data_6EV0 # _model_server_result.job_id QbrPUDaQ3zGou9xFEZpN0g _model_server_result.datetime_utc '2025-01-11 04:57:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ev0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6EV0 # _exptl.entry_id 6EV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{R})-3-carboxy-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridin-8-yl]-dimethyl-azanium' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.93 _cell.angle_gamma 90 _cell.entry_id 6EV0 _cell.length_a 56.734 _cell.length_b 80.514 _cell.length_c 62.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H21 N2 O3 S 1' _chem_comp.formula_weight 381.468 _chem_comp.id BYK _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R})-3-carboxy-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridin-8-yl]-dimethyl-azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 BYK doub 70 n y C19 C18 BYK sing 71 n y C20 C21 BYK sing 72 n y C17 C18 BYK doub 73 n y C17 C16 BYK sing 74 n y C18 C23 BYK sing 75 n y C21 C22 BYK doub 76 n y C16 C15 BYK doub 77 n y C23 C22 BYK sing 78 n y C23 C14 BYK doub 79 n y O26 C25 BYK doub 80 n n C15 C14 BYK sing 81 n y C14 C13 BYK sing 82 n n C24 C25 BYK sing 83 n n C24 C12 BYK doub 84 n n C25 N27 BYK sing 85 n n O03 C02 BYK doub 86 n n O01 C02 BYK sing 87 n n C02 C04 BYK sing 88 n n C13 C12 BYK sing 89 n n C12 C08 BYK sing 90 n n N27 C04 BYK sing 91 n n N27 C07 BYK sing 92 n n C04 C05 BYK sing 93 n n C08 C07 BYK doub 94 n n C08 N09 BYK sing 95 n n C07 S06 BYK sing 96 n n C05 S06 BYK sing 97 n n N09 C10 BYK sing 98 n n N09 C11 BYK sing 99 n n O01 H1 BYK sing 100 n n C04 H041 BYK sing 101 n n C05 H052 BYK sing 102 n n C05 H051 BYK sing 103 n n C10 H102 BYK sing 104 n n C10 H101 BYK sing 105 n n C10 H103 BYK sing 106 n n C11 H112 BYK sing 107 n n C11 H113 BYK sing 108 n n C11 H111 BYK sing 109 n n C13 H131 BYK sing 110 n n C13 H132 BYK sing 111 n n C15 H151 BYK sing 112 n n C16 H161 BYK sing 113 n n C17 H171 BYK sing 114 n n C19 H191 BYK sing 115 n n C20 H201 BYK sing 116 n n C21 H211 BYK sing 117 n n C22 H221 BYK sing 118 n n C24 H241 BYK sing 119 n n N09 H091 BYK sing 120 n n # _atom_sites.entry_id 6EV0 _atom_sites.fract_transf_matrix[1][1] 0.017626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BYK A 1 301 301 BYK BYK . D 3 IPA A 1 302 302 IPA IPA . E 2 BYK B 1 301 301 BYK BYK . F 4 C8N B 1 302 302 C8N C8N . G 3 IPA B 1 303 303 IPA IPA . H 5 HOH A 1 401 401 HOH HOH . H 5 HOH A 2 402 402 HOH HOH . H 5 HOH A 3 403 403 HOH HOH . H 5 HOH A 4 404 404 HOH HOH . H 5 HOH A 5 405 405 HOH HOH . H 5 HOH A 6 406 406 HOH HOH . H 5 HOH A 7 407 407 HOH HOH . H 5 HOH A 8 408 408 HOH HOH . H 5 HOH A 9 409 409 HOH HOH . H 5 HOH A 10 410 410 HOH HOH . H 5 HOH A 11 411 411 HOH HOH . H 5 HOH A 12 412 412 HOH HOH . H 5 HOH A 13 413 413 HOH HOH . H 5 HOH A 14 414 414 HOH HOH . H 5 HOH A 15 415 415 HOH HOH . I 5 HOH B 1 401 401 HOH HOH . I 5 HOH B 2 402 402 HOH HOH . I 5 HOH B 3 403 403 HOH HOH . I 5 HOH B 4 404 404 HOH HOH . I 5 HOH B 5 405 405 HOH HOH . I 5 HOH B 6 406 406 HOH HOH . I 5 HOH B 7 407 407 HOH HOH . I 5 HOH B 8 408 408 HOH HOH . I 5 HOH B 9 409 409 HOH HOH . I 5 HOH B 10 410 410 HOH HOH . I 5 HOH B 11 411 411 HOH HOH . I 5 HOH B 12 412 412 HOH HOH . I 5 HOH B 13 413 413 HOH HOH . I 5 HOH B 14 414 414 HOH HOH . I 5 HOH B 15 415 415 HOH HOH . I 5 HOH B 16 416 416 HOH HOH . I 5 HOH B 17 417 417 HOH HOH . I 5 HOH B 18 418 418 HOH HOH . I 5 HOH B 19 419 419 HOH HOH . I 5 HOH B 20 420 420 HOH HOH . I 5 HOH B 21 421 421 HOH HOH . I 5 HOH B 22 422 422 HOH HOH . I 5 HOH B 23 423 423 HOH HOH . I 5 HOH B 24 424 424 HOH HOH . I 5 HOH B 25 425 425 HOH HOH . I 5 HOH B 26 426 426 HOH HOH . I 5 HOH B 27 427 427 HOH HOH . I 5 HOH B 28 428 428 HOH HOH . I 5 HOH B 29 429 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 BYK . . . E 2 48.503 -5.872 70.888 0.84 87.84 ? O01 BYK 301 B 1 HETATM 2 C C02 BYK . . . E 2 47.524 -5.488 70.221 0.84 77.96 ? C02 BYK 301 B 1 HETATM 3 O O03 BYK . . . E 2 46.863 -4.455 70.424 0.84 62.72 ? O03 BYK 301 B 1 HETATM 4 C C04 BYK . . . E 2 47.128 -6.391 69.059 0.84 70.18 ? C04 BYK 301 B 1 HETATM 5 C C05 BYK . . . E 2 48.08 -6.229 67.88 0.84 65.71 ? C05 BYK 301 B 1 HETATM 6 S S06 BYK . . . E 2 47.279 -5.061 66.741 0.84 55.75 ? S06 BYK 301 B 1 HETATM 7 C C07 BYK . . . E 2 45.679 -5.398 67.38 0.84 46.92 ? C07 BYK 301 B 1 HETATM 8 C C08 BYK . . . E 2 44.436 -5.086 66.851 0.84 53.99 ? C08 BYK 301 B 1 HETATM 9 N N09 BYK . . . E 2 44.337 -4.389 65.606 0.84 59.71 ? N09 BYK 301 B 1 HETATM 10 C C10 BYK . . . E 2 44.535 -2.944 65.681 0.84 53.64 ? C10 BYK 301 B 1 HETATM 11 C C11 BYK . . . E 2 45.09 -4.975 64.493 0.84 52.65 ? C11 BYK 301 B 1 HETATM 12 C C12 BYK . . . E 2 43.251 -5.474 67.573 0.84 70.94 ? C12 BYK 301 B 1 HETATM 13 C C13 BYK . . . E 2 41.928 -5.1 66.936 0.84 70.15 ? C13 BYK 301 B 1 HETATM 14 C C14 BYK . . . E 2 40.795 -6.029 67.36 0.84 67.41 ? C14 BYK 301 B 1 HETATM 15 C C15 BYK . . . E 2 40.595 -7.208 66.702 0.84 62.81 ? C15 BYK 301 B 1 HETATM 16 C C16 BYK . . . E 2 39.567 -8.125 67.033 0.84 68.31 ? C16 BYK 301 B 1 HETATM 17 C C17 BYK . . . E 2 38.706 -7.839 68.071 0.84 81.32 ? C17 BYK 301 B 1 HETATM 18 C C18 BYK . . . E 2 38.861 -6.634 68.792 0.84 65.63 ? C18 BYK 301 B 1 HETATM 19 C C19 BYK . . . E 2 37.994 -6.31 69.864 0.84 65.51 ? C19 BYK 301 B 1 HETATM 20 C C20 BYK . . . E 2 38.16 -5.129 70.556 0.84 63.17 ? C20 BYK 301 B 1 HETATM 21 C C21 BYK . . . E 2 39.193 -4.231 70.207 0.84 75.13 ? C21 BYK 301 B 1 HETATM 22 C C22 BYK . . . E 2 40.048 -4.527 69.167 0.84 74.99 ? C22 BYK 301 B 1 HETATM 23 C C23 BYK . . . E 2 39.905 -5.735 68.432 0.84 67.58 ? C23 BYK 301 B 1 HETATM 24 C C24 BYK . . . E 2 43.317 -6.137 68.76 0.84 57.24 ? C24 BYK 301 B 1 HETATM 25 C C25 BYK . . . E 2 44.618 -6.469 69.322 0.84 60.25 ? C25 BYK 301 B 1 HETATM 26 O O26 BYK . . . E 2 44.73 -7.068 70.392 0.84 51.6 ? O26 BYK 301 B 1 HETATM 27 N N27 BYK . . . E 2 45.769 -6.074 68.589 0.84 55.88 ? N27 BYK 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #