data_6EV0 # _model_server_result.job_id SCJq7_3IJ8uiejAeVNCnZg _model_server_result.datetime_utc '2025-01-25 19:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ev0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6EV0 # _exptl.entry_id 6EV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.468 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{S})-3-carboxy-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridin-8-yl]-dimethyl-azanium' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.93 _cell.angle_gamma 90 _cell.entry_id 6EV0 _cell.length_a 56.734 _cell.length_b 80.514 _cell.length_c 62.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H21 N2 O3 S 1' _chem_comp.formula_weight 381.468 _chem_comp.id C8N _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{S})-3-carboxy-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridin-8-yl]-dimethyl-azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 C8N doub 121 n n O01 C02 C8N sing 122 n n C02 C04 C8N sing 123 n n O26 C25 C8N doub 124 n n C04 C05 C8N sing 125 n n C04 N27 C8N sing 126 n n C05 S06 C8N sing 127 n n C25 N27 C8N sing 128 n n C25 C24 C8N sing 129 n n N27 C07 C8N sing 130 n n C24 C12 C8N doub 131 n n S06 C07 C8N sing 132 n n C07 C08 C8N doub 133 n n C12 C08 C8N sing 134 n n C12 C13 C8N sing 135 n n C08 N09 C8N sing 136 n n C13 C14 C8N sing 137 n n C11 N09 C8N sing 138 n n N09 C10 C8N sing 139 n n C15 C14 C8N doub 140 n y C15 C16 C8N sing 141 n y C14 C23 C8N sing 142 n y C16 C17 C8N doub 143 n y C23 C22 C8N doub 144 n y C23 C18 C8N sing 145 n y C17 C18 C8N sing 146 n y C22 C21 C8N sing 147 n y C18 C19 C8N doub 148 n y C21 C20 C8N doub 149 n y C19 C20 C8N sing 150 n y O01 H1 C8N sing 151 n n C04 H041 C8N sing 152 n n C05 H052 C8N sing 153 n n C05 H051 C8N sing 154 n n C10 H101 C8N sing 155 n n C10 H103 C8N sing 156 n n C10 H102 C8N sing 157 n n C11 H112 C8N sing 158 n n C11 H113 C8N sing 159 n n C11 H111 C8N sing 160 n n C13 H132 C8N sing 161 n n C13 H131 C8N sing 162 n n C15 H151 C8N sing 163 n n C16 H161 C8N sing 164 n n C17 H171 C8N sing 165 n n C19 H191 C8N sing 166 n n C20 H201 C8N sing 167 n n C21 H211 C8N sing 168 n n C22 H221 C8N sing 169 n n C24 H241 C8N sing 170 n n N09 H091 C8N sing 171 n n # _atom_sites.entry_id 6EV0 _atom_sites.fract_transf_matrix[1][1] 0.017626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BYK A 1 301 301 BYK BYK . D 3 IPA A 1 302 302 IPA IPA . E 2 BYK B 1 301 301 BYK BYK . F 4 C8N B 1 302 302 C8N C8N . G 3 IPA B 1 303 303 IPA IPA . H 5 HOH A 1 401 401 HOH HOH . H 5 HOH A 2 402 402 HOH HOH . H 5 HOH A 3 403 403 HOH HOH . H 5 HOH A 4 404 404 HOH HOH . H 5 HOH A 5 405 405 HOH HOH . H 5 HOH A 6 406 406 HOH HOH . H 5 HOH A 7 407 407 HOH HOH . H 5 HOH A 8 408 408 HOH HOH . H 5 HOH A 9 409 409 HOH HOH . H 5 HOH A 10 410 410 HOH HOH . H 5 HOH A 11 411 411 HOH HOH . H 5 HOH A 12 412 412 HOH HOH . H 5 HOH A 13 413 413 HOH HOH . H 5 HOH A 14 414 414 HOH HOH . H 5 HOH A 15 415 415 HOH HOH . I 5 HOH B 1 401 401 HOH HOH . I 5 HOH B 2 402 402 HOH HOH . I 5 HOH B 3 403 403 HOH HOH . I 5 HOH B 4 404 404 HOH HOH . I 5 HOH B 5 405 405 HOH HOH . I 5 HOH B 6 406 406 HOH HOH . I 5 HOH B 7 407 407 HOH HOH . I 5 HOH B 8 408 408 HOH HOH . I 5 HOH B 9 409 409 HOH HOH . I 5 HOH B 10 410 410 HOH HOH . I 5 HOH B 11 411 411 HOH HOH . I 5 HOH B 12 412 412 HOH HOH . I 5 HOH B 13 413 413 HOH HOH . I 5 HOH B 14 414 414 HOH HOH . I 5 HOH B 15 415 415 HOH HOH . I 5 HOH B 16 416 416 HOH HOH . I 5 HOH B 17 417 417 HOH HOH . I 5 HOH B 18 418 418 HOH HOH . I 5 HOH B 19 419 419 HOH HOH . I 5 HOH B 20 420 420 HOH HOH . I 5 HOH B 21 421 421 HOH HOH . I 5 HOH B 22 422 422 HOH HOH . I 5 HOH B 23 423 423 HOH HOH . I 5 HOH B 24 424 424 HOH HOH . I 5 HOH B 25 425 425 HOH HOH . I 5 HOH B 26 426 426 HOH HOH . I 5 HOH B 27 427 427 HOH HOH . I 5 HOH B 28 428 428 HOH HOH . I 5 HOH B 29 429 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 C8N . . . F 4 43.15 -6.66 46.095 0.89 83.61 ? O01 C8N 302 B 1 HETATM 2 C C02 C8N . . . F 4 42.735 -7.784 46.428 0.89 94.59 ? C02 C8N 302 B 1 HETATM 3 O O03 C8N . . . F 4 42.025 -8.536 45.734 0.89 89.3 ? O03 C8N 302 B 1 HETATM 4 C C04 C8N . . . F 4 43.108 -8.321 47.805 0.89 88.85 ? C04 C8N 302 B 1 HETATM 5 C C05 C8N . . . F 4 44.548 -7.969 48.159 0.89 82.39 ? C05 C8N 302 B 1 HETATM 6 S S06 C8N . . . F 4 44.576 -7.67 49.951 0.89 69.93 ? S06 C8N 302 B 1 HETATM 7 C C07 C8N . . . F 4 42.853 -7.341 50.015 0.89 73.83 ? C07 C8N 302 B 1 HETATM 8 C C08 C8N . . . F 4 42.107 -6.755 51.026 0.89 65.81 ? C08 C8N 302 B 1 HETATM 9 N N09 C8N . . . F 4 42.746 -6.323 52.231 0.89 56.14 ? N09 C8N 302 B 1 HETATM 10 C C10 C8N . . . F 4 43.01 -7.374 53.21 0.89 66.34 ? C10 C8N 302 B 1 HETATM 11 C C11 C8N . . . F 4 43.913 -5.455 52.05 0.89 56.16 ? C11 C8N 302 B 1 HETATM 12 C C12 C8N . . . F 4 40.686 -6.588 50.848 0.89 67.27 ? C12 C8N 302 B 1 HETATM 13 C C13 C8N . . . F 4 39.937 -5.94 51.995 0.89 42.63 ? C13 C8N 302 B 1 HETATM 14 C C14 C8N . . . F 4 39.208 -6.96 52.863 0.89 51.6 ? C14 C8N 302 B 1 HETATM 15 C C15 C8N . . . F 4 38.193 -7.706 52.336 0.89 48.29 ? C15 C8N 302 B 1 HETATM 16 C C16 C8N . . . F 4 37.466 -8.673 53.073 0.89 49.77 ? C16 C8N 302 B 1 HETATM 17 C C17 C8N . . . F 4 37.777 -8.895 54.398 0.89 52.71 ? C17 C8N 302 B 1 HETATM 18 C C18 C8N . . . F 4 38.818 -8.155 55.002 0.89 45.61 ? C18 C8N 302 B 1 HETATM 19 C C19 C8N . . . F 4 39.162 -8.36 56.361 0.89 57.71 ? C19 C8N 302 B 1 HETATM 20 C C20 C8N . . . F 4 40.181 -7.627 56.934 0.89 80.49 ? C20 C8N 302 B 1 HETATM 21 C C21 C8N . . . F 4 40.891 -6.669 56.178 0.89 63.05 ? C21 C8N 302 B 1 HETATM 22 C C22 C8N . . . F 4 40.571 -6.455 54.855 0.89 57.3 ? C22 C8N 302 B 1 HETATM 23 C C23 C8N . . . F 4 39.527 -7.191 54.231 0.89 62.68 ? C23 C8N 302 B 1 HETATM 24 C C24 C8N . . . F 4 40.059 -6.992 49.709 0.89 68.91 ? C24 C8N 302 B 1 HETATM 25 C C25 C8N . . . F 4 40.832 -7.608 48.64 0.89 72.74 ? C25 C8N 302 B 1 HETATM 26 O O26 C8N . . . F 4 40.304 -7.988 47.595 0.89 79.06 ? O26 C8N 302 B 1 HETATM 27 N N27 C8N . . . F 4 42.231 -7.758 48.846 0.89 80.28 ? N27 C8N 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #