPB . . . RB 10 103.026 126.22 127.055 1 99.05 ? CED BPB 407 M 1 HETATM 56 C CGA BPB . . . RB 10 104.808 127.899 134.788 1 124.49 ? CGA BPB 407 M 1 HETATM 57 C CGD BPB . . . RB 10 103.357 125.519 129.286 1 82.23 ? CGD BPB 407 M 1 HETATM 58 C CHA BPB . . . RB 10 105.388 124.458 130.031 1 78.3 ? CHA BPB 407 M 1 HETATM 59 C CHB BPB . . . RB 10 109.27 127.092 130.252 1 71.99 ? CHB BPB 407 M 1 HETATM 60 C CHC BPB . . . RB 10 111.688 122.832 129.164 1 80.89 ? CHC BPB 407 M 1 HETATM 61 C CHD BPB . . . RB 10 107.764 120.45 128.103 1 74.88 ? CHD BPB 407 M 1 HETATM 62 C CMA BPB . . . RB 10 106.433 128.149 129.255 1 81.27 ? CMA BPB 407 M 1 HETATM 63 C CMB BPB . . . RB 10 112.396 127.696 130.611 1 84.65 ? CMB BPB 407 M 1 HETATM 64 C CMC BPB . . . RB 10 112.727 120.59 127.736 1 76.94 ? CMC BPB 407 M 1 HETATM 65 C CMD BPB . . . RB 10 104.443 120.131 127.946 1 79.25 ? CMD BPB 407 M 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #