data_6EX7 # _model_server_result.job_id yawZhTQAgkIzK0lNm6nAow _model_server_result.datetime_utc '2024-11-02 14:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ex7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6EX7 # _exptl.entry_id 6EX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.99 _cell.angle_gamma 90 _cell.entry_id 6EX7 _cell.length_a 145.062 _cell.length_b 39.22 _cell.length_c 75.233 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1 B,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc4 A OE1 GLU 125 A GLU 152 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 A OE2 GLU 125 A GLU 152 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc6 A NE2 HIS 162 A HIS 189 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 A SG CYS 181 A CYS 208 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc8 A OD2 ASP 196 A ASP 223 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 A OE1 GLU 200 A GLU 227 1_555 I CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 A OE2 GLU 200 A GLU 227 1_555 I CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 A NE2 HIS 223 A HIS 250 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc12 C CD CD . A CD 301 1_555 G O71 UNL . A UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc13 D CD CD . A CD 302 1_555 G O71 UNL . A UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 D CD CD . A CD 302 1_555 G N4 UNL . A UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc15 D CD CD . A CD 302 1_555 G O31 UNL . A UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc16 E CD CD . A CD 303 1_555 Q O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc17 E CD CD . A CD 303 1_555 B OE1 GLU 200 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc18 E CD CD . A CD 303 1_555 B OE2 GLU 200 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc19 I CD CD . A CD 307 1_555 Q O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc20 I CD CD . A CD 307 1_555 B OE1 GLU 125 B GLU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc21 I CD CD . A CD 307 1_555 B OE2 GLU 125 B GLU 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc22 I CD CD . A CD 307 1_555 B OD2 ASP 196 B ASP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc23 B NE2 HIS 93 B HIS 120 1_555 J CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc24 B ND1 HIS 95 B HIS 122 1_555 J CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc25 B OD2 ASP 97 B ASP 124 1_555 K CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc26 B NE2 HIS 162 B HIS 189 1_555 J CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc27 B SG CYS 181 B CYS 208 1_555 K CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc28 B NE2 HIS 223 B HIS 250 1_555 K CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc29 J CD CD . B CD 301 1_555 N O72 UNL . B UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc30 K CD CD . B CD 302 1_555 N O32 UNL . B UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc31 K CD CD . B CD 302 1_555 N O72 UNL . B UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc32 K CD CD . B CD 302 1_555 N N4 UNL . B UNL 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EX7 _atom_sites.fract_transf_matrix[1][1] 0.006894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001214 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 301 303 CD CD . D 2 CD A 1 302 304 CD CD . E 2 CD A 1 303 305 CD CD . F 3 CL A 1 304 306 CL CL . G 4 UNL A 1 305 1 UNL UNL . H 5 PG4 A 1 306 6113 PG4 PG4 . I 2 CD A 1 307 307 CD CD . J 2 CD B 1 301 305 CD CD . K 2 CD B 1 302 306 CD CD . L 3 CL B 1 303 308 CL CL . M 3 CL B 1 304 309 CL CL . N 4 UNL B 1 305 2 UNL UNL . O 6 TOE B 1 306 6061 TOE PE4 . P 7 EDO B 1 307 3318 EDO EDO . Q 8 HOH A 1 401 433 HOH HOH . Q 8 HOH A 2 402 430 HOH HOH . Q 8 HOH A 3 403 410 HOH HOH . Q 8 HOH A 4 404 30 HOH HOH . Q 8 HOH A 5 405 444 HOH HOH . Q 8 HOH A 6 406 416 HOH HOH . Q 8 HOH A 7 407 424 HOH HOH . Q 8 HOH A 8 408 420 HOH HOH . Q 8 HOH A 9 409 405 HOH HOH . Q 8 HOH A 10 410 434 HOH HOH . Q 8 HOH A 11 411 431 HOH HOH . Q 8 HOH A 12 412 429 HOH HOH . Q 8 HOH A 13 413 418 HOH HOH . Q 8 HOH A 14 414 437 HOH HOH . Q 8 HOH A 15 415 423 HOH HOH . Q 8 HOH A 16 416 417 HOH HOH . Q 8 HOH A 17 417 443 HOH HOH . Q 8 HOH A 18 418 419 HOH HOH . Q 8 HOH A 19 419 402 HOH HOH . Q 8 HOH A 20 420 13 HOH HOH . Q 8 HOH A 21 421 38 HOH HOH . Q 8 HOH A 22 422 17 HOH HOH . Q 8 HOH A 23 423 413 HOH HOH . Q 8 HOH A 24 424 414 HOH HOH . Q 8 HOH A 25 425 421 HOH HOH . Q 8 HOH A 26 426 424 HOH HOH . Q 8 HOH A 27 427 28 HOH HOH . Q 8 HOH A 28 428 401 HOH HOH . Q 8 HOH A 29 429 427 HOH HOH . Q 8 HOH A 30 430 422 HOH HOH . Q 8 HOH A 31 431 40 HOH HOH . Q 8 HOH A 32 432 412 HOH HOH . Q 8 HOH A 33 433 438 HOH HOH . Q 8 HOH A 34 434 66 HOH HOH . Q 8 HOH A 35 435 43 HOH HOH . Q 8 HOH A 36 436 428 HOH HOH . Q 8 HOH A 37 437 411 HOH HOH . Q 8 HOH A 38 438 408 HOH HOH . Q 8 HOH A 39 439 440 HOH HOH . Q 8 HOH A 40 440 49 HOH HOH . Q 8 HOH A 41 441 407 HOH HOH . Q 8 HOH A 42 442 449 HOH HOH . Q 8 HOH A 43 443 436 HOH HOH . Q 8 HOH A 44 444 439 HOH HOH . Q 8 HOH A 45 445 403 HOH HOH . Q 8 HOH A 46 446 407 HOH HOH . Q 8 HOH A 47 447 448 HOH HOH . Q 8 HOH A 48 448 45 HOH HOH . Q 8 HOH A 49 449 441 HOH HOH . Q 8 HOH A 50 450 409 HOH HOH . Q 8 HOH A 51 451 465 HOH HOH . Q 8 HOH A 52 452 446 HOH HOH . Q 8 HOH A 53 453 426 HOH HOH . Q 8 HOH A 54 454 442 HOH HOH . Q 8 HOH A 55 455 39 HOH HOH . Q 8 HOH A 56 456 404 HOH HOH . Q 8 HOH A 57 457 50 HOH HOH . Q 8 HOH A 58 458 445 HOH HOH . Q 8 HOH A 59 459 406 HOH HOH . Q 8 HOH A 60 460 37 HOH HOH . Q 8 HOH A 61 461 435 HOH HOH . Q 8 HOH A 62 462 432 HOH HOH . Q 8 HOH A 63 463 58 HOH HOH . Q 8 HOH A 64 464 18 HOH HOH . Q 8 HOH A 65 465 55 HOH HOH . Q 8 HOH A 66 466 419 HOH HOH . Q 8 HOH A 67 467 46 HOH HOH . Q 8 HOH A 68 468 425 HOH HOH . Q 8 HOH A 69 469 68 HOH HOH . Q 8 HOH A 70 470 60 HOH HOH . Q 8 HOH A 71 471 24 HOH HOH . Q 8 HOH A 72 472 458 HOH HOH . Q 8 HOH A 73 473 67 HOH HOH . R 8 HOH B 1 401 444 HOH HOH . R 8 HOH B 2 402 422 HOH HOH . R 8 HOH B 3 403 62 HOH HOH . R 8 HOH B 4 404 415 HOH HOH . R 8 HOH B 5 405 404 HOH HOH . R 8 HOH B 6 406 48 HOH HOH . R 8 HOH B 7 407 52 HOH HOH . R 8 HOH B 8 408 431 HOH HOH . R 8 HOH B 9 409 454 HOH HOH . R 8 HOH B 10 410 26 HOH HOH . R 8 HOH B 11 411 448 HOH HOH . R 8 HOH B 12 412 409 HOH HOH . R 8 HOH B 13 413 425 HOH HOH . R 8 HOH B 14 414 451 HOH HOH . R 8 HOH B 15 415 429 HOH HOH . R 8 HOH B 16 416 427 HOH HOH . R 8 HOH B 17 417 15 HOH HOH . R 8 HOH B 18 418 423 HOH HOH . R 8 HOH B 19 419 440 HOH HOH . R 8 HOH B 20 420 416 HOH HOH . R 8 HOH B 21 421 461 HOH HOH . R 8 HOH B 22 422 415 HOH HOH . R 8 HOH B 23 423 2 HOH HOH . R 8 HOH B 24 424 456 HOH HOH . R 8 HOH B 25 425 449 HOH HOH . R 8 HOH B 26 426 402 HOH HOH . R 8 HOH B 27 427 406 HOH HOH . R 8 HOH B 28 428 462 HOH HOH . R 8 HOH B 29 429 441 HOH HOH . R 8 HOH B 30 430 450 HOH HOH . R 8 HOH B 31 431 408 HOH HOH . R 8 HOH B 32 432 483 HOH HOH . R 8 HOH B 33 433 61 HOH HOH . R 8 HOH B 34 434 437 HOH HOH . R 8 HOH B 35 435 414 HOH HOH . R 8 HOH B 36 436 25 HOH HOH . R 8 HOH B 37 437 468 HOH HOH . R 8 HOH B 38 438 418 HOH HOH . R 8 HOH B 39 439 411 HOH HOH . R 8 HOH B 40 440 410 HOH HOH . R 8 HOH B 41 441 467 HOH HOH . R 8 HOH B 42 442 63 HOH HOH . R 8 HOH B 43 443 464 HOH HOH . R 8 HOH B 44 444 452 HOH HOH . R 8 HOH B 45 445 401 HOH HOH . R 8 HOH B 46 446 474 HOH HOH . R 8 HOH B 47 447 405 HOH HOH . R 8 HOH B 48 448 428 HOH HOH . R 8 HOH B 49 449 412 HOH HOH . R 8 HOH B 50 450 453 HOH HOH . R 8 HOH B 51 451 420 HOH HOH . R 8 HOH B 52 452 59 HOH HOH . R 8 HOH B 53 453 435 HOH HOH . R 8 HOH B 54 454 65 HOH HOH . R 8 HOH B 55 455 484 HOH HOH . R 8 HOH B 56 456 41 HOH HOH . R 8 HOH B 57 457 6 HOH HOH . R 8 HOH B 58 458 413 HOH HOH . R 8 HOH B 59 459 433 HOH HOH . R 8 HOH B 60 460 421 HOH HOH . R 8 HOH B 61 461 426 HOH HOH . R 8 HOH B 62 462 417 HOH HOH . R 8 HOH B 63 463 478 HOH HOH . R 8 HOH B 64 464 471 HOH HOH . R 8 HOH B 65 465 438 HOH HOH . R 8 HOH B 66 466 469 HOH HOH . R 8 HOH B 67 467 459 HOH HOH . R 8 HOH B 68 468 432 HOH HOH . R 8 HOH B 69 469 53 HOH HOH . R 8 HOH B 70 470 482 HOH HOH . R 8 HOH B 71 471 403 HOH HOH . R 8 HOH B 72 472 7 HOH HOH . R 8 HOH B 73 473 445 HOH HOH . R 8 HOH B 74 474 430 HOH HOH . R 8 HOH B 75 475 439 HOH HOH . R 8 HOH B 76 476 442 HOH HOH . R 8 HOH B 77 477 479 HOH HOH . R 8 HOH B 78 478 42 HOH HOH . R 8 HOH B 79 479 470 HOH HOH . R 8 HOH B 80 480 480 HOH HOH . R 8 HOH B 81 481 434 HOH HOH . R 8 HOH B 82 482 47 HOH HOH . R 8 HOH B 83 483 443 HOH HOH . R 8 HOH B 84 484 463 HOH HOH . R 8 HOH B 85 485 473 HOH HOH . R 8 HOH B 86 486 44 HOH HOH . R 8 HOH B 87 487 57 HOH HOH . R 8 HOH B 88 488 436 HOH HOH . R 8 HOH B 89 489 51 HOH HOH . R 8 HOH B 90 490 54 HOH HOH . R 8 HOH B 91 491 460 HOH HOH . R 8 HOH B 92 492 16 HOH HOH . R 8 HOH B 93 493 481 HOH HOH . R 8 HOH B 94 494 446 HOH HOH . R 8 HOH B 95 495 32 HOH HOH . R 8 HOH B 96 496 56 HOH HOH . R 8 HOH B 97 497 472 HOH HOH . R 8 HOH B 98 498 447 HOH HOH . R 8 HOH B 99 499 31 HOH HOH . R 8 HOH B 100 500 455 HOH HOH . R 8 HOH B 101 501 35 HOH HOH . R 8 HOH B 102 502 457 HOH HOH . R 8 HOH B 103 503 476 HOH HOH . R 8 HOH B 104 504 64 HOH HOH . R 8 HOH B 105 505 477 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.045 _atom_site.Cartn_y 18.386 _atom_site.Cartn_z 33.008 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #