data_6EUM # _model_server_result.job_id zJevTUL18vrAUQAWBJi40Q _model_server_result.datetime_utc '2024-11-14 23:08:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6EUM # _exptl.entry_id 6EUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.2 _cell.angle_gamma 90 _cell.entry_id 6EUM _cell.length_a 53.18 _cell.length_b 61.44 _cell.length_c 70.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 167 A GLY 197 1_555 A N CSO 168 A CSO 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CSO 168 A CSO 198 1_555 A N LEU 169 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? metalc ? metalc1 A NE2 HIS 86 A HIS 116 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A ND1 HIS 88 A HIS 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 A OD2 ASP 90 A ASP 120 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A NE2 HIS 149 A HIS 179 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc5 A SG CSO 168 A CSO 198 1_555 B ZN ZN . A ZN 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 A NE2 HIS 210 A HIS 240 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 E S BY5 . A BY5 304 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 E O BY5 . A BY5 304 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 E S BY5 . A BY5 304 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 150 n n C1 C2 GOL sing 151 n n C1 H11 GOL sing 152 n n C1 H12 GOL sing 153 n n O1 HO1 GOL sing 154 n n C2 O2 GOL sing 155 n n C2 C3 GOL sing 156 n n C2 H2 GOL sing 157 n n O2 HO2 GOL sing 158 n n C3 O3 GOL sing 159 n n C3 H31 GOL sing 160 n n C3 H32 GOL sing 161 n n O3 HO3 GOL sing 162 n n # _atom_sites.entry_id 6EUM _atom_sites.fract_transf_matrix[1][1] 0.018804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 SO4 A 1 303 304 SO4 SO4 . E 4 BY5 A 1 304 1 BY5 XXX . F 5 GOL A 1 305 1 GOL GOL . G 5 GOL A 1 306 2 GOL GOL . H 6 HOH A 1 401 90 HOH HOH . H 6 HOH A 2 402 271 HOH HOH . H 6 HOH A 3 403 125 HOH HOH . H 6 HOH A 4 404 408 HOH HOH . H 6 HOH A 5 405 74 HOH HOH . H 6 HOH A 6 406 399 HOH HOH . H 6 HOH A 7 407 72 HOH HOH . H 6 HOH A 8 408 76 HOH HOH . H 6 HOH A 9 409 406 HOH HOH . H 6 HOH A 10 410 378 HOH HOH . H 6 HOH A 11 411 212 HOH HOH . H 6 HOH A 12 412 48 HOH HOH . H 6 HOH A 13 413 277 HOH HOH . H 6 HOH A 14 414 225 HOH HOH . H 6 HOH A 15 415 64 HOH HOH . H 6 HOH A 16 416 162 HOH HOH . H 6 HOH A 17 417 397 HOH HOH . H 6 HOH A 18 418 15 HOH HOH . H 6 HOH A 19 419 114 HOH HOH . H 6 HOH A 20 420 240 HOH HOH . H 6 HOH A 21 421 78 HOH HOH . H 6 HOH A 22 422 39 HOH HOH . H 6 HOH A 23 423 178 HOH HOH . H 6 HOH A 24 424 367 HOH HOH . H 6 HOH A 25 425 91 HOH HOH . H 6 HOH A 26 426 23 HOH HOH . H 6 HOH A 27 427 62 HOH HOH . H 6 HOH A 28 428 409 HOH HOH . H 6 HOH A 29 429 9 HOH HOH . H 6 HOH A 30 430 26 HOH HOH . H 6 HOH A 31 431 70 HOH HOH . H 6 HOH A 32 432 36 HOH HOH . H 6 HOH A 33 433 151 HOH HOH . H 6 HOH A 34 434 59 HOH HOH . H 6 HOH A 35 435 77 HOH HOH . H 6 HOH A 36 436 1 HOH HOH . H 6 HOH A 37 437 51 HOH HOH . H 6 HOH A 38 438 248 HOH HOH . H 6 HOH A 39 439 181 HOH HOH . H 6 HOH A 40 440 16 HOH HOH . H 6 HOH A 41 441 13 HOH HOH . H 6 HOH A 42 442 129 HOH HOH . H 6 HOH A 43 443 337 HOH HOH . H 6 HOH A 44 444 122 HOH HOH . H 6 HOH A 45 445 138 HOH HOH . H 6 HOH A 46 446 100 HOH HOH . H 6 HOH A 47 447 52 HOH HOH . H 6 HOH A 48 448 119 HOH HOH . H 6 HOH A 49 449 348 HOH HOH . H 6 HOH A 50 450 4 HOH HOH . H 6 HOH A 51 451 5 HOH HOH . H 6 HOH A 52 452 27 HOH HOH . H 6 HOH A 53 453 106 HOH HOH . H 6 HOH A 54 454 3 HOH HOH . H 6 HOH A 55 455 105 HOH HOH . H 6 HOH A 56 456 17 HOH HOH . H 6 HOH A 57 457 354 HOH HOH . H 6 HOH A 58 458 391 HOH HOH . H 6 HOH A 59 459 22 HOH HOH . H 6 HOH A 60 460 137 HOH HOH . H 6 HOH A 61 461 21 HOH HOH . H 6 HOH A 62 462 203 HOH HOH . H 6 HOH A 63 463 297 HOH HOH . H 6 HOH A 64 464 30 HOH HOH . H 6 HOH A 65 465 66 HOH HOH . H 6 HOH A 66 466 182 HOH HOH . H 6 HOH A 67 467 249 HOH HOH . H 6 HOH A 68 468 73 HOH HOH . H 6 HOH A 69 469 34 HOH HOH . H 6 HOH A 70 470 356 HOH HOH . H 6 HOH A 71 471 333 HOH HOH . H 6 HOH A 72 472 140 HOH HOH . H 6 HOH A 73 473 369 HOH HOH . H 6 HOH A 74 474 42 HOH HOH . H 6 HOH A 75 475 190 HOH HOH . H 6 HOH A 76 476 38 HOH HOH . H 6 HOH A 77 477 372 HOH HOH . H 6 HOH A 78 478 121 HOH HOH . H 6 HOH A 79 479 8 HOH HOH . H 6 HOH A 80 480 398 HOH HOH . H 6 HOH A 81 481 2 HOH HOH . H 6 HOH A 82 482 55 HOH HOH . H 6 HOH A 83 483 224 HOH HOH . H 6 HOH A 84 484 321 HOH HOH . H 6 HOH A 85 485 46 HOH HOH . H 6 HOH A 86 486 18 HOH HOH . H 6 HOH A 87 487 11 HOH HOH . H 6 HOH A 88 488 281 HOH HOH . H 6 HOH A 89 489 149 HOH HOH . H 6 HOH A 90 490 177 HOH HOH . H 6 HOH A 91 491 252 HOH HOH . H 6 HOH A 92 492 314 HOH HOH . H 6 HOH A 93 493 345 HOH HOH . H 6 HOH A 94 494 32 HOH HOH . H 6 HOH A 95 495 31 HOH HOH . H 6 HOH A 96 496 127 HOH HOH . H 6 HOH A 97 497 54 HOH HOH . H 6 HOH A 98 498 80 HOH HOH . H 6 HOH A 99 499 142 HOH HOH . H 6 HOH A 100 500 33 HOH HOH . H 6 HOH A 101 501 14 HOH HOH . H 6 HOH A 102 502 257 HOH HOH . H 6 HOH A 103 503 107 HOH HOH . H 6 HOH A 104 504 346 HOH HOH . H 6 HOH A 105 505 388 HOH HOH . H 6 HOH A 106 506 320 HOH HOH . H 6 HOH A 107 507 413 HOH HOH . H 6 HOH A 108 508 237 HOH HOH . H 6 HOH A 109 509 128 HOH HOH . H 6 HOH A 110 510 254 HOH HOH . H 6 HOH A 111 511 375 HOH HOH . H 6 HOH A 112 512 368 HOH HOH . H 6 HOH A 113 513 57 HOH HOH . H 6 HOH A 114 514 79 HOH HOH . H 6 HOH A 115 515 75 HOH HOH . H 6 HOH A 116 516 45 HOH HOH . H 6 HOH A 117 517 58 HOH HOH . H 6 HOH A 118 518 7 HOH HOH . H 6 HOH A 119 519 396 HOH HOH . H 6 HOH A 120 520 69 HOH HOH . H 6 HOH A 121 521 213 HOH HOH . H 6 HOH A 122 522 83 HOH HOH . H 6 HOH A 123 523 339 HOH HOH . H 6 HOH A 124 524 243 HOH HOH . H 6 HOH A 125 525 109 HOH HOH . H 6 HOH A 126 526 154 HOH HOH . H 6 HOH A 127 527 158 HOH HOH . H 6 HOH A 128 528 342 HOH HOH . H 6 HOH A 129 529 37 HOH HOH . H 6 HOH A 130 530 136 HOH HOH . H 6 HOH A 131 531 49 HOH HOH . H 6 HOH A 132 532 392 HOH HOH . H 6 HOH A 133 533 47 HOH HOH . H 6 HOH A 134 534 144 HOH HOH . H 6 HOH A 135 535 10 HOH HOH . H 6 HOH A 136 536 29 HOH HOH . H 6 HOH A 137 537 104 HOH HOH . H 6 HOH A 138 538 60 HOH HOH . H 6 HOH A 139 539 6 HOH HOH . H 6 HOH A 140 540 186 HOH HOH . H 6 HOH A 141 541 319 HOH HOH . H 6 HOH A 142 542 334 HOH HOH . H 6 HOH A 143 543 12 HOH HOH . H 6 HOH A 144 544 245 HOH HOH . H 6 HOH A 145 545 25 HOH HOH . H 6 HOH A 146 546 97 HOH HOH . H 6 HOH A 147 547 68 HOH HOH . H 6 HOH A 148 548 134 HOH HOH . H 6 HOH A 149 549 110 HOH HOH . H 6 HOH A 150 550 67 HOH HOH . H 6 HOH A 151 551 35 HOH HOH . H 6 HOH A 152 552 395 HOH HOH . H 6 HOH A 153 553 275 HOH HOH . H 6 HOH A 154 554 349 HOH HOH . H 6 HOH A 155 555 411 HOH HOH . H 6 HOH A 156 556 89 HOH HOH . H 6 HOH A 157 557 336 HOH HOH . H 6 HOH A 158 558 394 HOH HOH . H 6 HOH A 159 559 112 HOH HOH . H 6 HOH A 160 560 358 HOH HOH . H 6 HOH A 161 561 364 HOH HOH . H 6 HOH A 162 562 327 HOH HOH . H 6 HOH A 163 563 350 HOH HOH . H 6 HOH A 164 564 280 HOH HOH . H 6 HOH A 165 565 389 HOH HOH . H 6 HOH A 166 566 126 HOH HOH . H 6 HOH A 167 567 332 HOH HOH . H 6 HOH A 168 568 326 HOH HOH . H 6 HOH A 169 569 165 HOH HOH . H 6 HOH A 170 570 362 HOH HOH . H 6 HOH A 171 571 219 HOH HOH . H 6 HOH A 172 572 370 HOH HOH . H 6 HOH A 173 573 167 HOH HOH . H 6 HOH A 174 574 291 HOH HOH . H 6 HOH A 175 575 85 HOH HOH . H 6 HOH A 176 576 227 HOH HOH . H 6 HOH A 177 577 217 HOH HOH . H 6 HOH A 178 578 113 HOH HOH . H 6 HOH A 179 579 28 HOH HOH . H 6 HOH A 180 580 160 HOH HOH . H 6 HOH A 181 581 352 HOH HOH . H 6 HOH A 182 582 290 HOH HOH . H 6 HOH A 183 583 253 HOH HOH . H 6 HOH A 184 584 86 HOH HOH . H 6 HOH A 185 585 335 HOH HOH . H 6 HOH A 186 586 404 HOH HOH . H 6 HOH A 187 587 234 HOH HOH . H 6 HOH A 188 588 41 HOH HOH . H 6 HOH A 189 589 82 HOH HOH . H 6 HOH A 190 590 63 HOH HOH . H 6 HOH A 191 591 152 HOH HOH . H 6 HOH A 192 592 65 HOH HOH . H 6 HOH A 193 593 266 HOH HOH . H 6 HOH A 194 594 188 HOH HOH . H 6 HOH A 195 595 260 HOH HOH . H 6 HOH A 196 596 263 HOH HOH . H 6 HOH A 197 597 244 HOH HOH . H 6 HOH A 198 598 343 HOH HOH . H 6 HOH A 199 599 40 HOH HOH . H 6 HOH A 200 600 403 HOH HOH . H 6 HOH A 201 601 139 HOH HOH . H 6 HOH A 202 602 101 HOH HOH . H 6 HOH A 203 603 157 HOH HOH . H 6 HOH A 204 604 93 HOH HOH . H 6 HOH A 205 605 124 HOH HOH . H 6 HOH A 206 606 87 HOH HOH . H 6 HOH A 207 607 50 HOH HOH . H 6 HOH A 208 608 267 HOH HOH . H 6 HOH A 209 609 44 HOH HOH . H 6 HOH A 210 610 373 HOH HOH . H 6 HOH A 211 611 170 HOH HOH . H 6 HOH A 212 612 132 HOH HOH . H 6 HOH A 213 613 412 HOH HOH . H 6 HOH A 214 614 300 HOH HOH . H 6 HOH A 215 615 146 HOH HOH . H 6 HOH A 216 616 279 HOH HOH . H 6 HOH A 217 617 43 HOH HOH . H 6 HOH A 218 618 168 HOH HOH . H 6 HOH A 219 619 20 HOH HOH . H 6 HOH A 220 620 347 HOH HOH . H 6 HOH A 221 621 405 HOH HOH . H 6 HOH A 222 622 103 HOH HOH . H 6 HOH A 223 623 312 HOH HOH . H 6 HOH A 224 624 115 HOH HOH . H 6 HOH A 225 625 120 HOH HOH . H 6 HOH A 226 626 410 HOH HOH . H 6 HOH A 227 627 376 HOH HOH . H 6 HOH A 228 628 340 HOH HOH . H 6 HOH A 229 629 366 HOH HOH . H 6 HOH A 230 630 24 HOH HOH . H 6 HOH A 231 631 131 HOH HOH . H 6 HOH A 232 632 187 HOH HOH . H 6 HOH A 233 633 400 HOH HOH . H 6 HOH A 234 634 233 HOH HOH . H 6 HOH A 235 635 133 HOH HOH . H 6 HOH A 236 636 379 HOH HOH . H 6 HOH A 237 637 95 HOH HOH . H 6 HOH A 238 638 81 HOH HOH . H 6 HOH A 239 639 88 HOH HOH . H 6 HOH A 240 640 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 49.522 10.236 3.422 1 36.85 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 5 50.418 9.962 4.51 1 30.08 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 5 49.878 11.638 2.873 1 39.74 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 5 51.255 11.786 2.591 1 38.6 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 5 49.004 11.842 1.596 1 41.22 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 5 47.638 11.857 1.987 1 42.2 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #