data_6EWE # _model_server_result.job_id XylWh9yRn-ki4eYe4CErsA _model_server_result.datetime_utc '2024-11-07 19:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ewe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6EWE # _exptl.entry_id 6EWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 236.31 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(~{Z})-3-(1-benzothiophen-3-yl)-2-sulfanyl-prop-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.99 _cell.angle_gamma 90 _cell.entry_id 6EWE _cell.length_a 53.19 _cell.length_b 61.01 _cell.length_c 69.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 116 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A ND1 HIS 88 A HIS 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A OD2 ASP 90 A ASP 120 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc4 A NE2 HIS 149 A HIS 179 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 A SG CYS 168 A CYS 198 1_555 B ZN ZN . A ZN 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 A SG CYS 168 A CYS 198 1_555 B ZN ZN . A ZN 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc7 A NE2 HIS 210 A HIS 240 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 E S C0W . A C0W 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 E O1 C0W . A C0W 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 E S C0W . A C0W 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C11 H8 O2 S2' _chem_comp.formula_weight 236.31 _chem_comp.id C0W _chem_comp.mon_nstd_flag . _chem_comp.name '(~{Z})-3-(1-benzothiophen-3-yl)-2-sulfanyl-prop-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C1 C0W sing 70 n n O1 C C0W doub 71 n n C4 S1 C0W sing 72 n y C4 C3 C0W doub 73 n y S1 C5 C0W sing 74 n y C1 C C0W sing 75 n n C1 C2 C0W doub 76 z n C O C0W sing 77 n n C3 C2 C0W sing 78 n n C3 C10 C0W sing 79 n y C5 C10 C0W doub 80 n y C5 C6 C0W sing 81 n y C10 C9 C0W sing 82 n y C6 C7 C0W doub 83 n y C9 C8 C0W doub 84 n y C7 C8 C0W sing 85 n y C4 H1 C0W sing 86 n n C6 H2 C0W sing 87 n n C7 H3 C0W sing 88 n n C8 H4 C0W sing 89 n n C9 H5 C0W sing 90 n n O H6 C0W sing 91 n n C2 H7 C0W sing 92 n n S H8 C0W sing 93 n n # _atom_sites.entry_id 6EWE _atom_sites.fract_transf_matrix[1][1] 0.018801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000982 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 SO4 A 1 303 304 SO4 SO4 . E 4 C0W A 1 304 1 C0W XXX . F 5 GOL A 1 305 1 GOL GOL . G 5 GOL A 1 306 2 GOL GOL . H 6 HOH A 1 401 188 HOH HOH . H 6 HOH A 2 402 80 HOH HOH . H 6 HOH A 3 403 32 HOH HOH . H 6 HOH A 4 404 158 HOH HOH . H 6 HOH A 5 405 166 HOH HOH . H 6 HOH A 6 406 121 HOH HOH . H 6 HOH A 7 407 48 HOH HOH . H 6 HOH A 8 408 25 HOH HOH . H 6 HOH A 9 409 149 HOH HOH . H 6 HOH A 10 410 131 HOH HOH . H 6 HOH A 11 411 23 HOH HOH . H 6 HOH A 12 412 98 HOH HOH . H 6 HOH A 13 413 37 HOH HOH . H 6 HOH A 14 414 38 HOH HOH . H 6 HOH A 15 415 33 HOH HOH . H 6 HOH A 16 416 116 HOH HOH . H 6 HOH A 17 417 59 HOH HOH . H 6 HOH A 18 418 87 HOH HOH . H 6 HOH A 19 419 88 HOH HOH . H 6 HOH A 20 420 7 HOH HOH . H 6 HOH A 21 421 180 HOH HOH . H 6 HOH A 22 422 16 HOH HOH . H 6 HOH A 23 423 26 HOH HOH . H 6 HOH A 24 424 22 HOH HOH . H 6 HOH A 25 425 11 HOH HOH . H 6 HOH A 26 426 13 HOH HOH . H 6 HOH A 27 427 3 HOH HOH . H 6 HOH A 28 428 4 HOH HOH . H 6 HOH A 29 429 18 HOH HOH . H 6 HOH A 30 430 104 HOH HOH . H 6 HOH A 31 431 10 HOH HOH . H 6 HOH A 32 432 17 HOH HOH . H 6 HOH A 33 433 124 HOH HOH . H 6 HOH A 34 434 49 HOH HOH . H 6 HOH A 35 435 2 HOH HOH . H 6 HOH A 36 436 89 HOH HOH . H 6 HOH A 37 437 100 HOH HOH . H 6 HOH A 38 438 68 HOH HOH . H 6 HOH A 39 439 86 HOH HOH . H 6 HOH A 40 440 120 HOH HOH . H 6 HOH A 41 441 71 HOH HOH . H 6 HOH A 42 442 19 HOH HOH . H 6 HOH A 43 443 21 HOH HOH . H 6 HOH A 44 444 51 HOH HOH . H 6 HOH A 45 445 24 HOH HOH . H 6 HOH A 46 446 36 HOH HOH . H 6 HOH A 47 447 106 HOH HOH . H 6 HOH A 48 448 50 HOH HOH . H 6 HOH A 49 449 67 HOH HOH . H 6 HOH A 50 450 29 HOH HOH . H 6 HOH A 51 451 5 HOH HOH . H 6 HOH A 52 452 41 HOH HOH . H 6 HOH A 53 453 132 HOH HOH . H 6 HOH A 54 454 92 HOH HOH . H 6 HOH A 55 455 40 HOH HOH . H 6 HOH A 56 456 159 HOH HOH . H 6 HOH A 57 457 70 HOH HOH . H 6 HOH A 58 458 57 HOH HOH . H 6 HOH A 59 459 94 HOH HOH . H 6 HOH A 60 460 20 HOH HOH . H 6 HOH A 61 461 15 HOH HOH . H 6 HOH A 62 462 14 HOH HOH . H 6 HOH A 63 463 96 HOH HOH . H 6 HOH A 64 464 91 HOH HOH . H 6 HOH A 65 465 62 HOH HOH . H 6 HOH A 66 466 85 HOH HOH . H 6 HOH A 67 467 1 HOH HOH . H 6 HOH A 68 468 138 HOH HOH . H 6 HOH A 69 469 53 HOH HOH . H 6 HOH A 70 470 30 HOH HOH . H 6 HOH A 71 471 122 HOH HOH . H 6 HOH A 72 472 28 HOH HOH . H 6 HOH A 73 473 148 HOH HOH . H 6 HOH A 74 474 55 HOH HOH . H 6 HOH A 75 475 12 HOH HOH . H 6 HOH A 76 476 112 HOH HOH . H 6 HOH A 77 477 99 HOH HOH . H 6 HOH A 78 478 83 HOH HOH . H 6 HOH A 79 479 6 HOH HOH . H 6 HOH A 80 480 47 HOH HOH . H 6 HOH A 81 481 126 HOH HOH . H 6 HOH A 82 482 111 HOH HOH . H 6 HOH A 83 483 63 HOH HOH . H 6 HOH A 84 484 74 HOH HOH . H 6 HOH A 85 485 34 HOH HOH . H 6 HOH A 86 486 127 HOH HOH . H 6 HOH A 87 487 118 HOH HOH . H 6 HOH A 88 488 58 HOH HOH . H 6 HOH A 89 489 110 HOH HOH . H 6 HOH A 90 490 9 HOH HOH . H 6 HOH A 91 491 169 HOH HOH . H 6 HOH A 92 492 54 HOH HOH . H 6 HOH A 93 493 135 HOH HOH . H 6 HOH A 94 494 64 HOH HOH . H 6 HOH A 95 495 133 HOH HOH . H 6 HOH A 96 496 44 HOH HOH . H 6 HOH A 97 497 108 HOH HOH . H 6 HOH A 98 498 167 HOH HOH . H 6 HOH A 99 499 27 HOH HOH . H 6 HOH A 100 500 46 HOH HOH . H 6 HOH A 101 501 39 HOH HOH . H 6 HOH A 102 502 153 HOH HOH . H 6 HOH A 103 503 174 HOH HOH . H 6 HOH A 104 504 113 HOH HOH . H 6 HOH A 105 505 90 HOH HOH . H 6 HOH A 106 506 128 HOH HOH . H 6 HOH A 107 507 8 HOH HOH . H 6 HOH A 108 508 139 HOH HOH . H 6 HOH A 109 509 35 HOH HOH . H 6 HOH A 110 510 119 HOH HOH . H 6 HOH A 111 511 97 HOH HOH . H 6 HOH A 112 512 107 HOH HOH . H 6 HOH A 113 513 76 HOH HOH . H 6 HOH A 114 514 143 HOH HOH . H 6 HOH A 115 515 42 HOH HOH . H 6 HOH A 116 516 161 HOH HOH . H 6 HOH A 117 517 82 HOH HOH . H 6 HOH A 118 518 102 HOH HOH . H 6 HOH A 119 519 176 HOH HOH . H 6 HOH A 120 520 61 HOH HOH . H 6 HOH A 121 521 75 HOH HOH . H 6 HOH A 122 522 190 HOH HOH . H 6 HOH A 123 523 155 HOH HOH . H 6 HOH A 124 524 157 HOH HOH . H 6 HOH A 125 525 137 HOH HOH . H 6 HOH A 126 526 115 HOH HOH . H 6 HOH A 127 527 160 HOH HOH . H 6 HOH A 128 528 79 HOH HOH . H 6 HOH A 129 529 144 HOH HOH . H 6 HOH A 130 530 141 HOH HOH . H 6 HOH A 131 531 191 HOH HOH . H 6 HOH A 132 532 134 HOH HOH . H 6 HOH A 133 533 186 HOH HOH . H 6 HOH A 134 534 43 HOH HOH . H 6 HOH A 135 535 65 HOH HOH . H 6 HOH A 136 536 182 HOH HOH . H 6 HOH A 137 537 189 HOH HOH . H 6 HOH A 138 538 105 HOH HOH . H 6 HOH A 139 539 162 HOH HOH . H 6 HOH A 140 540 177 HOH HOH . H 6 HOH A 141 541 45 HOH HOH . H 6 HOH A 142 542 52 HOH HOH . H 6 HOH A 143 543 69 HOH HOH . H 6 HOH A 144 544 73 HOH HOH . H 6 HOH A 145 545 187 HOH HOH . H 6 HOH A 146 546 95 HOH HOH . H 6 HOH A 147 547 146 HOH HOH . H 6 HOH A 148 548 84 HOH HOH . H 6 HOH A 149 549 109 HOH HOH . H 6 HOH A 150 550 56 HOH HOH . H 6 HOH A 151 551 101 HOH HOH . H 6 HOH A 152 552 31 HOH HOH . H 6 HOH A 153 553 185 HOH HOH . H 6 HOH A 154 554 72 HOH HOH . H 6 HOH A 155 555 183 HOH HOH . H 6 HOH A 156 556 171 HOH HOH . H 6 HOH A 157 557 93 HOH HOH . H 6 HOH A 158 558 163 HOH HOH . H 6 HOH A 159 559 123 HOH HOH . H 6 HOH A 160 560 140 HOH HOH . H 6 HOH A 161 561 60 HOH HOH . H 6 HOH A 162 562 114 HOH HOH . H 6 HOH A 163 563 103 HOH HOH . H 6 HOH A 164 564 117 HOH HOH . H 6 HOH A 165 565 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 C0W . . . E 4 59.986 10.003 25.942 0.8 36.99 ? C4 C0W 304 A 1 HETATM 2 C C5 C0W . . . E 4 58.514 10.293 27.915 0.8 38.9 ? C5 C0W 304 A 1 HETATM 3 C C6 C0W . . . E 4 57.533 10.514 28.876 0.8 39.43 ? C6 C0W 304 A 1 HETATM 4 C C7 C0W . . . E 4 57.731 10.049 30.163 0.8 39.27 ? C7 C0W 304 A 1 HETATM 5 C C8 C0W . . . E 4 58.895 9.385 30.493 0.8 39.54 ? C8 C0W 304 A 1 HETATM 6 C C9 C0W . . . E 4 59.887 9.187 29.542 0.8 38.85 ? C9 C0W 304 A 1 HETATM 7 C C10 C0W . . . E 4 59.722 9.636 28.233 0.8 37.84 ? C10 C0W 304 A 1 HETATM 8 C C C0W . . . E 4 63.73 7.261 26.483 0.8 27.23 ? C C0W 304 A 1 HETATM 9 O O C0W . . . E 4 64.474 7.797 27.452 0.8 28.06 ? O C0W 304 A 1 HETATM 10 C C1 C0W . . . E 4 62.409 7.875 26.258 0.8 28.45 ? C1 C0W 304 A 1 HETATM 11 C C2 C0W . . . E 4 61.86 8.796 27.102 0.8 32.84 ? C2 C0W 304 A 1 HETATM 12 C C3 C0W . . . E 4 60.572 9.483 27.066 0.8 36.06 ? C3 C0W 304 A 1 HETATM 13 O O1 C0W . . . E 4 64.071 6.298 25.848 0.8 27.21 ? O1 C0W 304 A 1 HETATM 14 S S C0W . . . E 4 61.49 7.298 24.859 0.8 22.73 ? S C0W 304 A 1 HETATM 15 S S1 C0W . . . E 4 58.427 10.683 26.225 0.8 38.34 ? S1 C0W 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #