data_6EUW # _model_server_result.job_id '_LYP6vUQlR-1AQS3KFvt4g' _model_server_result.datetime_utc '2024-11-16 09:46:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6euw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6EUW # _exptl.entry_id 6EUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EUW _cell.length_a 62.49 _cell.length_b 62.49 _cell.length_c 69.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 6EUW _atom_sites.fract_transf_matrix[1][1] 0.016003 _atom_sites.fract_transf_matrix[1][2] 0.009239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BYB A 1 501 1 BYB 787 . C 3 GOL A 1 502 1 GOL GOL . D 3 GOL A 1 503 2 GOL GOL . E 4 HOH A 1 601 84 HOH HOH . E 4 HOH A 2 602 19 HOH HOH . E 4 HOH A 3 603 167 HOH HOH . E 4 HOH A 4 604 55 HOH HOH . E 4 HOH A 5 605 53 HOH HOH . E 4 HOH A 6 606 65 HOH HOH . E 4 HOH A 7 607 26 HOH HOH . E 4 HOH A 8 608 29 HOH HOH . E 4 HOH A 9 609 126 HOH HOH . E 4 HOH A 10 610 68 HOH HOH . E 4 HOH A 11 611 72 HOH HOH . E 4 HOH A 12 612 98 HOH HOH . E 4 HOH A 13 613 40 HOH HOH . E 4 HOH A 14 614 134 HOH HOH . E 4 HOH A 15 615 3 HOH HOH . E 4 HOH A 16 616 76 HOH HOH . E 4 HOH A 17 617 18 HOH HOH . E 4 HOH A 18 618 7 HOH HOH . E 4 HOH A 19 619 13 HOH HOH . E 4 HOH A 20 620 157 HOH HOH . E 4 HOH A 21 621 16 HOH HOH . E 4 HOH A 22 622 74 HOH HOH . E 4 HOH A 23 623 180 HOH HOH . E 4 HOH A 24 624 152 HOH HOH . E 4 HOH A 25 625 67 HOH HOH . E 4 HOH A 26 626 22 HOH HOH . E 4 HOH A 27 627 147 HOH HOH . E 4 HOH A 28 628 192 HOH HOH . E 4 HOH A 29 629 11 HOH HOH . E 4 HOH A 30 630 149 HOH HOH . E 4 HOH A 31 631 1 HOH HOH . E 4 HOH A 32 632 187 HOH HOH . E 4 HOH A 33 633 59 HOH HOH . E 4 HOH A 34 634 61 HOH HOH . E 4 HOH A 35 635 60 HOH HOH . E 4 HOH A 36 636 206 HOH HOH . E 4 HOH A 37 637 108 HOH HOH . E 4 HOH A 38 638 71 HOH HOH . E 4 HOH A 39 639 73 HOH HOH . E 4 HOH A 40 640 36 HOH HOH . E 4 HOH A 41 641 14 HOH HOH . E 4 HOH A 42 642 57 HOH HOH . E 4 HOH A 43 643 25 HOH HOH . E 4 HOH A 44 644 23 HOH HOH . E 4 HOH A 45 645 56 HOH HOH . E 4 HOH A 46 646 78 HOH HOH . E 4 HOH A 47 647 122 HOH HOH . E 4 HOH A 48 648 28 HOH HOH . E 4 HOH A 49 649 91 HOH HOH . E 4 HOH A 50 650 104 HOH HOH . E 4 HOH A 51 651 212 HOH HOH . E 4 HOH A 52 652 17 HOH HOH . E 4 HOH A 53 653 2 HOH HOH . E 4 HOH A 54 654 4 HOH HOH . E 4 HOH A 55 655 10 HOH HOH . E 4 HOH A 56 656 123 HOH HOH . E 4 HOH A 57 657 101 HOH HOH . E 4 HOH A 58 658 79 HOH HOH . E 4 HOH A 59 659 51 HOH HOH . E 4 HOH A 60 660 5 HOH HOH . E 4 HOH A 61 661 88 HOH HOH . E 4 HOH A 62 662 103 HOH HOH . E 4 HOH A 63 663 37 HOH HOH . E 4 HOH A 64 664 42 HOH HOH . E 4 HOH A 65 665 111 HOH HOH . E 4 HOH A 66 666 6 HOH HOH . E 4 HOH A 67 667 63 HOH HOH . E 4 HOH A 68 668 33 HOH HOH . E 4 HOH A 69 669 46 HOH HOH . E 4 HOH A 70 670 49 HOH HOH . E 4 HOH A 71 671 148 HOH HOH . E 4 HOH A 72 672 41 HOH HOH . E 4 HOH A 73 673 77 HOH HOH . E 4 HOH A 74 674 151 HOH HOH . E 4 HOH A 75 675 35 HOH HOH . E 4 HOH A 76 676 44 HOH HOH . E 4 HOH A 77 677 120 HOH HOH . E 4 HOH A 78 678 8 HOH HOH . E 4 HOH A 79 679 24 HOH HOH . E 4 HOH A 80 680 70 HOH HOH . E 4 HOH A 81 681 43 HOH HOH . E 4 HOH A 82 682 100 HOH HOH . E 4 HOH A 83 683 95 HOH HOH . E 4 HOH A 84 684 15 HOH HOH . E 4 HOH A 85 685 9 HOH HOH . E 4 HOH A 86 686 92 HOH HOH . E 4 HOH A 87 687 112 HOH HOH . E 4 HOH A 88 688 38 HOH HOH . E 4 HOH A 89 689 31 HOH HOH . E 4 HOH A 90 690 27 HOH HOH . E 4 HOH A 91 691 12 HOH HOH . E 4 HOH A 92 692 93 HOH HOH . E 4 HOH A 93 693 69 HOH HOH . E 4 HOH A 94 694 102 HOH HOH . E 4 HOH A 95 695 96 HOH HOH . E 4 HOH A 96 696 47 HOH HOH . E 4 HOH A 97 697 34 HOH HOH . E 4 HOH A 98 698 39 HOH HOH . E 4 HOH A 99 699 32 HOH HOH . E 4 HOH A 100 700 20 HOH HOH . E 4 HOH A 101 701 94 HOH HOH . E 4 HOH A 102 702 116 HOH HOH . E 4 HOH A 103 703 119 HOH HOH . E 4 HOH A 104 704 30 HOH HOH . E 4 HOH A 105 705 48 HOH HOH . E 4 HOH A 106 706 176 HOH HOH . E 4 HOH A 107 707 164 HOH HOH . E 4 HOH A 108 708 125 HOH HOH . E 4 HOH A 109 709 66 HOH HOH . E 4 HOH A 110 710 52 HOH HOH . E 4 HOH A 111 711 213 HOH HOH . E 4 HOH A 112 712 146 HOH HOH . E 4 HOH A 113 713 202 HOH HOH . E 4 HOH A 114 714 64 HOH HOH . E 4 HOH A 115 715 128 HOH HOH . E 4 HOH A 116 716 132 HOH HOH . E 4 HOH A 117 717 139 HOH HOH . E 4 HOH A 118 718 143 HOH HOH . E 4 HOH A 119 719 114 HOH HOH . E 4 HOH A 120 720 58 HOH HOH . E 4 HOH A 121 721 127 HOH HOH . E 4 HOH A 122 722 131 HOH HOH . E 4 HOH A 123 723 183 HOH HOH . E 4 HOH A 124 724 160 HOH HOH . E 4 HOH A 125 725 75 HOH HOH . E 4 HOH A 126 726 174 HOH HOH . E 4 HOH A 127 727 163 HOH HOH . E 4 HOH A 128 728 172 HOH HOH . E 4 HOH A 129 729 191 HOH HOH . E 4 HOH A 130 730 150 HOH HOH . E 4 HOH A 131 731 179 HOH HOH . E 4 HOH A 132 732 106 HOH HOH . E 4 HOH A 133 733 135 HOH HOH . E 4 HOH A 134 734 86 HOH HOH . E 4 HOH A 135 735 173 HOH HOH . E 4 HOH A 136 736 99 HOH HOH . E 4 HOH A 137 737 83 HOH HOH . E 4 HOH A 138 738 107 HOH HOH . E 4 HOH A 139 739 168 HOH HOH . E 4 HOH A 140 740 82 HOH HOH . E 4 HOH A 141 741 109 HOH HOH . E 4 HOH A 142 742 85 HOH HOH . E 4 HOH A 143 743 80 HOH HOH . E 4 HOH A 144 744 81 HOH HOH . E 4 HOH A 145 745 130 HOH HOH . E 4 HOH A 146 746 211 HOH HOH . E 4 HOH A 147 747 113 HOH HOH . E 4 HOH A 148 748 97 HOH HOH . E 4 HOH A 149 749 87 HOH HOH . E 4 HOH A 150 750 203 HOH HOH . E 4 HOH A 151 751 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 14.88 -25.609 9.437 1 34.28 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 3 14.691 -26.372 8.278 1 37.41 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 3 15.969 -24.632 9.116 1 31.29 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 3 15.365 -23.38 8.763 1 37.88 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 3 16.786 -24.479 10.368 1 30.24 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 3 17.571 -23.318 10.182 1 27.87 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #