data_6EVK
#
_model_server_result.job_id            lIW-GeymV7G2pN3Jmbx8pw 
_model_server_result.datetime_utc      '2024-11-16 09:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6evk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":901}' 
#
_entry.id    6EVK 
#
_exptl.entry_id    6EVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.215 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.17 
_cell.angle_gamma         90 
_cell.entry_id            6EVK 
_cell.length_a            269.34 
_cell.length_b            148.7 
_cell.length_c            88.51 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 D N3 C 5 R C 5 1_555 E N1 G 15 V G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 D N4 C 5 R C 5 1_555 E O6 G 15 V G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 D O2 C 5 R C 5 1_555 E N2 G 15 V G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 D N3 C 6 R C 6 1_555 E N1 G 14 V G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 D N4 C 6 R C 6 1_555 E O6 G 14 V G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 D O2 C 6 R C 6 1_555 E N2 G 14 V G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 D N3 U 7 R U 7 1_555 E N1 A 13 V A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 D O4 U 7 R U 7 1_555 E N6 A 13 V A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 D N3 C 8 R C 8 1_555 E N1 G 12 V G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 D N4 C 8 R C 8 1_555 E O6 G 12 V G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 D O2 C 8 R C 8 1_555 E N2 G 12 V G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 D N3 U 9 R U 9 1_555 E N1 A 11 V A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 D O4 U 9 R U 9 1_555 E N6 A 11 V A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-A MISPAIR' hydrog14 E N6 A 1 V A 1 1_555 E N3 A 10 V A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 E N1 G 2 V G 2 1_555 E N3 C 9 V C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 E N2 G 2 V G 2 1_555 E O2 C 9 V C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 E O6 G 2 V G 2 1_555 E N4 C 9 V C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 E N3 U 3 V U 3 1_555 E N1 A 8 V A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 E O4 U 3 V U 3 1_555 E N6 A 8 V A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-A MISPAIR' hydrog20 E N3 A 4 V A 4 1_555 E N6 A 7 V A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-A MISPAIR' hydrog21 E N3 A 4 V A 4 1_555 E N6 A 8 V A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C11 H19 N5 O14 P3 1' 
_chem_comp.formula_weight    538.215 
_chem_comp.id                MGP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A MGP sing 352 n n 
PA O2A MGP doub 353 n n 
PA O3A MGP sing 354 n n 
PA O5' MGP sing 355 n n 
O3A PB MGP sing 356 n n 
O5' C5' MGP sing 357 n n 
PB O1B MGP sing 358 n n 
PB O2B MGP doub 359 n n 
PB O3B MGP sing 360 n n 
O3B PC MGP sing 361 n n 
PC O1C MGP sing 362 n n 
PC O2C MGP doub 363 n n 
PC O3C MGP sing 364 n n 
C5' C4' MGP sing 365 n n 
C5' H5' MGP sing 366 n n 
C5' "H5'A" MGP sing 367 n n 
C4' O4' MGP sing 368 n n 
C4' C3' MGP sing 369 n n 
C4' H4' MGP sing 370 n n 
O4' C1' MGP sing 371 n n 
C3' O3' MGP sing 372 n n 
C3' C2' MGP sing 373 n n 
C3' H3' MGP sing 374 n n 
O3' HO3' MGP sing 375 n n 
C2' O2' MGP sing 376 n n 
C2' C1' MGP sing 377 n n 
C2' H2' MGP sing 378 n n 
O2' HO2' MGP sing 379 n n 
C1' N9 MGP sing 380 n n 
C1' H1' MGP sing 381 n n 
N9 C8 MGP sing 382 n y 
N9 C4 MGP sing 383 n y 
C8 N7 MGP doub 384 n y 
C8 H8 MGP sing 385 n n 
N7 CM7 MGP sing 386 n n 
N7 C5 MGP sing 387 n y 
CM7 HM7 MGP sing 388 n n 
CM7 HM7A MGP sing 389 n n 
CM7 HM7B MGP sing 390 n n 
C5 C6 MGP sing 391 n n 
C5 C4 MGP doub 392 n y 
C6 O6 MGP doub 393 n n 
C6 N1 MGP sing 394 n n 
N1 C2 MGP sing 395 n n 
N1 HN1 MGP sing 396 n n 
C2 N2 MGP sing 397 n n 
C2 N3 MGP doub 398 n n 
N2 HN2 MGP sing 399 n n 
N2 HN2A MGP sing 400 n n 
N3 C4 MGP sing 401 n n 
O1A H16 MGP sing 402 n n 
O1B H17 MGP sing 403 n n 
O1C H18 MGP sing 404 n n 
O3C H19 MGP sing 405 n n 
#
_atom_sites.entry_id                     6EVK 
_atom_sites.fract_transf_matrix[1][1]    0.003713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000533 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 ZN A 1 801 1 ZN ZN . 
G 7 PO4 A 1 802 1 PO4 PO4 . 
H 7 PO4 A 1 803 2 PO4 PO4 . 
I 7 PO4 A 1 804 8 PO4 PO4 . 
J 7 PO4 A 1 805 11 PO4 PO4 . 
K 7 PO4 B 1 801 3 PO4 PO4 . 
L 7 PO4 B 1 802 4 PO4 PO4 . 
M 7 PO4 B 1 803 5 PO4 PO4 . 
N 7 PO4 B 1 804 9 PO4 PO4 . 
O 7 PO4 B 1 805 12 PO4 PO4 . 
P 7 PO4 B 1 806 13 PO4 PO4 . 
Q 8 MGP C 1 901 2 MGP MGT . 
R 7 PO4 C 1 902 7 PO4 PO4 . 
S 7 PO4 C 1 903 10 PO4 PO4 . 
T 9 HOH A 1 901 38 HOH HOH . 
T 9 HOH A 2 902 59 HOH HOH . 
T 9 HOH A 3 903 6 HOH HOH . 
T 9 HOH A 4 904 5 HOH HOH . 
T 9 HOH A 5 905 2 HOH HOH . 
T 9 HOH A 6 906 7 HOH HOH . 
T 9 HOH A 7 907 53 HOH HOH . 
U 9 HOH B 1 901 39 HOH HOH . 
U 9 HOH B 2 902 29 HOH HOH . 
U 9 HOH B 3 903 31 HOH HOH . 
U 9 HOH B 4 904 14 HOH HOH . 
U 9 HOH B 5 905 3 HOH HOH . 
U 9 HOH B 6 906 26 HOH HOH . 
U 9 HOH B 7 907 58 HOH HOH . 
U 9 HOH B 8 908 15 HOH HOH . 
U 9 HOH B 9 909 54 HOH HOH . 
U 9 HOH B 10 910 43 HOH HOH . 
U 9 HOH B 11 911 9 HOH HOH . 
U 9 HOH B 12 912 18 HOH HOH . 
U 9 HOH B 13 913 25 HOH HOH . 
U 9 HOH B 14 914 16 HOH HOH . 
U 9 HOH B 15 915 51 HOH HOH . 
U 9 HOH B 16 916 17 HOH HOH . 
V 9 HOH C 1 1001 55 HOH HOH . 
V 9 HOH C 2 1002 21 HOH HOH . 
V 9 HOH C 3 1003 34 HOH HOH . 
V 9 HOH C 4 1004 23 HOH HOH . 
V 9 HOH C 5 1005 56 HOH HOH . 
V 9 HOH C 6 1006 22 HOH HOH . 
V 9 HOH C 7 1007 10 HOH HOH . 
V 9 HOH C 8 1008 11 HOH HOH . 
V 9 HOH C 9 1009 20 HOH HOH . 
V 9 HOH C 10 1010 35 HOH HOH . 
V 9 HOH C 11 1011 12 HOH HOH . 
W 9 HOH R 1 101 8 HOH HOH . 
X 9 HOH V 1 101 41 HOH HOH . 
X 9 HOH V 2 102 4 HOH HOH . 
X 9 HOH V 3 103 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA MGP . . . Q 8 817.649 -51.408 442.306 1 127.57 ? PA MGP 901 C 1 
HETATM 2 O O1A MGP . . . Q 8 816.843 -50.662 443.345 1 117.01 ? O1A MGP 901 C 1 
HETATM 3 O O2A MGP . . . Q 8 817.196 -51.425 440.86 1 121.47 ? O2A MGP 901 C 1 
HETATM 4 O O3A MGP . . . Q 8 817.926 -52.927 442.776 1 136.36 ? O3A MGP 901 C 1 
HETATM 5 O O5' MGP . . . Q 8 819.178 -50.899 442.381 1 114.98 ? O5' MGP 901 C 1 
HETATM 6 P PB MGP . . . Q 8 816.859 -54.129 442.861 1 146.96 ? PB MGP 901 C 1 
HETATM 7 O O1B MGP . . . Q 8 815.741 -53.852 441.881 1 145.79 ? O1B MGP 901 C 1 
HETATM 8 O O2B MGP . . . Q 8 817.626 -55.428 442.749 1 141.02 ? O2B MGP 901 C 1 
HETATM 9 O O3B MGP . . . Q 8 816.292 -53.979 444.373 1 155.9 ? O3B MGP 901 C 1 
HETATM 10 P PC MGP . . . Q 8 817.214 -53.777 445.693 1 163.55 ? PC MGP 901 C 1 
HETATM 11 O O1C MGP . . . Q 8 816.286 -54.114 446.836 1 160.32 ? O1C MGP 901 C 1 
HETATM 12 O O2C MGP . . . Q 8 817.634 -52.324 445.68 1 161.61 ? O2C MGP 901 C 1 
HETATM 13 O O3C MGP . . . Q 8 818.352 -54.759 445.53 1 160.39 ? O3C MGP 901 C 1 
HETATM 14 C C5' MGP . . . Q 8 820.142 -51.461 441.486 1 106.29 ? C5' MGP 901 C 1 
HETATM 15 C C4' MGP . . . Q 8 821.36 -52.043 442.201 1 98.33 ? C4' MGP 901 C 1 
HETATM 16 O O4' MGP . . . Q 8 821.946 -51.05 443.033 1 93.54 ? O4' MGP 901 C 1 
HETATM 17 C C3' MGP . . . Q 8 821.092 -53.231 443.115 1 95.34 ? C3' MGP 901 C 1 
HETATM 18 O O3' MGP . . . Q 8 822.115 -54.204 442.884 1 95.64 ? O3' MGP 901 C 1 
HETATM 19 C C2' MGP . . . Q 8 821.166 -52.664 444.526 1 91.88 ? C2' MGP 901 C 1 
HETATM 20 O O2' MGP . . . Q 8 821.627 -53.59 445.511 1 94.07 ? O2' MGP 901 C 1 
HETATM 21 C C1' MGP . . . Q 8 822.199 -51.592 444.332 1 86.79 ? C1' MGP 901 C 1 
HETATM 22 N N9 MGP . . . Q 8 822.229 -50.494 445.322 1 79.76 ? N9 MGP 901 C 1 
HETATM 23 C C8 MGP . . . Q 8 821.164 -49.489 445.231 1 77.69 ? C8 MGP 901 C 1 
HETATM 24 N N7 MGP . . . Q 8 821.651 -48.636 446.313 1 75.47 ? N7 MGP 901 C 1 
HETATM 25 C CM7 MGP . . . Q 8 820.789 -47.449 446.556 1 75.18 ? CM7 MGP 901 C 1 
HETATM 26 C C5 MGP . . . Q 8 822.769 -49.055 446.904 1 74.8 ? C5 MGP 901 C 1 
HETATM 27 C C6 MGP . . . Q 8 823.611 -48.53 447.999 1 73.7 ? C6 MGP 901 C 1 
HETATM 28 O O6 MGP . . . Q 8 823.317 -47.478 448.597 1 72.88 ? O6 MGP 901 C 1 
HETATM 29 N N1 MGP . . . Q 8 824.702 -49.256 448.316 1 71.78 ? N1 MGP 901 C 1 
HETATM 30 C C2 MGP . . . Q 8 825.03 -50.408 447.665 1 74.97 ? C2 MGP 901 C 1 
HETATM 31 N N2 MGP . . . Q 8 826.14 -51.095 448.022 1 77.62 ? N2 MGP 901 C 1 
HETATM 32 N N3 MGP . . . Q 8 824.299 -50.935 446.639 1 76.94 ? N3 MGP 901 C 1 
HETATM 33 C C4 MGP . . . Q 8 823.177 -50.303 446.229 1 77.46 ? C4 MGP 901 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#