data_6EU6 # _model_server_result.job_id s3h9vwZTVkjkTMBzYBodPQ _model_server_result.datetime_utc '2024-11-29 17:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6EU6 # _exptl.entry_id 6EU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.536 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EU6 _cell.length_a 99.745 _cell.length_b 99.745 _cell.length_c 89.069 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -49.8725 -86.381704 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.8725 -86.381704 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H40 O11' _chem_comp.formula_weight 468.536 _chem_comp.id ZDM _chem_comp.mon_nstd_flag . _chem_comp.name 'nonyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type saccharide _chem_comp.pdbx_synonyms nonyl-beta-D-maltoside # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ZDM sing 491 n n O1 C9 ZDM sing 492 n n C2 C3 ZDM sing 493 n n C2 O55 ZDM sing 494 n n C3 O7 ZDM sing 495 n n C4 C3 ZDM sing 496 n n C4 C57 ZDM sing 497 n n C5 O3 ZDM sing 498 n n C5 C7 ZDM sing 499 n n O5 C4 ZDM sing 500 n n C6 C1 ZDM sing 501 n n C6 O5 ZDM sing 502 n n O6 C11 ZDM sing 503 n n C7 O4 ZDM sing 504 n n O7 C10 ZDM sing 505 n n C8 O2 ZDM sing 506 n n C8 C7 ZDM sing 507 n n C9 C8 ZDM sing 508 n n C9 C11 ZDM sing 509 n n C10 O1 ZDM sing 510 n n C10 C5 ZDM sing 511 n n O16 C6 ZDM sing 512 n n C18 O16 ZDM sing 513 n n C19 C18 ZDM sing 514 n n C22 C19 ZDM sing 515 n n C25 C22 ZDM sing 516 n n C28 C25 ZDM sing 517 n n C31 C28 ZDM sing 518 n n C34 C31 ZDM sing 519 n n C34 C20 ZDM sing 520 n n O49 C1 ZDM sing 521 n n O61 C57 ZDM sing 522 n n C20 C21 ZDM sing 523 n n C21 H38 ZDM sing 524 n n C1 H1 ZDM sing 525 n n C2 H2 ZDM sing 526 n n O2 HO2 ZDM sing 527 n n C3 H3 ZDM sing 528 n n O3 HO3 ZDM sing 529 n n C4 H4 ZDM sing 530 n n O4 HO4 ZDM sing 531 n n C5 H5 ZDM sing 532 n n C6 H6 ZDM sing 533 n n O6 H101 ZDM sing 534 n n C7 H7 ZDM sing 535 n n C8 H8 ZDM sing 536 n n C9 H9 ZDM sing 537 n n C10 H10 ZDM sing 538 n n C11 H11 ZDM sing 539 n n C11 H16 ZDM sing 540 n n C18 H18 ZDM sing 541 n n C18 H18A ZDM sing 542 n n C19 H19 ZDM sing 543 n n C19 H19A ZDM sing 544 n n C22 H22 ZDM sing 545 n n C22 H20 ZDM sing 546 n n C25 H25 ZDM sing 547 n n C25 H221 ZDM sing 548 n n C28 H28 ZDM sing 549 n n C28 H28A ZDM sing 550 n n C31 H31 ZDM sing 551 n n C31 H26 ZDM sing 552 n n C34 H34 ZDM sing 553 n n C34 H34A ZDM sing 554 n n O49 HO49 ZDM sing 555 n n O55 HO55 ZDM sing 556 n n C57 H57 ZDM sing 557 n n C57 H57A ZDM sing 558 n n O61 HO61 ZDM sing 559 n n C20 H341 ZDM sing 560 n n C20 H35 ZDM sing 561 n n C21 H36 ZDM sing 562 n n C21 H37 ZDM sing 563 n n # _atom_sites.entry_id 6EU6 _atom_sites.fract_transf_matrix[1][1] 0.010026 _atom_sites.fract_transf_matrix[1][2] 0.005788 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 501 1 MES MES . C 2 MES A 1 502 2 MES MES . D 3 ZDM A 1 503 3 ZDM D9M . E 4 LMT A 1 504 5 LMT LMT . F 5 NH4 A 1 505 1 NH4 NH4 . G 5 NH4 A 1 506 2 NH4 NH4 . H 6 SO4 A 1 507 1 SO4 SO4 . I 7 HOH A 1 601 39 HOH HOH . I 7 HOH A 2 602 42 HOH HOH . I 7 HOH A 3 603 37 HOH HOH . I 7 HOH A 4 604 1 HOH HOH . I 7 HOH A 5 605 58 HOH HOH . I 7 HOH A 6 606 54 HOH HOH . I 7 HOH A 7 607 31 HOH HOH . I 7 HOH A 8 608 26 HOH HOH . I 7 HOH A 9 609 32 HOH HOH . I 7 HOH A 10 610 6 HOH HOH . I 7 HOH A 11 611 45 HOH HOH . I 7 HOH A 12 612 57 HOH HOH . I 7 HOH A 13 613 62 HOH HOH . I 7 HOH A 14 614 87 HOH HOH . I 7 HOH A 15 615 35 HOH HOH . I 7 HOH A 16 616 96 HOH HOH . I 7 HOH A 17 617 2 HOH HOH . I 7 HOH A 18 618 16 HOH HOH . I 7 HOH A 19 619 21 HOH HOH . I 7 HOH A 20 620 17 HOH HOH . I 7 HOH A 21 621 27 HOH HOH . I 7 HOH A 22 622 25 HOH HOH . I 7 HOH A 23 623 22 HOH HOH . I 7 HOH A 24 624 53 HOH HOH . I 7 HOH A 25 625 49 HOH HOH . I 7 HOH A 26 626 47 HOH HOH . I 7 HOH A 27 627 48 HOH HOH . I 7 HOH A 28 628 40 HOH HOH . I 7 HOH A 29 629 23 HOH HOH . I 7 HOH A 30 630 41 HOH HOH . I 7 HOH A 31 631 10 HOH HOH . I 7 HOH A 32 632 5 HOH HOH . I 7 HOH A 33 633 33 HOH HOH . I 7 HOH A 34 634 50 HOH HOH . I 7 HOH A 35 635 79 HOH HOH . I 7 HOH A 36 636 36 HOH HOH . I 7 HOH A 37 637 7 HOH HOH . I 7 HOH A 38 638 11 HOH HOH . I 7 HOH A 39 639 92 HOH HOH . I 7 HOH A 40 640 8 HOH HOH . I 7 HOH A 41 641 13 HOH HOH . I 7 HOH A 42 642 29 HOH HOH . I 7 HOH A 43 643 100 HOH HOH . I 7 HOH A 44 644 34 HOH HOH . I 7 HOH A 45 645 86 HOH HOH . I 7 HOH A 46 646 28 HOH HOH . I 7 HOH A 47 647 38 HOH HOH . I 7 HOH A 48 648 52 HOH HOH . I 7 HOH A 49 649 44 HOH HOH . I 7 HOH A 50 650 90 HOH HOH . I 7 HOH A 51 651 12 HOH HOH . I 7 HOH A 52 652 56 HOH HOH . I 7 HOH A 53 653 60 HOH HOH . I 7 HOH A 54 654 4 HOH HOH . I 7 HOH A 55 655 15 HOH HOH . I 7 HOH A 56 656 105 HOH HOH . I 7 HOH A 57 657 51 HOH HOH . I 7 HOH A 58 658 9 HOH HOH . I 7 HOH A 59 659 93 HOH HOH . I 7 HOH A 60 660 20 HOH HOH . I 7 HOH A 61 661 14 HOH HOH . I 7 HOH A 62 662 106 HOH HOH . I 7 HOH A 63 663 3 HOH HOH . I 7 HOH A 64 664 103 HOH HOH . I 7 HOH A 65 665 59 HOH HOH . I 7 HOH A 66 666 18 HOH HOH . I 7 HOH A 67 667 43 HOH HOH . I 7 HOH A 68 668 19 HOH HOH . I 7 HOH A 69 669 46 HOH HOH . I 7 HOH A 70 670 24 HOH HOH . I 7 HOH A 71 671 80 HOH HOH . I 7 HOH A 72 672 30 HOH HOH . I 7 HOH A 73 673 85 HOH HOH . I 7 HOH A 74 674 107 HOH HOH . I 7 HOH A 75 675 64 HOH HOH . I 7 HOH A 76 676 63 HOH HOH . I 7 HOH A 77 677 61 HOH HOH . I 7 HOH A 78 678 83 HOH HOH . I 7 HOH A 79 679 82 HOH HOH . I 7 HOH A 80 680 81 HOH HOH . I 7 HOH A 81 681 97 HOH HOH . I 7 HOH A 82 682 66 HOH HOH . I 7 HOH A 83 683 91 HOH HOH . I 7 HOH A 84 684 78 HOH HOH . I 7 HOH A 85 685 88 HOH HOH . I 7 HOH A 86 686 94 HOH HOH . I 7 HOH A 87 687 95 HOH HOH . I 7 HOH A 88 688 72 HOH HOH . I 7 HOH A 89 689 55 HOH HOH . I 7 HOH A 90 690 77 HOH HOH . I 7 HOH A 91 691 75 HOH HOH . I 7 HOH A 92 692 89 HOH HOH . I 7 HOH A 93 693 84 HOH HOH . I 7 HOH A 94 694 76 HOH HOH . I 7 HOH A 95 695 71 HOH HOH . I 7 HOH A 96 696 98 HOH HOH . I 7 HOH A 97 697 69 HOH HOH . I 7 HOH A 98 698 74 HOH HOH . I 7 HOH A 99 699 102 HOH HOH . I 7 HOH A 100 700 68 HOH HOH . I 7 HOH A 101 701 73 HOH HOH . I 7 HOH A 102 702 104 HOH HOH . I 7 HOH A 103 703 67 HOH HOH . I 7 HOH A 104 704 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZDM . . . D 3 -15.163 -25.194 -18.817 1 79.84 ? C1 ZDM 503 A 1 HETATM 2 O O1 ZDM . . . D 3 -13.603 -27.484 -23.964 1 84.78 ? O1 ZDM 503 A 1 HETATM 3 C C2 ZDM . . . D 3 -15.483 -25.616 -20.268 1 79.38 ? C2 ZDM 503 A 1 HETATM 4 O O2 ZDM . . . D 3 -16.305 -29.267 -25.793 1 73.98 ? O2 ZDM 503 A 1 HETATM 5 C C3 ZDM . . . D 3 -14.426 -26.393 -21.11 1 83.48 ? C3 ZDM 503 A 1 HETATM 6 O O3 ZDM . . . D 3 -16.431 -24.989 -23.675 1 71.49 ? O3 ZDM 503 A 1 HETATM 7 C C4 ZDM . . . D 3 -13.173 -26.749 -20.295 1 70.5 ? C4 ZDM 503 A 1 HETATM 8 O O4 ZDM . . . D 3 -17.693 -27.185 -24.841 1 66.24 ? O4 ZDM 503 A 1 HETATM 9 C C5 ZDM . . . D 3 -15.588 -25.926 -24.362 1 81.16 ? C5 ZDM 503 A 1 HETATM 10 O O5 ZDM . . . D 3 -12.845 -25.638 -19.484 1 75.4 ? O5 ZDM 503 A 1 HETATM 11 C C6 ZDM . . . D 3 -13.664 -25.249 -18.388 1 73.33 ? C6 ZDM 503 A 1 HETATM 12 O O6 ZDM . . . D 3 -12.013 -29.453 -25.087 1 90.02 ? O6 ZDM 503 A 1 HETATM 13 C C7 ZDM . . . D 3 -16.305 -27.264 -24.494 1 78.34 ? C7 ZDM 503 A 1 HETATM 14 O O7 ZDM . . . D 3 -14.058 -25.678 -22.311 1 88.44 ? O7 ZDM 503 A 1 HETATM 15 C C8 ZDM . . . D 3 -15.519 -28.108 -25.47 1 82.76 ? C8 ZDM 503 A 1 HETATM 16 C C9 ZDM . . . D 3 -14.184 -28.488 -24.804 1 89.48 ? C9 ZDM 503 A 1 HETATM 17 C C10 ZDM . . . D 3 -14.386 -26.337 -23.535 1 80 ? C10 ZDM 503 A 1 HETATM 18 C C11 ZDM . . . D 3 -13.084 -28.82 -25.805 1 87.87 ? C11 ZDM 503 A 1 HETATM 19 O O16 ZDM . . . D 3 -13.132 -25.978 -17.254 1 68.99 ? O16 ZDM 503 A 1 HETATM 20 C C18 ZDM . . . D 3 -13.819 -26.268 -16.036 1 59.2 ? C18 ZDM 503 A 1 HETATM 21 C C19 ZDM . . . D 3 -14.294 -25.04 -15.289 1 60.17 ? C19 ZDM 503 A 1 HETATM 22 C C22 ZDM . . . D 3 -14.114 -25.158 -13.784 1 62.94 ? C22 ZDM 503 A 1 HETATM 23 C C25 ZDM . . . D 3 -15.426 -25.24 -13.031 1 67.26 ? C25 ZDM 503 A 1 HETATM 24 C C28 ZDM . . . D 3 -15.262 -25.594 -11.546 1 67.58 ? C28 ZDM 503 A 1 HETATM 25 C C31 ZDM . . . D 3 -15.101 -24.376 -10.652 1 68.41 ? C31 ZDM 503 A 1 HETATM 26 C C34 ZDM . . . D 3 -15.554 -24.636 -9.233 1 69.36 ? C34 ZDM 503 A 1 HETATM 27 O O49 ZDM . . . D 3 -16.138 -25.821 -17.961 1 80.42 ? O49 ZDM 503 A 1 HETATM 28 O O55 ZDM . . . D 3 -15.813 -24.397 -20.909 1 81.19 ? O55 ZDM 503 A 1 HETATM 29 C C57 ZDM . . . D 3 -11.946 -27.023 -21.177 1 69.2 ? C57 ZDM 503 A 1 HETATM 30 O O61 ZDM . . . D 3 -12.198 -28.185 -21.968 1 67.64 ? O61 ZDM 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #