data_6EUQ # _model_server_result.job_id tr9f-WME0zKGQHasW54J8g _model_server_result.datetime_utc '2025-08-21 08:11:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6euq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6EUQ # _exptl.entry_id 6EUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.3 _cell.angle_gamma 90 _cell.entry_id 6EUQ _cell.length_a 95.189 _cell.length_b 62.869 _cell.length_c 100.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 166 A HIS 166 1_555 E PR PR . A PR 504 3_455 ? C ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc2 A OE1 GLU 207 A GLU 207 1_555 D PR PR . A PR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc3 A OE1 GLU 207 A GLU 207 1_555 E PR PR . A PR 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc4 A OE2 GLU 207 A GLU 207 1_555 E PR PR . A PR 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc5 A OD1 ASP 211 A ASP 211 1_555 D PR PR . A PR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc6 A OD2 ASP 211 A ASP 211 1_555 D PR PR . A PR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc7 D PR PR . A PR 503 1_555 H O1 PGE . A PGE 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc8 D PR PR . A PR 503 1_555 M O ACT . A ACT 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc9 D PR PR . A PR 503 1_555 M OXT ACT . A ACT 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.337 ? metalc ? metalc10 D PR PR . A PR 503 1_555 O O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc11 E PR PR . A PR 504 1_555 H O1 PGE . A PGE 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc12 E PR PR . A PR 504 1_555 O O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc13 E PR PR . A PR 504 1_555 O O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 76 n n C1 O1 BNG sing 77 n n C1 O5 BNG sing 78 n n C1 H1 BNG sing 79 n n C2 C3 BNG sing 80 n n C2 O2 BNG sing 81 n n C2 H2 BNG sing 82 n n C3 C4 BNG sing 83 n n C3 O3 BNG sing 84 n n C3 H3 BNG sing 85 n n C4 C5 BNG sing 86 n n C4 O4 BNG sing 87 n n C4 H4 BNG sing 88 n n C5 C6 BNG sing 89 n n C5 O5 BNG sing 90 n n C5 H5 BNG sing 91 n n C6 O6 BNG sing 92 n n C6 H61 BNG sing 93 n n C6 H62 BNG sing 94 n n C1' C2' BNG sing 95 n n C1' O1 BNG sing 96 n n C1' "H1'1" BNG sing 97 n n C1' "H1'2" BNG sing 98 n n C2' C3' BNG sing 99 n n C2' "H2'1" BNG sing 100 n n C2' "H2'2" BNG sing 101 n n C3' C4' BNG sing 102 n n C3' "H3'1" BNG sing 103 n n C3' "H3'2" BNG sing 104 n n C4' C5' BNG sing 105 n n C4' "H4'1" BNG sing 106 n n C4' "H4'2" BNG sing 107 n n C5' C6' BNG sing 108 n n C5' "H5'1" BNG sing 109 n n C5' "H5'2" BNG sing 110 n n C6' C7' BNG sing 111 n n C6' "H6'1" BNG sing 112 n n C6' "H6'2" BNG sing 113 n n C7' C8' BNG sing 114 n n C7' "H7'1" BNG sing 115 n n C7' "H7'2" BNG sing 116 n n C8' C9' BNG sing 117 n n C8' "H8'1" BNG sing 118 n n C8' "H8'2" BNG sing 119 n n C9' "H9'1" BNG sing 120 n n C9' "H9'2" BNG sing 121 n n C9' "H9'3" BNG sing 122 n n O2 HO2 BNG sing 123 n n O3 HO3 BNG sing 124 n n O4 HO4 BNG sing 125 n n O6 HO6 BNG sing 126 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6EUQ _atom_sites.fract_transf_matrix[1][1] 0.010505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003885 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNG A 1 501 1 BNG BNG . C 3 DXC A 1 502 1 DXC DXC . D 4 PR A 1 503 1 PR PR . E 4 PR A 1 504 2 PR PR . F 5 PGE A 1 505 2 PGE PGE . G 5 PGE A 1 506 3 PGE PGE . H 5 PGE A 1 507 4 PGE PGE . I 6 OCT A 1 508 1 OCT OCT . J 6 OCT A 1 509 2 OCT OCT . K 6 OCT A 1 510 3 OCT OCT . L 7 HEX A 1 511 1 HEX HEX . M 8 ACT A 1 512 1 ACT ACT . N 9 PG4 A 1 513 1 PG4 PG4 . O 10 HOH A 1 601 7 HOH HOH . O 10 HOH A 2 602 2 HOH HOH . O 10 HOH A 3 603 36 HOH HOH . O 10 HOH A 4 604 12 HOH HOH . O 10 HOH A 5 605 17 HOH HOH . O 10 HOH A 6 606 35 HOH HOH . O 10 HOH A 7 607 23 HOH HOH . O 10 HOH A 8 608 3 HOH HOH . O 10 HOH A 9 609 4 HOH HOH . O 10 HOH A 10 610 56 HOH HOH . O 10 HOH A 11 611 20 HOH HOH . O 10 HOH A 12 612 27 HOH HOH . O 10 HOH A 13 613 31 HOH HOH . O 10 HOH A 14 614 8 HOH HOH . O 10 HOH A 15 615 39 HOH HOH . O 10 HOH A 16 616 19 HOH HOH . O 10 HOH A 17 617 58 HOH HOH . O 10 HOH A 18 618 41 HOH HOH . O 10 HOH A 19 619 59 HOH HOH . O 10 HOH A 20 620 6 HOH HOH . O 10 HOH A 21 621 33 HOH HOH . O 10 HOH A 22 622 10 HOH HOH . O 10 HOH A 23 623 24 HOH HOH . O 10 HOH A 24 624 30 HOH HOH . O 10 HOH A 25 625 11 HOH HOH . O 10 HOH A 26 626 9 HOH HOH . O 10 HOH A 27 627 48 HOH HOH . O 10 HOH A 28 628 15 HOH HOH . O 10 HOH A 29 629 14 HOH HOH . O 10 HOH A 30 630 26 HOH HOH . O 10 HOH A 31 631 22 HOH HOH . O 10 HOH A 32 632 46 HOH HOH . O 10 HOH A 33 633 5 HOH HOH . O 10 HOH A 34 634 55 HOH HOH . O 10 HOH A 35 635 21 HOH HOH . O 10 HOH A 36 636 50 HOH HOH . O 10 HOH A 37 637 42 HOH HOH . O 10 HOH A 38 638 52 HOH HOH . O 10 HOH A 39 639 13 HOH HOH . O 10 HOH A 40 640 40 HOH HOH . O 10 HOH A 41 641 51 HOH HOH . O 10 HOH A 42 642 37 HOH HOH . O 10 HOH A 43 643 16 HOH HOH . O 10 HOH A 44 644 57 HOH HOH . O 10 HOH A 45 645 49 HOH HOH . O 10 HOH A 46 646 25 HOH HOH . O 10 HOH A 47 647 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . B 2 5.534 10.531 13.549 1 67.31 ? C1 BNG 501 A 1 HETATM 2 C C2 BNG . . . B 2 4.902 11.088 14.822 1 67.67 ? C2 BNG 501 A 1 HETATM 3 C C3 BNG . . . B 2 3.595 11.813 14.512 1 67.89 ? C3 BNG 501 A 1 HETATM 4 C C4 BNG . . . B 2 3.758 12.812 13.368 1 67.99 ? C4 BNG 501 A 1 HETATM 5 C C5 BNG . . . B 2 4.504 12.204 12.181 1 67.75 ? C5 BNG 501 A 1 HETATM 6 C C6 BNG . . . B 2 4.836 13.266 11.139 1 67.73 ? C6 BNG 501 A 1 HETATM 7 C C1' BNG . . . B 2 7.315 9.099 12.841 1 66.13 ? C1' BNG 501 A 1 HETATM 8 C C2' BNG . . . B 2 8.642 8.516 13.311 1 66.3 ? C2' BNG 501 A 1 HETATM 9 C C3' BNG . . . B 2 9.349 7.747 12.2 1 66.64 ? C3' BNG 501 A 1 HETATM 10 C C4' BNG . . . B 2 10.822 7.555 12.542 1 67.05 ? C4' BNG 501 A 1 HETATM 11 C C5' BNG . . . B 2 11.551 6.755 11.465 1 67.56 ? C5' BNG 501 A 1 HETATM 12 C C6' BNG . . . B 2 13.056 7.032 11.453 1 68.02 ? C6' BNG 501 A 1 HETATM 13 C C7' BNG . . . B 2 13.879 5.748 11.378 1 68.29 ? C7' BNG 501 A 1 HETATM 14 C C8' BNG . . . B 2 15.369 6.05 11.499 1 67.97 ? C8' BNG 501 A 1 HETATM 15 C C9' BNG . . . B 2 16.203 4.798 11.335 1 67.59 ? C9' BNG 501 A 1 HETATM 16 O O1 BNG . . . B 2 6.794 9.94 13.87 1 66.56 ? O1 BNG 501 A 1 HETATM 17 O O2 BNG . . . B 2 4.657 10.027 15.751 1 67.17 ? O2 BNG 501 A 1 HETATM 18 O O3 BNG . . . B 2 3.139 12.496 15.686 1 68.35 ? O3 BNG 501 A 1 HETATM 19 O O4 BNG . . . B 2 2.461 13.245 12.945 1 68.14 ? O4 BNG 501 A 1 HETATM 20 O O5 BNG . . . B 2 5.724 11.592 12.61 1 67.66 ? O5 BNG 501 A 1 HETATM 21 O O6 BNG . . . B 2 5.436 12.641 10 1 68.55 ? O6 BNG 501 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 112 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #