data_6EWR
#
_model_server_result.job_id            vjtuAifgr9X86t6rBtvScA 
_model_server_result.datetime_utc      '2024-11-09 02:20:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ewr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    6EWR 
#
_exptl.entry_id    6EWR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              248.173 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.53 
_cell.angle_gamma         90 
_cell.entry_id            6EWR 
_cell.length_a            78.899 
_cell.length_b            99.562 
_cell.length_c            108.095 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EWR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C8 H13 N2 O5 P' 
_chem_comp.formula_weight    248.173 
_chem_comp.id                PMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "PYRIDOXAMINE-5'-PHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PMP doub 260 n y 
N1 C6 PMP sing 261 n y 
C2 C2A PMP sing 262 n n 
C2 C3 PMP sing 263 n y 
C2A H2A1 PMP sing 264 n n 
C2A H2A2 PMP sing 265 n n 
C2A H2A3 PMP sing 266 n n 
C3 O3 PMP sing 267 n n 
C3 C4 PMP doub 268 n y 
O3 HO3 PMP sing 269 n n 
C4 C4A PMP sing 270 n n 
C4 C5 PMP sing 271 n y 
C4A N4A PMP sing 272 n n 
C4A H4A1 PMP sing 273 n n 
C4A H4A2 PMP sing 274 n n 
N4A HNA1 PMP sing 275 n n 
N4A HNA2 PMP sing 276 n n 
C5 C6 PMP doub 277 n y 
C5 C5A PMP sing 278 n n 
C6 H6 PMP sing 279 n n 
C5A O4P PMP sing 280 n n 
C5A H5A1 PMP sing 281 n n 
C5A H5A2 PMP sing 282 n n 
O4P P PMP sing 283 n n 
P O1P PMP doub 284 n n 
P O2P PMP sing 285 n n 
P O3P PMP sing 286 n n 
O2P HOP2 PMP sing 287 n n 
O3P HOP3 PMP sing 288 n n 
#
_atom_sites.entry_id                     6EWR 
_atom_sites.fract_transf_matrix[1][1]    0.012674 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001675 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PMP A 1 500 500 PMP PMP . 
F 2 PMP B 1 500 500 PMP PMP . 
G 2 PMP C 1 500 500 PMP PMP . 
H 2 PMP D 1 500 500 PMP PMP . 
I 3 HOH A 1 601 227 HOH HOH . 
I 3 HOH A 2 602 661 HOH HOH . 
I 3 HOH A 3 603 686 HOH HOH . 
I 3 HOH A 4 604 675 HOH HOH . 
I 3 HOH A 5 605 641 HOH HOH . 
I 3 HOH A 6 606 577 HOH HOH . 
I 3 HOH A 7 607 643 HOH HOH . 
I 3 HOH A 8 608 604 HOH HOH . 
I 3 HOH A 9 609 586 HOH HOH . 
I 3 HOH A 10 610 605 HOH HOH . 
I 3 HOH A 11 611 1 HOH HOH . 
I 3 HOH A 12 612 581 HOH HOH . 
I 3 HOH A 13 613 592 HOH HOH . 
I 3 HOH A 14 614 568 HOH HOH . 
I 3 HOH A 15 615 656 HOH HOH . 
I 3 HOH A 16 616 645 HOH HOH . 
I 3 HOH A 17 617 677 HOH HOH . 
I 3 HOH A 18 618 631 HOH HOH . 
I 3 HOH A 19 619 665 HOH HOH . 
I 3 HOH A 20 620 725 HOH HOH . 
I 3 HOH A 21 621 648 HOH HOH . 
I 3 HOH A 22 622 83 HOH HOH . 
I 3 HOH A 23 623 575 HOH HOH . 
I 3 HOH A 24 624 599 HOH HOH . 
I 3 HOH A 25 625 82 HOH HOH . 
I 3 HOH A 26 626 710 HOH HOH . 
I 3 HOH A 27 627 582 HOH HOH . 
I 3 HOH A 28 628 690 HOH HOH . 
I 3 HOH A 29 629 7 HOH HOH . 
I 3 HOH A 30 630 602 HOH HOH . 
I 3 HOH A 31 631 720 HOH HOH . 
I 3 HOH A 32 632 607 HOH HOH . 
I 3 HOH A 33 633 640 HOH HOH . 
I 3 HOH A 34 634 573 HOH HOH . 
I 3 HOH A 35 635 708 HOH HOH . 
I 3 HOH A 36 636 613 HOH HOH . 
I 3 HOH A 37 637 620 HOH HOH . 
I 3 HOH A 38 638 232 HOH HOH . 
I 3 HOH A 39 639 598 HOH HOH . 
I 3 HOH A 40 640 114 HOH HOH . 
I 3 HOH A 41 641 696 HOH HOH . 
I 3 HOH A 42 642 583 HOH HOH . 
I 3 HOH A 43 643 715 HOH HOH . 
I 3 HOH A 44 644 562 HOH HOH . 
I 3 HOH A 45 645 681 HOH HOH . 
I 3 HOH A 46 646 724 HOH HOH . 
I 3 HOH A 47 647 722 HOH HOH . 
J 3 HOH B 1 601 653 HOH HOH . 
J 3 HOH B 2 602 55 HOH HOH . 
J 3 HOH B 3 603 593 HOH HOH . 
J 3 HOH B 4 604 669 HOH HOH . 
J 3 HOH B 5 605 22 HOH HOH . 
J 3 HOH B 6 606 580 HOH HOH . 
J 3 HOH B 7 607 629 HOH HOH . 
J 3 HOH B 8 608 588 HOH HOH . 
J 3 HOH B 9 609 728 HOH HOH . 
J 3 HOH B 10 610 137 HOH HOH . 
J 3 HOH B 11 611 561 HOH HOH . 
J 3 HOH B 12 612 608 HOH HOH . 
J 3 HOH B 13 613 625 HOH HOH . 
J 3 HOH B 14 614 644 HOH HOH . 
J 3 HOH B 15 615 21 HOH HOH . 
J 3 HOH B 16 616 685 HOH HOH . 
J 3 HOH B 17 617 658 HOH HOH . 
J 3 HOH B 18 618 697 HOH HOH . 
J 3 HOH B 19 619 671 HOH HOH . 
J 3 HOH B 20 620 718 HOH HOH . 
J 3 HOH B 21 621 610 HOH HOH . 
J 3 HOH B 22 622 574 HOH HOH . 
J 3 HOH B 23 623 204 HOH HOH . 
J 3 HOH B 24 624 667 HOH HOH . 
J 3 HOH B 25 625 151 HOH HOH . 
J 3 HOH B 26 626 662 HOH HOH . 
J 3 HOH B 27 627 591 HOH HOH . 
J 3 HOH B 28 628 635 HOH HOH . 
J 3 HOH B 29 629 24 HOH HOH . 
J 3 HOH B 30 630 694 HOH HOH . 
J 3 HOH B 31 631 210 HOH HOH . 
J 3 HOH B 32 632 569 HOH HOH . 
J 3 HOH B 33 633 58 HOH HOH . 
J 3 HOH B 34 634 655 HOH HOH . 
J 3 HOH B 35 635 595 HOH HOH . 
J 3 HOH B 36 636 652 HOH HOH . 
J 3 HOH B 37 637 559 HOH HOH . 
J 3 HOH B 38 638 578 HOH HOH . 
J 3 HOH B 39 639 693 HOH HOH . 
J 3 HOH B 40 640 649 HOH HOH . 
J 3 HOH B 41 641 563 HOH HOH . 
J 3 HOH B 42 642 589 HOH HOH . 
J 3 HOH B 43 643 564 HOH HOH . 
J 3 HOH B 44 644 51 HOH HOH . 
J 3 HOH B 45 645 706 HOH HOH . 
J 3 HOH B 46 646 26 HOH HOH . 
J 3 HOH B 47 647 723 HOH HOH . 
K 3 HOH C 1 601 603 HOH HOH . 
K 3 HOH C 2 602 711 HOH HOH . 
K 3 HOH C 3 603 618 HOH HOH . 
K 3 HOH C 4 604 704 HOH HOH . 
K 3 HOH C 5 605 707 HOH HOH . 
K 3 HOH C 6 606 6 HOH HOH . 
K 3 HOH C 7 607 726 HOH HOH . 
K 3 HOH C 8 608 576 HOH HOH . 
K 3 HOH C 9 609 691 HOH HOH . 
K 3 HOH C 10 610 657 HOH HOH . 
K 3 HOH C 11 611 709 HOH HOH . 
K 3 HOH C 12 612 679 HOH HOH . 
K 3 HOH C 13 613 3 HOH HOH . 
K 3 HOH C 14 614 614 HOH HOH . 
K 3 HOH C 15 615 10 HOH HOH . 
K 3 HOH C 16 616 687 HOH HOH . 
K 3 HOH C 17 617 717 HOH HOH . 
K 3 HOH C 18 618 201 HOH HOH . 
K 3 HOH C 19 619 194 HOH HOH . 
K 3 HOH C 20 620 632 HOH HOH . 
K 3 HOH C 21 621 597 HOH HOH . 
K 3 HOH C 22 622 594 HOH HOH . 
K 3 HOH C 23 623 197 HOH HOH . 
K 3 HOH C 24 624 118 HOH HOH . 
K 3 HOH C 25 625 651 HOH HOH . 
K 3 HOH C 26 626 626 HOH HOH . 
K 3 HOH C 27 627 2 HOH HOH . 
K 3 HOH C 28 628 668 HOH HOH . 
K 3 HOH C 29 629 703 HOH HOH . 
K 3 HOH C 30 630 639 HOH HOH . 
K 3 HOH C 31 631 590 HOH HOH . 
K 3 HOH C 32 632 714 HOH HOH . 
K 3 HOH C 33 633 727 HOH HOH . 
K 3 HOH C 34 634 567 HOH HOH . 
K 3 HOH C 35 635 638 HOH HOH . 
K 3 HOH C 36 636 623 HOH HOH . 
K 3 HOH C 37 637 584 HOH HOH . 
K 3 HOH C 38 638 20 HOH HOH . 
K 3 HOH C 39 639 719 HOH HOH . 
K 3 HOH C 40 640 633 HOH HOH . 
K 3 HOH C 41 641 660 HOH HOH . 
K 3 HOH C 42 642 630 HOH HOH . 
K 3 HOH C 43 643 680 HOH HOH . 
K 3 HOH C 44 644 683 HOH HOH . 
K 3 HOH C 45 645 701 HOH HOH . 
K 3 HOH C 46 646 615 HOH HOH . 
K 3 HOH C 47 647 601 HOH HOH . 
K 3 HOH C 48 648 571 HOH HOH . 
K 3 HOH C 49 649 678 HOH HOH . 
K 3 HOH C 50 650 700 HOH HOH . 
K 3 HOH C 51 651 699 HOH HOH . 
K 3 HOH C 52 652 636 HOH HOH . 
K 3 HOH C 53 653 619 HOH HOH . 
K 3 HOH C 54 654 712 HOH HOH . 
K 3 HOH C 55 655 721 HOH HOH . 
L 3 HOH D 1 601 642 HOH HOH . 
L 3 HOH D 2 602 647 HOH HOH . 
L 3 HOH D 3 603 611 HOH HOH . 
L 3 HOH D 4 604 565 HOH HOH . 
L 3 HOH D 5 605 663 HOH HOH . 
L 3 HOH D 6 606 634 HOH HOH . 
L 3 HOH D 7 607 596 HOH HOH . 
L 3 HOH D 8 608 698 HOH HOH . 
L 3 HOH D 9 609 616 HOH HOH . 
L 3 HOH D 10 610 689 HOH HOH . 
L 3 HOH D 11 611 579 HOH HOH . 
L 3 HOH D 12 612 617 HOH HOH . 
L 3 HOH D 13 613 627 HOH HOH . 
L 3 HOH D 14 614 666 HOH HOH . 
L 3 HOH D 15 615 692 HOH HOH . 
L 3 HOH D 16 616 705 HOH HOH . 
L 3 HOH D 17 617 587 HOH HOH . 
L 3 HOH D 18 618 19 HOH HOH . 
L 3 HOH D 19 619 716 HOH HOH . 
L 3 HOH D 20 620 572 HOH HOH . 
L 3 HOH D 21 621 624 HOH HOH . 
L 3 HOH D 22 622 36 HOH HOH . 
L 3 HOH D 23 623 702 HOH HOH . 
L 3 HOH D 24 624 650 HOH HOH . 
L 3 HOH D 25 625 695 HOH HOH . 
L 3 HOH D 26 626 621 HOH HOH . 
L 3 HOH D 27 627 274 HOH HOH . 
L 3 HOH D 28 628 78 HOH HOH . 
L 3 HOH D 29 629 659 HOH HOH . 
L 3 HOH D 30 630 670 HOH HOH . 
L 3 HOH D 31 631 612 HOH HOH . 
L 3 HOH D 32 632 9 HOH HOH . 
L 3 HOH D 33 633 628 HOH HOH . 
L 3 HOH D 34 634 112 HOH HOH . 
L 3 HOH D 35 635 672 HOH HOH . 
L 3 HOH D 36 636 646 HOH HOH . 
L 3 HOH D 37 637 676 HOH HOH . 
L 3 HOH D 38 638 637 HOH HOH . 
L 3 HOH D 39 639 154 HOH HOH . 
L 3 HOH D 40 640 23 HOH HOH . 
L 3 HOH D 41 641 622 HOH HOH . 
L 3 HOH D 42 642 654 HOH HOH . 
L 3 HOH D 43 643 234 HOH HOH . 
L 3 HOH D 44 644 290 HOH HOH . 
L 3 HOH D 45 645 664 HOH HOH . 
L 3 HOH D 46 646 682 HOH HOH . 
L 3 HOH D 47 647 684 HOH HOH . 
L 3 HOH D 48 648 688 HOH HOH . 
L 3 HOH D 49 649 585 HOH HOH . 
L 3 HOH D 50 650 606 HOH HOH . 
L 3 HOH D 51 651 600 HOH HOH . 
L 3 HOH D 52 652 560 HOH HOH . 
L 3 HOH D 53 653 713 HOH HOH . 
L 3 HOH D 54 654 566 HOH HOH . 
L 3 HOH D 55 655 570 HOH HOH . 
L 3 HOH D 56 656 674 HOH HOH . 
L 3 HOH D 57 657 673 HOH HOH . 
L 3 HOH D 58 658 609 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PMP . . . F 2 19.964 79.659 1.847 1 20.81 ? N1 PMP 500 B 1 
HETATM 2 C C2 PMP . . . F 2 19.188 80.796 1.923 1 22.18 ? C2 PMP 500 B 1 
HETATM 3 C C2A PMP . . . F 2 17.713 80.772 1.595 1 22.48 ? C2A PMP 500 B 1 
HETATM 4 C C3 PMP . . . F 2 19.78 82.098 2.304 1 22.79 ? C3 PMP 500 B 1 
HETATM 5 O O3 PMP . . . F 2 19.052 83.247 2.392 1 24.45 ? O3 PMP 500 B 1 
HETATM 6 C C4 PMP . . . F 2 21.231 82.109 2.607 1 24.35 ? C4 PMP 500 B 1 
HETATM 7 C C4A PMP . . . F 2 21.873 83.427 2.998 1 25.59 ? C4A PMP 500 B 1 
HETATM 8 N N4A PMP . . . F 2 21.992 83.535 4.47 1 27.51 ? N4A PMP 500 B 1 
HETATM 9 C C5 PMP . . . F 2 21.987 80.797 2.487 1 23.13 ? C5 PMP 500 B 1 
HETATM 10 C C6 PMP . . . F 2 21.286 79.62 2.116 1 22 ? C6 PMP 500 B 1 
HETATM 11 C C5A PMP . . . F 2 23.467 80.749 2.808 1 21.99 ? C5A PMP 500 B 1 
HETATM 12 O O4P PMP . . . F 2 23.705 81.182 4.166 1 19.85 ? O4P PMP 500 B 1 
HETATM 13 P P PMP . . . F 2 25.224 81.57 4.605 1 21.19 ? P PMP 500 B 1 
HETATM 14 O O1P PMP . . . F 2 26.191 80.647 3.928 1 20.69 ? O1P PMP 500 B 1 
HETATM 15 O O2P PMP . . . F 2 25.366 81.514 6.143 1 20.38 ? O2P PMP 500 B 1 
HETATM 16 O O3P PMP . . . F 2 25.57 82.915 4.105 1 21.54 ? O3P PMP 500 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           76 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           16 
#