data_6EUV # _model_server_result.job_id ZAMCroXA2llntDARjJmlcA _model_server_result.datetime_utc '2024-11-16 09:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6euv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 6EUV # _exptl.entry_id 6EUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.54 _cell.angle_beta 107.12 _cell.angle_gamma 99.11 _cell.entry_id 6EUV _cell.length_a 54.49 _cell.length_b 80.32 _cell.length_c 92.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,O 1 1 B,H,I,J,P 2 1 C,K,L,Q 3 1 D,M,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 L N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND1 HIS 39 A HIS 285 1_555 F O30 21G . A 21G 602 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.481 ? covale ? covale2 A CE1 HIS 39 A HIS 285 1_555 F C28 21G . A 21G 602 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.138 ? covale ? covale3 A NE2 HIS 39 A HIS 285 1_555 F C7 21G . A 21G 602 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.576 ? metalc ? metalc1 A ND1 HIS 186 A HIS 432 1_555 G NI NI . A NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 G NI NI . A NI 603 1_555 O O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 G NI NI . A NI 603 1_555 O O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 G NI NI . A NI 603 1_555 O O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc5 B ND1 HIS 186 C HIS 432 1_555 J NI NI . C NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 J NI NI . C NI 603 1_555 P O HOH . C HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 J NI NI . C NI 603 1_555 P O HOH . C HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc8 J NI NI . C NI 603 1_555 P O HOH . C HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc9 C ND1 HIS 186 F HIS 432 1_555 L NI NI . F NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 L NI NI . F NI 602 1_555 Q O HOH . F HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc11 D ND1 HIS 186 I HIS 432 1_555 N NI NI . I NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 N NI NI . I NI 602 1_555 R O HOH . I HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 N NI NI . I NI 602 1_555 R O HOH . I HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc14 N NI NI . I NI 602 1_555 R O HOH . I HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EUV _atom_sites.fract_transf_matrix[1][1] 0.018352 _atom_sites.fract_transf_matrix[1][2] 0.002941 _atom_sites.fract_transf_matrix[1][3] 0.005776 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012609 _atom_sites.fract_transf_matrix[2][3] 0.000515 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 21G A 1 601 1 21G VX7 . F 2 21G A 1 602 1 21G VX7 . G 3 NI A 1 603 3 NI NI . H 2 21G C 1 601 1 21G VX7 . I 2 21G C 1 602 1 21G VX7 . J 3 NI C 1 603 1 NI NI . K 2 21G F 1 601 1 21G VX7 . L 3 NI F 1 602 4 NI NI . M 2 21G I 1 601 1 21G VX7 . N 3 NI I 1 602 2 NI NI . O 4 HOH A 1 701 49 HOH HOH . O 4 HOH A 2 702 5 HOH HOH . O 4 HOH A 3 703 37 HOH HOH . O 4 HOH A 4 704 111 HOH HOH . O 4 HOH A 5 705 25 HOH HOH . O 4 HOH A 6 706 1 HOH HOH . O 4 HOH A 7 707 91 HOH HOH . O 4 HOH A 8 708 64 HOH HOH . O 4 HOH A 9 709 27 HOH HOH . O 4 HOH A 10 710 102 HOH HOH . O 4 HOH A 11 711 6 HOH HOH . O 4 HOH A 12 712 61 HOH HOH . O 4 HOH A 13 713 84 HOH HOH . O 4 HOH A 14 714 78 HOH HOH . O 4 HOH A 15 715 89 HOH HOH . O 4 HOH A 16 716 92 HOH HOH . O 4 HOH A 17 717 97 HOH HOH . O 4 HOH A 18 718 117 HOH HOH . O 4 HOH A 19 719 20 HOH HOH . P 4 HOH C 1 701 52 HOH HOH . P 4 HOH C 2 702 40 HOH HOH . P 4 HOH C 3 703 14 HOH HOH . P 4 HOH C 4 704 12 HOH HOH . P 4 HOH C 5 705 36 HOH HOH . P 4 HOH C 6 706 2 HOH HOH . P 4 HOH C 7 707 51 HOH HOH . P 4 HOH C 8 708 68 HOH HOH . P 4 HOH C 9 709 4 HOH HOH . P 4 HOH C 10 710 63 HOH HOH . P 4 HOH C 11 711 76 HOH HOH . P 4 HOH C 12 712 81 HOH HOH . P 4 HOH C 13 713 69 HOH HOH . P 4 HOH C 14 714 8 HOH HOH . P 4 HOH C 15 715 87 HOH HOH . P 4 HOH C 16 716 70 HOH HOH . P 4 HOH C 17 717 24 HOH HOH . P 4 HOH C 18 718 99 HOH HOH . P 4 HOH C 19 719 17 HOH HOH . P 4 HOH C 20 720 60 HOH HOH . P 4 HOH C 21 721 67 HOH HOH . P 4 HOH C 22 722 23 HOH HOH . P 4 HOH C 23 723 53 HOH HOH . P 4 HOH C 24 724 35 HOH HOH . P 4 HOH C 25 725 15 HOH HOH . P 4 HOH C 26 726 34 HOH HOH . P 4 HOH C 27 727 48 HOH HOH . P 4 HOH C 28 728 82 HOH HOH . P 4 HOH C 29 729 107 HOH HOH . P 4 HOH C 30 730 44 HOH HOH . P 4 HOH C 31 731 72 HOH HOH . Q 4 HOH F 1 701 109 HOH HOH . Q 4 HOH F 2 702 66 HOH HOH . Q 4 HOH F 3 703 108 HOH HOH . Q 4 HOH F 4 704 65 HOH HOH . Q 4 HOH F 5 705 38 HOH HOH . Q 4 HOH F 6 706 86 HOH HOH . Q 4 HOH F 7 707 29 HOH HOH . Q 4 HOH F 8 708 11 HOH HOH . Q 4 HOH F 9 709 74 HOH HOH . Q 4 HOH F 10 710 47 HOH HOH . Q 4 HOH F 11 711 50 HOH HOH . Q 4 HOH F 12 712 88 HOH HOH . Q 4 HOH F 13 713 45 HOH HOH . Q 4 HOH F 14 714 106 HOH HOH . Q 4 HOH F 15 715 104 HOH HOH . Q 4 HOH F 16 716 22 HOH HOH . Q 4 HOH F 17 717 13 HOH HOH . Q 4 HOH F 18 718 31 HOH HOH . Q 4 HOH F 19 719 103 HOH HOH . Q 4 HOH F 20 720 85 HOH HOH . Q 4 HOH F 21 721 43 HOH HOH . Q 4 HOH F 22 722 32 HOH HOH . Q 4 HOH F 23 723 75 HOH HOH . Q 4 HOH F 24 724 39 HOH HOH . Q 4 HOH F 25 725 100 HOH HOH . R 4 HOH I 1 701 62 HOH HOH . R 4 HOH I 2 702 3 HOH HOH . R 4 HOH I 3 703 28 HOH HOH . R 4 HOH I 4 704 110 HOH HOH . R 4 HOH I 5 705 55 HOH HOH . R 4 HOH I 6 706 26 HOH HOH . R 4 HOH I 7 707 79 HOH HOH . R 4 HOH I 8 708 59 HOH HOH . R 4 HOH I 9 709 16 HOH HOH . R 4 HOH I 10 710 33 HOH HOH . R 4 HOH I 11 711 112 HOH HOH . R 4 HOH I 12 712 105 HOH HOH . R 4 HOH I 13 713 46 HOH HOH . R 4 HOH I 14 714 98 HOH HOH . R 4 HOH I 15 715 115 HOH HOH . R 4 HOH I 16 716 80 HOH HOH . R 4 HOH I 17 717 18 HOH HOH . R 4 HOH I 18 718 93 HOH HOH . R 4 HOH I 19 719 9 HOH HOH . R 4 HOH I 20 720 10 HOH HOH . R 4 HOH I 21 721 56 HOH HOH . R 4 HOH I 22 722 96 HOH HOH . R 4 HOH I 23 723 58 HOH HOH . R 4 HOH I 24 724 95 HOH HOH . R 4 HOH I 25 725 21 HOH HOH . R 4 HOH I 26 726 71 HOH HOH . R 4 HOH I 27 727 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.145 _atom_site.Cartn_y -170.999 _atom_site.Cartn_z 114.409 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 602 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #