data_6ETJ # _model_server_result.job_id EAMkVDmd64CVNYB_UaDdVQ _model_server_result.datetime_utc '2024-11-26 06:44:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6etj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 6ETJ # _exptl.entry_id 6ETJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ETJ _cell.length_a 103.774 _cell.length_b 103.774 _cell.length_c 259.563 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ETJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -43.2605 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 253 A ARG 252 1_555 A N NEP 254 A NEP 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C NEP 254 A NEP 253 1_555 A N GLY 255 A GLY 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ETJ _atom_sites.fract_transf_matrix[1][1] 0.009636 _atom_sites.fract_transf_matrix[1][2] 0.005564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 601 1 DMS DMS . C 3 F6P A 1 602 1 F6P F6P . D 4 BWW A 1 603 1 BWW 241 . E 5 ADP A 1 604 1 ADP ADP . F 6 HOH A 1 701 5 HOH HOH . F 6 HOH A 2 702 73 HOH HOH . F 6 HOH A 3 703 68 HOH HOH . F 6 HOH A 4 704 50 HOH HOH . F 6 HOH A 5 705 101 HOH HOH . F 6 HOH A 6 706 3 HOH HOH . F 6 HOH A 7 707 49 HOH HOH . F 6 HOH A 8 708 13 HOH HOH . F 6 HOH A 9 709 93 HOH HOH . F 6 HOH A 10 710 83 HOH HOH . F 6 HOH A 11 711 55 HOH HOH . F 6 HOH A 12 712 72 HOH HOH . F 6 HOH A 13 713 36 HOH HOH . F 6 HOH A 14 714 61 HOH HOH . F 6 HOH A 15 715 60 HOH HOH . F 6 HOH A 16 716 30 HOH HOH . F 6 HOH A 17 717 26 HOH HOH . F 6 HOH A 18 718 17 HOH HOH . F 6 HOH A 19 719 71 HOH HOH . F 6 HOH A 20 720 64 HOH HOH . F 6 HOH A 21 721 88 HOH HOH . F 6 HOH A 22 722 43 HOH HOH . F 6 HOH A 23 723 44 HOH HOH . F 6 HOH A 24 724 6 HOH HOH . F 6 HOH A 25 725 48 HOH HOH . F 6 HOH A 26 726 19 HOH HOH . F 6 HOH A 27 727 102 HOH HOH . F 6 HOH A 28 728 27 HOH HOH . F 6 HOH A 29 729 40 HOH HOH . F 6 HOH A 30 730 2 HOH HOH . F 6 HOH A 31 731 65 HOH HOH . F 6 HOH A 32 732 9 HOH HOH . F 6 HOH A 33 733 87 HOH HOH . F 6 HOH A 34 734 41 HOH HOH . F 6 HOH A 35 735 98 HOH HOH . F 6 HOH A 36 736 25 HOH HOH . F 6 HOH A 37 737 45 HOH HOH . F 6 HOH A 38 738 29 HOH HOH . F 6 HOH A 39 739 46 HOH HOH . F 6 HOH A 40 740 70 HOH HOH . F 6 HOH A 41 741 74 HOH HOH . F 6 HOH A 42 742 23 HOH HOH . F 6 HOH A 43 743 35 HOH HOH . F 6 HOH A 44 744 24 HOH HOH . F 6 HOH A 45 745 4 HOH HOH . F 6 HOH A 46 746 47 HOH HOH . F 6 HOH A 47 747 18 HOH HOH . F 6 HOH A 48 748 75 HOH HOH . F 6 HOH A 49 749 67 HOH HOH . F 6 HOH A 50 750 33 HOH HOH . F 6 HOH A 51 751 63 HOH HOH . F 6 HOH A 52 752 34 HOH HOH . F 6 HOH A 53 753 62 HOH HOH . F 6 HOH A 54 754 42 HOH HOH . F 6 HOH A 55 755 31 HOH HOH . F 6 HOH A 56 756 81 HOH HOH . F 6 HOH A 57 757 14 HOH HOH . F 6 HOH A 58 758 79 HOH HOH . F 6 HOH A 59 759 38 HOH HOH . F 6 HOH A 60 760 10 HOH HOH . F 6 HOH A 61 761 99 HOH HOH . F 6 HOH A 62 762 37 HOH HOH . F 6 HOH A 63 763 11 HOH HOH . F 6 HOH A 64 764 21 HOH HOH . F 6 HOH A 65 765 1 HOH HOH . F 6 HOH A 66 766 12 HOH HOH . F 6 HOH A 67 767 22 HOH HOH . F 6 HOH A 68 768 76 HOH HOH . F 6 HOH A 69 769 15 HOH HOH . F 6 HOH A 70 770 16 HOH HOH . F 6 HOH A 71 771 8 HOH HOH . F 6 HOH A 72 772 80 HOH HOH . F 6 HOH A 73 773 32 HOH HOH . F 6 HOH A 74 774 7 HOH HOH . F 6 HOH A 75 775 82 HOH HOH . F 6 HOH A 76 776 84 HOH HOH . F 6 HOH A 77 777 28 HOH HOH . F 6 HOH A 78 778 56 HOH HOH . F 6 HOH A 79 779 53 HOH HOH . F 6 HOH A 80 780 77 HOH HOH . F 6 HOH A 81 781 78 HOH HOH . F 6 HOH A 82 782 66 HOH HOH . F 6 HOH A 83 783 97 HOH HOH . F 6 HOH A 84 784 100 HOH HOH . F 6 HOH A 85 785 59 HOH HOH . F 6 HOH A 86 786 20 HOH HOH . F 6 HOH A 87 787 92 HOH HOH . F 6 HOH A 88 788 51 HOH HOH . F 6 HOH A 89 789 58 HOH HOH . F 6 HOH A 90 790 85 HOH HOH . F 6 HOH A 91 791 69 HOH HOH . F 6 HOH A 92 792 89 HOH HOH . F 6 HOH A 93 793 96 HOH HOH . F 6 HOH A 94 794 90 HOH HOH . F 6 HOH A 95 795 54 HOH HOH . F 6 HOH A 96 796 39 HOH HOH . F 6 HOH A 97 797 86 HOH HOH . F 6 HOH A 98 798 57 HOH HOH . F 6 HOH A 99 799 95 HOH HOH . F 6 HOH A 100 800 94 HOH HOH . F 6 HOH A 101 801 52 HOH HOH . F 6 HOH A 102 802 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 5 44.357 40.625 -4.521 1 33.67 ? PB ADP 604 A 1 HETATM 2 O O1B ADP . . . E 5 45.475 40.248 -5.462 1 32.95 ? O1B ADP 604 A 1 HETATM 3 O O2B ADP . . . E 5 43.712 39.431 -3.836 1 33.6 ? O2B ADP 604 A 1 HETATM 4 O O3B ADP . . . E 5 44.72 41.695 -3.498 1 32.98 ? O3B ADP 604 A 1 HETATM 5 P PA ADP . . . E 5 41.659 41.129 -5.394 1 37.28 ? PA ADP 604 A 1 HETATM 6 O O1A ADP . . . E 5 41.232 39.722 -5.781 1 41.31 ? O1A ADP 604 A 1 HETATM 7 O O2A ADP . . . E 5 41.295 41.585 -4.018 1 38.9 ? O2A ADP 604 A 1 HETATM 8 O O3A ADP . . . E 5 43.273 41.251 -5.575 1 34.36 ? O3A ADP 604 A 1 HETATM 9 O O5' ADP . . . E 5 41.013 42.184 -6.44 1 41.57 ? O5' ADP 604 A 1 HETATM 10 C C5' ADP . . . E 5 39.819 41.912 -7.179 1 40.07 ? C5' ADP 604 A 1 HETATM 11 C C4' ADP . . . E 5 39.912 42.653 -8.498 1 41.06 ? C4' ADP 604 A 1 HETATM 12 O O4' ADP . . . E 5 40.84 42.001 -9.367 1 41.9 ? O4' ADP 604 A 1 HETATM 13 C C3' ADP . . . E 5 38.601 42.778 -9.271 1 42.79 ? C3' ADP 604 A 1 HETATM 14 O O3' ADP . . . E 5 38.419 44.168 -9.595 1 41.02 ? O3' ADP 604 A 1 HETATM 15 C C2' ADP . . . E 5 38.865 41.989 -10.535 1 41.01 ? C2' ADP 604 A 1 HETATM 16 O O2' ADP . . . E 5 38.221 42.537 -11.668 1 41.22 ? O2' ADP 604 A 1 HETATM 17 C C1' ADP . . . E 5 40.365 42.111 -10.705 1 41.55 ? C1' ADP 604 A 1 HETATM 18 N N9 ADP . . . E 5 40.963 41.02 -11.508 1 42.2 ? N9 ADP 604 A 1 HETATM 19 C C8 ADP . . . E 5 40.439 39.8 -11.737 1 40.91 ? C8 ADP 604 A 1 HETATM 20 N N7 ADP . . . E 5 41.272 39.06 -12.516 1 43.17 ? N7 ADP 604 A 1 HETATM 21 C C5 ADP . . . E 5 42.36 39.808 -12.783 1 42.04 ? C5 ADP 604 A 1 HETATM 22 C C6 ADP . . . E 5 43.633 39.649 -13.531 1 46.44 ? C6 ADP 604 A 1 HETATM 23 N N6 ADP . . . E 5 43.954 38.507 -14.184 1 47.06 ? N6 ADP 604 A 1 HETATM 24 N N1 ADP . . . E 5 44.49 40.702 -13.547 1 47.98 ? N1 ADP 604 A 1 HETATM 25 C C2 ADP . . . E 5 44.209 41.852 -12.92 1 41.86 ? C2 ADP 604 A 1 HETATM 26 N N3 ADP . . . E 5 43.083 42.045 -12.214 1 41.39 ? N3 ADP 604 A 1 HETATM 27 C C4 ADP . . . E 5 42.145 41.091 -12.106 1 40.45 ? C4 ADP 604 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #