data_6EVX # _model_server_result.job_id viRl55FRU3cQzlRZ-ejJlw _model_server_result.datetime_utc '2025-03-04 16:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6evx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":501}' # _entry.id 6EVX # _exptl.entry_id 6EVX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 94.971 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EVX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 T N N ? 6 W N N ? 6 Y N N ? 6 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 71 A GLU 71 1_555 O MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc2 N O2B GTP . A GTP 501 1_555 O MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc3 H OE2 GLU 71 E GLU 71 1_555 AA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc4 Z O2B GTP . E GTP 502 1_555 AA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc5 I OE2 GLU 71 J GLU 71 1_555 CA MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc6 BA O2B GTP . J GTP 501 1_555 CA MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc7 J OE2 GLU 71 C GLU 71 1_555 FA MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc8 EA O2B GTP . C GTP 502 1_555 FA MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc9 K OE2 GLU 71 L GLU 71 1_555 HA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc10 GA O2B GTP . L GTP 501 1_555 HA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc11 L OE2 GLU 71 K GLU 71 1_555 JA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc12 IA O2B GTP . K GTP 501 1_555 JA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 353 n n P O2 PO4 sing 354 n n P O3 PO4 sing 355 n n P O4 PO4 sing 356 n n # _atom_sites.entry_id 6EVX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 GDP F 1 501 430 GDP GDP . N 4 GTP A 1 501 442 GTP GTP . O 5 MG A 1 502 443 MG MG . P 6 PO4 A 1 503 431 PO4 PO4 . Q 6 PO4 G 1 501 430 PO4 PO4 . R 3 GDP G 1 502 431 GDP GDP . S 3 GDP D 1 501 430 GDP GDP . T 6 PO4 I 1 501 430 PO4 PO4 . U 3 GDP I 1 502 431 GDP GDP . V 3 GDP B 1 501 430 GDP GDP . W 6 PO4 H 1 501 430 PO4 PO4 . X 3 GDP H 1 502 431 GDP GDP . Y 6 PO4 E 1 501 431 PO4 PO4 . Z 4 GTP E 1 502 442 GTP GTP . AA 5 MG E 1 503 443 MG MG . BA 4 GTP J 1 501 442 GTP GTP . CA 5 MG J 1 502 443 MG MG . DA 6 PO4 C 1 501 431 PO4 PO4 . EA 4 GTP C 1 502 442 GTP GTP . FA 5 MG C 1 503 443 MG MG . GA 4 GTP L 1 501 442 GTP GTP . HA 5 MG L 1 502 443 MG MG . IA 4 GTP K 1 501 442 GTP GTP . JA 5 MG K 1 502 443 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . Q 6 45.893 149.169 204.858 1 102.32 ? P PO4 501 G 1 HETATM 2 O O1 PO4 . . . Q 6 46.575 148.318 203.816 1 102.32 ? O1 PO4 501 G 1 HETATM 3 O O2 PO4 . . . Q 6 45.184 150.32 204.188 1 102.32 ? O2 PO4 501 G 1 HETATM 4 O O3 PO4 . . . Q 6 44.894 148.327 205.61 1 102.32 ? O3 PO4 501 G 1 HETATM 5 O O4 PO4 . . . Q 6 46.918 149.714 205.821 1 102.32 ? O4 PO4 501 G 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #