data_6EUV # _model_server_result.job_id u-_XqdkarqHzyunEONsj5Q _model_server_result.datetime_utc '2024-11-16 09:31:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6euv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6EUV # _exptl.entry_id 6EUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.54 _cell.angle_beta 107.12 _cell.angle_gamma 99.11 _cell.entry_id 6EUV _cell.length_a 54.49 _cell.length_b 80.32 _cell.length_c 92.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,O 1 1 B,H,I,J,P 2 1 C,K,L,Q 3 1 D,M,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND1 HIS 39 A HIS 285 1_555 F O30 21G . A 21G 602 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.481 ? covale ? covale2 A CE1 HIS 39 A HIS 285 1_555 F C28 21G . A 21G 602 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.138 ? covale ? covale3 A NE2 HIS 39 A HIS 285 1_555 F C7 21G . A 21G 602 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.576 ? metalc ? metalc1 A ND1 HIS 186 A HIS 432 1_555 G NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 G NI NI . A NI 603 1_555 O O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 G NI NI . A NI 603 1_555 O O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NI NI . A NI 603 1_555 O O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc5 B ND1 HIS 186 C HIS 432 1_555 J NI NI . C NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 J NI NI . C NI 603 1_555 P O HOH . C HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 J NI NI . C NI 603 1_555 P O HOH . C HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc8 J NI NI . C NI 603 1_555 P O HOH . C HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc9 C ND1 HIS 186 F HIS 432 1_555 L NI NI . F NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 L NI NI . F NI 602 1_555 Q O HOH . F HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc11 D ND1 HIS 186 I HIS 432 1_555 N NI NI . I NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 N NI NI . I NI 602 1_555 R O HOH . I HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 N NI NI . I NI 602 1_555 R O HOH . I HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc14 N NI NI . I NI 602 1_555 R O HOH . I HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'C20 H19 F2 N5 O2' _chem_comp.formula_weight 399.394 _chem_comp.id 21G _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[[5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid;VX787;(2S,3S)-3-((5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl)amino)bicyclo[2.2.2]octane-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C5 21G sing 1 n y N9 C8 21G sing 2 n y N4 C5 21G sing 3 n y N4 C3 21G doub 4 n y C5 C6 21G doub 5 n y C8 C7 21G doub 6 n y C3 C2 21G sing 7 n y C6 C7 21G sing 8 n y C6 C1 21G sing 9 n y C7 C11 21G sing 10 n n C2 C1 21G doub 11 n y C2 F32 21G sing 12 n n N12 C11 21G doub 13 n y N12 C13 21G sing 14 n y C11 N16 21G sing 15 n y C13 C14 21G doub 16 n y N16 C15 21G doub 17 n y C15 C14 21G sing 18 n y C15 N17 21G sing 19 n n C14 F31 21G sing 20 n n O30 C28 21G doub 21 n n N17 C18 21G sing 22 n n C18 C25 21G sing 23 n n C18 C20 21G sing 24 n n C28 O29 21G sing 25 n n C28 C20 21G sing 26 n n C24 C25 21G sing 27 n n C24 C23 21G sing 28 n n C25 C26 21G sing 29 n n C20 C22 21G sing 30 n n C23 C22 21G sing 31 n n C26 C27 21G sing 32 n n C22 C27 21G sing 33 n n C1 H1 21G sing 34 n n C3 H2 21G sing 35 n n C8 H3 21G sing 36 n n N9 H4 21G sing 37 n n C13 H5 21G sing 38 n n N17 H6 21G sing 39 n n C18 H7 21G sing 40 n n C20 H8 21G sing 41 n n C22 H9 21G sing 42 n n C23 H10 21G sing 43 n n C23 H11 21G sing 44 n n C24 H12 21G sing 45 n n C24 H13 21G sing 46 n n C25 H14 21G sing 47 n n C26 H15 21G sing 48 n n C26 H16 21G sing 49 n n C27 H17 21G sing 50 n n C27 H18 21G sing 51 n n O29 H19 21G sing 52 n n # _atom_sites.entry_id 6EUV _atom_sites.fract_transf_matrix[1][1] 0.018352 _atom_sites.fract_transf_matrix[1][2] 0.002941 _atom_sites.fract_transf_matrix[1][3] 0.005776 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012609 _atom_sites.fract_transf_matrix[2][3] 0.000515 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 21G A 1 601 1 21G VX7 . F 2 21G A 1 602 1 21G VX7 . G 3 NI A 1 603 3 NI NI . H 2 21G C 1 601 1 21G VX7 . I 2 21G C 1 602 1 21G VX7 . J 3 NI C 1 603 1 NI NI . K 2 21G F 1 601 1 21G VX7 . L 3 NI F 1 602 4 NI NI . M 2 21G I 1 601 1 21G VX7 . N 3 NI I 1 602 2 NI NI . O 4 HOH A 1 701 49 HOH HOH . O 4 HOH A 2 702 5 HOH HOH . O 4 HOH A 3 703 37 HOH HOH . O 4 HOH A 4 704 111 HOH HOH . O 4 HOH A 5 705 25 HOH HOH . O 4 HOH A 6 706 1 HOH HOH . O 4 HOH A 7 707 91 HOH HOH . O 4 HOH A 8 708 64 HOH HOH . O 4 HOH A 9 709 27 HOH HOH . O 4 HOH A 10 710 102 HOH HOH . O 4 HOH A 11 711 6 HOH HOH . O 4 HOH A 12 712 61 HOH HOH . O 4 HOH A 13 713 84 HOH HOH . O 4 HOH A 14 714 78 HOH HOH . O 4 HOH A 15 715 89 HOH HOH . O 4 HOH A 16 716 92 HOH HOH . O 4 HOH A 17 717 97 HOH HOH . O 4 HOH A 18 718 117 HOH HOH . O 4 HOH A 19 719 20 HOH HOH . P 4 HOH C 1 701 52 HOH HOH . P 4 HOH C 2 702 40 HOH HOH . P 4 HOH C 3 703 14 HOH HOH . P 4 HOH C 4 704 12 HOH HOH . P 4 HOH C 5 705 36 HOH HOH . P 4 HOH C 6 706 2 HOH HOH . P 4 HOH C 7 707 51 HOH HOH . P 4 HOH C 8 708 68 HOH HOH . P 4 HOH C 9 709 4 HOH HOH . P 4 HOH C 10 710 63 HOH HOH . P 4 HOH C 11 711 76 HOH HOH . P 4 HOH C 12 712 81 HOH HOH . P 4 HOH C 13 713 69 HOH HOH . P 4 HOH C 14 714 8 HOH HOH . P 4 HOH C 15 715 87 HOH HOH . P 4 HOH C 16 716 70 HOH HOH . P 4 HOH C 17 717 24 HOH HOH . P 4 HOH C 18 718 99 HOH HOH . P 4 HOH C 19 719 17 HOH HOH . P 4 HOH C 20 720 60 HOH HOH . P 4 HOH C 21 721 67 HOH HOH . P 4 HOH C 22 722 23 HOH HOH . P 4 HOH C 23 723 53 HOH HOH . P 4 HOH C 24 724 35 HOH HOH . P 4 HOH C 25 725 15 HOH HOH . P 4 HOH C 26 726 34 HOH HOH . P 4 HOH C 27 727 48 HOH HOH . P 4 HOH C 28 728 82 HOH HOH . P 4 HOH C 29 729 107 HOH HOH . P 4 HOH C 30 730 44 HOH HOH . P 4 HOH C 31 731 72 HOH HOH . Q 4 HOH F 1 701 109 HOH HOH . Q 4 HOH F 2 702 66 HOH HOH . Q 4 HOH F 3 703 108 HOH HOH . Q 4 HOH F 4 704 65 HOH HOH . Q 4 HOH F 5 705 38 HOH HOH . Q 4 HOH F 6 706 86 HOH HOH . Q 4 HOH F 7 707 29 HOH HOH . Q 4 HOH F 8 708 11 HOH HOH . Q 4 HOH F 9 709 74 HOH HOH . Q 4 HOH F 10 710 47 HOH HOH . Q 4 HOH F 11 711 50 HOH HOH . Q 4 HOH F 12 712 88 HOH HOH . Q 4 HOH F 13 713 45 HOH HOH . Q 4 HOH F 14 714 106 HOH HOH . Q 4 HOH F 15 715 104 HOH HOH . Q 4 HOH F 16 716 22 HOH HOH . Q 4 HOH F 17 717 13 HOH HOH . Q 4 HOH F 18 718 31 HOH HOH . Q 4 HOH F 19 719 103 HOH HOH . Q 4 HOH F 20 720 85 HOH HOH . Q 4 HOH F 21 721 43 HOH HOH . Q 4 HOH F 22 722 32 HOH HOH . Q 4 HOH F 23 723 75 HOH HOH . Q 4 HOH F 24 724 39 HOH HOH . Q 4 HOH F 25 725 100 HOH HOH . R 4 HOH I 1 701 62 HOH HOH . R 4 HOH I 2 702 3 HOH HOH . R 4 HOH I 3 703 28 HOH HOH . R 4 HOH I 4 704 110 HOH HOH . R 4 HOH I 5 705 55 HOH HOH . R 4 HOH I 6 706 26 HOH HOH . R 4 HOH I 7 707 79 HOH HOH . R 4 HOH I 8 708 59 HOH HOH . R 4 HOH I 9 709 16 HOH HOH . R 4 HOH I 10 710 33 HOH HOH . R 4 HOH I 11 711 112 HOH HOH . R 4 HOH I 12 712 105 HOH HOH . R 4 HOH I 13 713 46 HOH HOH . R 4 HOH I 14 714 98 HOH HOH . R 4 HOH I 15 715 115 HOH HOH . R 4 HOH I 16 716 80 HOH HOH . R 4 HOH I 17 717 18 HOH HOH . R 4 HOH I 18 718 93 HOH HOH . R 4 HOH I 19 719 9 HOH HOH . R 4 HOH I 20 720 10 HOH HOH . R 4 HOH I 21 721 56 HOH HOH . R 4 HOH I 22 722 96 HOH HOH . R 4 HOH I 23 723 58 HOH HOH . R 4 HOH I 24 724 95 HOH HOH . R 4 HOH I 25 725 21 HOH HOH . R 4 HOH I 26 726 71 HOH HOH . R 4 HOH I 27 727 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 21G . . . E 2 -6.223 -147.864 141.791 1 25.22 ? C1 21G 601 A 1 HETATM 2 C C2 21G . . . E 2 -5.184 -147.95 140.868 1 25.35 ? C2 21G 601 A 1 HETATM 3 C C3 21G . . . E 2 -5.508 -147.953 139.514 1 24.66 ? C3 21G 601 A 1 HETATM 4 C C5 21G . . . E 2 -7.802 -147.763 139.979 1 24.87 ? C5 21G 601 A 1 HETATM 5 C C6 21G . . . E 2 -7.534 -147.781 141.326 1 25.12 ? C6 21G 601 A 1 HETATM 6 C C7 21G . . . E 2 -8.84 -147.653 141.977 1 25.25 ? C7 21G 601 A 1 HETATM 7 N N4 21G . . . E 2 -6.781 -147.831 139.094 1 24.9 ? N4 21G 601 A 1 HETATM 8 C C8 21G . . . E 2 -9.756 -147.606 140.924 1 24.55 ? C8 21G 601 A 1 HETATM 9 N N9 21G . . . E 2 -9.128 -147.676 139.727 1 23.09 ? N9 21G 601 A 1 HETATM 10 C C11 21G . . . E 2 -9.086 -147.572 143.443 1 27.63 ? C11 21G 601 A 1 HETATM 11 N N12 21G . . . E 2 -10.337 -147.26 143.914 1 29.84 ? N12 21G 601 A 1 HETATM 12 C C13 21G . . . E 2 -10.548 -147.181 145.256 1 30.39 ? C13 21G 601 A 1 HETATM 13 C C14 21G . . . E 2 -9.485 -147.377 146.157 1 29.78 ? C14 21G 601 A 1 HETATM 14 C C15 21G . . . E 2 -8.215 -147.678 145.657 1 28.74 ? C15 21G 601 A 1 HETATM 15 N N16 21G . . . E 2 -8.053 -147.756 144.313 1 26.94 ? N16 21G 601 A 1 HETATM 16 N N17 21G . . . E 2 -7.17 -147.878 146.512 1 29.81 ? N17 21G 601 A 1 HETATM 17 C C18 21G . . . E 2 -5.853 -148.222 146.01 1 31.81 ? C18 21G 601 A 1 HETATM 18 C C20 21G . . . E 2 -5.229 -149.24 146.974 1 33.37 ? C20 21G 601 A 1 HETATM 19 C C22 21G . . . E 2 -3.766 -148.844 147.1 1 34.69 ? C22 21G 601 A 1 HETATM 20 C C23 21G . . . E 2 -3.679 -147.539 147.903 1 35.97 ? C23 21G 601 A 1 HETATM 21 C C24 21G . . . E 2 -4.547 -146.452 147.253 1 35.41 ? C24 21G 601 A 1 HETATM 22 C C25 21G . . . E 2 -5.023 -146.958 145.9 1 33.87 ? C25 21G 601 A 1 HETATM 23 C C26 21G . . . E 2 -3.78 -147.323 145.099 1 34.86 ? C26 21G 601 A 1 HETATM 24 C C27 21G . . . E 2 -3.114 -148.542 145.751 1 35.27 ? C27 21G 601 A 1 HETATM 25 C C28 21G . . . E 2 -5.442 -150.715 146.607 1 36.06 ? C28 21G 601 A 1 HETATM 26 O O29 21G . . . E 2 -5.519 -151.555 147.532 1 35.96 ? O29 21G 601 A 1 HETATM 27 O O30 21G . . . E 2 -5.602 -151.123 145.427 1 39.11 ? O30 21G 601 A 1 HETATM 28 F F31 21G . . . E 2 -9.695 -147.302 147.488 1 28.07 ? F31 21G 601 A 1 HETATM 29 F F32 21G . . . E 2 -3.894 -148.054 141.287 1 27.25 ? F32 21G 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #