data_6ET7
#
_model_server_result.job_id            -smegj-7jLKnZmaFnPfPwQ 
_model_server_result.datetime_utc      '2024-11-14 04:01:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6et7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    6ET7 
#
_exptl.entry_id    6ET7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              585.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ET7 
_cell.length_a            49.46 
_cell.length_b            78.42 
_cell.length_c            443.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ET7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 17 1_555 C CBA LBV . A LBV 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
covale ? covale2 B SG CYS 19 B CYS 17 1_555 E CBA LBV . B LBV 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? 
#
_chem_comp.formula           'C33 H37 N4 O6 1' 
_chem_comp.formula_weight    585.67 
_chem_comp.id                LBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2(R),3(E)- PHYTOCHROMOBILIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A N_A LBV sing 173 n n 
C1A C2A LBV sing 174 n n 
C1B C2B LBV doub 175 n y 
C1B CHB LBV sing 176 n n 
O1B CGB LBV doub 177 n n 
C1C CHC LBV doub 178 z n 
C1D CHD LBV doub 179 z n 
C2A CMA LBV sing 180 n n 
C2A C3A LBV sing 181 n n 
C2B CMB LBV sing 182 n n 
C2C C1C LBV sing 183 n n 
O2C CGC LBV doub 184 n n 
C2D C1D LBV sing 185 n n 
C2D CMD LBV sing 186 n n 
C3A CAA LBV doub 187 e n 
C3B C2B LBV sing 188 n y 
C3B CAB LBV sing 189 n n 
C3C C2C LBV doub 190 n n 
C3C C4C LBV sing 191 n n 
C3D C2D LBV doub 192 n n 
C4A C3A LBV sing 193 n n 
C4A CHB LBV doub 194 z n 
C4B C3B LBV doub 195 n y 
C4B N_B LBV sing 196 n y 
C4C N_C LBV doub 197 n n 
C4D C3D LBV sing 198 n n 
C4D N_D LBV sing 199 n n 
CAA CBA LBV sing 200 n n 
CAC C2C LBV sing 201 n n 
CAC CBC LBV sing 202 n n 
CAD C3D LBV sing 203 n n 
CBB CAB LBV sing 204 n n 
CBB CGB LBV sing 205 n n 
CBD CAD LBV doub 206 n n 
CGB O2B LBV sing 207 n n 
CGC O1C LBV sing 208 n n 
CGC CBC LBV sing 209 n n 
CHC C4B LBV sing 210 n n 
CHD C4C LBV sing 211 n n 
CMC C3C LBV sing 212 n n 
N_A C4A LBV sing 213 n n 
O_A C1A LBV doub 214 n n 
N_B C1B LBV sing 215 n y 
N_C C1C LBV sing 216 n n 
N_D C1D LBV sing 217 n n 
O_D C4D LBV doub 218 n n 
O1C HO1C LBV sing 219 n n 
C2A H2A LBV sing 220 n n 
O2B HO2B LBV sing 221 n n 
CAA HAA1 LBV sing 222 n n 
CAB HAB1 LBV sing 223 n n 
CAB HAB2 LBV sing 224 n n 
CAC HAC1 LBV sing 225 n n 
CAC HAC2 LBV sing 226 n n 
CAD HAD1 LBV sing 227 n n 
CBA HBA1 LBV sing 228 n n 
CBA HBA2 LBV sing 229 n n 
CBA HBA3 LBV sing 230 n n 
CBB HBB1 LBV sing 231 n n 
CBB HBB2 LBV sing 232 n n 
CBC HBC1 LBV sing 233 n n 
CBC HBC2 LBV sing 234 n n 
CBD HBD1 LBV sing 235 n n 
CBD HBD2 LBV sing 236 n n 
CHB HHB1 LBV sing 237 n n 
CHC HHC1 LBV sing 238 n n 
CHD HHD1 LBV sing 239 n n 
CMA HMA1 LBV sing 240 n n 
CMA HMA2 LBV sing 241 n n 
CMA HMA3 LBV sing 242 n n 
CMB HMB1 LBV sing 243 n n 
CMB HMB2 LBV sing 244 n n 
CMB HMB3 LBV sing 245 n n 
CMC HMC1 LBV sing 246 n n 
CMC HMC2 LBV sing 247 n n 
CMC HMC3 LBV sing 248 n n 
CMD HMD1 LBV sing 249 n n 
CMD HMD2 LBV sing 250 n n 
CMD HMD3 LBV sing 251 n n 
N_A HAD LBV sing 252 n n 
N_B HAE LBV sing 253 n n 
N_C HAF LBV sing 254 n n 
N_D HAG LBV sing 255 n n 
#
_atom_sites.entry_id                     6ET7 
_atom_sites.fract_transf_matrix[1][1]    0.020218 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012752 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002253 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LBV A 1 701 2 LBV LBV . 
D 3 CL A 1 702 1 CL CL . 
E 2 LBV B 1 701 1 LBV LBV . 
F 3 CL B 1 702 2 CL CL . 
G 4 HOH A 1 801 2 HOH HOH . 
H 4 HOH B 1 801 1 HOH HOH . 
H 4 HOH B 2 802 6 HOH HOH . 
H 4 HOH B 3 803 3 HOH HOH . 
H 4 HOH B 4 804 4 HOH HOH . 
H 4 HOH B 5 805 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A LBV . . . E 2 -6.55 -4.847 462.813 1 41.07 ? C1A LBV 701 B 1 
HETATM 2 C C1B LBV . . . E 2 -2.662 -2.963 460.994 1 32.12 ? C1B LBV 701 B 1 
HETATM 3 O O1B LBV . . . E 2 1.22 -0.262 457.251 1 72.45 ? O1B LBV 701 B 1 
HETATM 4 C C1C LBV . . . E 2 -2.587 1.416 462.633 1 39.94 ? C1C LBV 701 B 1 
HETATM 5 O O1C LBV . . . E 2 -1.603 6.066 461.803 1 65.26 ? O1C LBV 701 B 1 
HETATM 6 C C1D LBV . . . E 2 -5.877 3.228 465.626 1 27.26 ? C1D LBV 701 B 1 
HETATM 7 C C2A LBV . . . E 2 -6.252 -6.143 462.36 1 36.85 ? C2A LBV 701 B 1 
HETATM 8 C C2B LBV . . . E 2 -1.489 -2.756 460.284 1 30.41 ? C2B LBV 701 B 1 
HETATM 9 O O2B LBV . . . E 2 1.434 1.683 458.355 1 41.63 ? O2B LBV 701 B 1 
HETATM 10 C C2C LBV . . . E 2 -2.226 2.751 462.963 1 40.18 ? C2C LBV 701 B 1 
HETATM 11 O O2C LBV . . . E 2 -3.355 5.291 460.706 1 47.35 ? O2C LBV 701 B 1 
HETATM 12 C C2D LBV . . . E 2 -6.569 3.431 466.845 1 27.15 ? C2D LBV 701 B 1 
HETATM 13 C C3A LBV . . . E 2 -4.93 -6.084 461.846 1 40.84 ? C3A LBV 701 B 1 
HETATM 14 C C3B LBV . . . E 2 -1.072 -1.43 460.47 1 36.76 ? C3B LBV 701 B 1 
HETATM 15 C C3C LBV . . . E 2 -3.072 3.199 463.939 1 42.98 ? C3C LBV 701 B 1 
HETATM 16 C C3D LBV . . . E 2 -7.117 4.733 466.799 1 34.61 ? C3D LBV 701 B 1 
HETATM 17 C C4A LBV . . . E 2 -4.565 -4.719 461.73 1 38.5 ? C4A LBV 701 B 1 
HETATM 18 C C4B LBV . . . E 2 -2.011 -0.805 461.317 1 39.7 ? C4B LBV 701 B 1 
HETATM 19 C C4C LBV . . . E 2 -4 2.154 464.24 1 41.82 ? C4C LBV 701 B 1 
HETATM 20 C C4D LBV . . . E 2 -6.771 5.313 465.601 1 41.85 ? C4D LBV 701 B 1 
HETATM 21 C CAA LBV . . . E 2 -4.197 -7.162 461.357 1 54.21 ? CAA LBV 701 B 1 
HETATM 22 C CAB LBV . . . E 2 0.105 -0.807 459.908 1 42.87 ? CAB LBV 701 B 1 
HETATM 23 C CAC LBV . . . E 2 -1.132 3.474 462.391 1 29.72 ? CAC LBV 701 B 1 
HETATM 24 C CAD LBV . . . E 2 -7.926 5.453 467.702 1 34.92 ? CAD LBV 701 B 1 
HETATM 25 C CBA LBV . . . E 2 -4.602 -8.522 461.503 1 43.63 ? CBA LBV 701 B 1 
HETATM 26 C CBB LBV . . . E 2 -0.239 0.245 458.955 1 59.58 ? CBB LBV 701 B 1 
HETATM 27 C CBC LBV . . . E 2 -1.523 3.939 461.088 1 33.68 ? CBC LBV 701 B 1 
HETATM 28 C CBD LBV . . . E 2 -7.578 5.705 469 1 44.26 ? CBD LBV 701 B 1 
HETATM 29 C CGB LBV . . . E 2 0.898 0.584 458.12 1 63.92 ? CGB LBV 701 B 1 
HETATM 30 C CGC LBV . . . E 2 -2.218 5.192 461.203 1 50.24 ? CGC LBV 701 B 1 
HETATM 31 C CHB LBV . . . E 2 -3.42 -4.216 461.071 1 38.97 ? CHB LBV 701 B 1 
HETATM 32 C CHC LBV . . . E 2 -1.954 0.564 461.709 1 39.93 ? CHC LBV 701 B 1 
HETATM 33 C CHD LBV . . . E 2 -5.127 2.14 465.175 1 36.58 ? CHD LBV 701 B 1 
HETATM 34 C CMA LBV . . . E 2 -7.216 -6.424 461.37 1 28.02 ? CMA LBV 701 B 1 
HETATM 35 C CMB LBV . . . E 2 -0.822 -3.702 459.531 1 33.54 ? CMB LBV 701 B 1 
HETATM 36 C CMC LBV . . . E 2 -3.016 4.474 464.523 1 52.18 ? CMC LBV 701 B 1 
HETATM 37 C CMD LBV . . . E 2 -6.637 2.447 467.853 1 30.31 ? CMD LBV 701 B 1 
HETATM 38 N N_A LBV . . . E 2 -5.548 -4.015 462.357 1 45.02 ? N_A LBV 701 B 1 
HETATM 39 O O_A LBV . . . E 2 -7.658 -4.413 463.135 1 41.7 ? O_A LBV 701 B 1 
HETATM 40 N N_B LBV . . . E 2 -2.97 -1.773 461.619 1 27.93 ? N_B LBV 701 B 1 
HETATM 41 N N_C LBV . . . E 2 -3.67 1.098 463.428 1 37.27 ? N_C LBV 701 B 1 
HETATM 42 N N_D LBV . . . E 2 -6.044 4.401 464.936 1 41.82 ? N_D LBV 701 B 1 
HETATM 43 O O_D LBV . . . E 2 -7.003 6.388 465.105 1 52.38 ? O_D LBV 701 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           43 
#