data_6EXK # _model_server_result.job_id zMYM9I3fsssygfI-iTz44g _model_server_result.datetime_utc '2025-01-11 04:48:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6exk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6EXK # _exptl.entry_id 6EXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.495 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{R})-3-carboxy-7-[(4-methylnaphthalen-1-yl)methyl]-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridin-8-yl]-dimethyl-azanium' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EXK _cell.length_a 92.152 _cell.length_b 112.326 _cell.length_c 47.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 32 A ASN 30 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A OE1 GLU 38 A GLU 36 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 D NA NA . A NA 302 1_555 I O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 D NA NA . A NA 302 1_555 I O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc5 D NA NA . A NA 302 1_555 I O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 B O ASN 32 B ASN 30 1_555 G NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 B OE1 GLU 38 B GLU 36 1_555 G NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc8 G NA NA . B NA 302 1_555 J O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc9 G NA NA . B NA 302 1_555 J O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 G NA NA . B NA 302 1_555 J O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C22 H23 N2 O3 S 1' _chem_comp.formula_weight 395.495 _chem_comp.id C2Q _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R})-3-carboxy-7-[(4-methylnaphthalen-1-yl)methyl]-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridin-8-yl]-dimethyl-azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 C2Q doub 70 n y C26 C27 C2Q sing 71 n y C25 C24 C2Q sing 72 n y C27 C28 C2Q doub 73 n y C24 C23 C2Q doub 74 n y C28 C23 C2Q sing 75 n y C28 C02 C2Q sing 76 n y C23 C05 C2Q sing 77 n y C01 C02 C2Q sing 78 n n C02 C03 C2Q doub 79 n y C05 C06 C2Q sing 80 n n C05 C04 C2Q doub 81 n y C03 C04 C2Q sing 82 n y C06 C07 C2Q sing 83 n n C22 N20 C2Q sing 84 n n C07 C08 C2Q doub 85 n n C07 C19 C2Q sing 86 n n O18 C16 C2Q doub 87 n n N20 C19 C2Q sing 88 n n N20 C21 C2Q sing 89 n n C08 C09 C2Q sing 90 n n C19 C12 C2Q doub 91 n n C09 O10 C2Q doub 92 n n C09 N11 C2Q sing 93 n n C12 N11 C2Q sing 94 n n C12 S13 C2Q sing 95 n n C16 O17 C2Q sing 96 n n C16 C15 C2Q sing 97 n n N11 C15 C2Q sing 98 n n S13 C14 C2Q sing 99 n n C15 C14 C2Q sing 100 n n C01 H013 C2Q sing 101 n n C01 H012 C2Q sing 102 n n C01 H011 C2Q sing 103 n n C03 H031 C2Q sing 104 n n C04 H041 C2Q sing 105 n n C06 H061 C2Q sing 106 n n C06 H062 C2Q sing 107 n n C08 H081 C2Q sing 108 n n C14 H141 C2Q sing 109 n n C14 H142 C2Q sing 110 n n C15 H151 C2Q sing 111 n n O17 H1 C2Q sing 112 n n C21 H212 C2Q sing 113 n n C21 H211 C2Q sing 114 n n C21 H213 C2Q sing 115 n n C22 H223 C2Q sing 116 n n C22 H222 C2Q sing 117 n n C22 H221 C2Q sing 118 n n C24 H241 C2Q sing 119 n n C25 H251 C2Q sing 120 n n C26 H261 C2Q sing 121 n n C27 H271 C2Q sing 122 n n N20 H201 C2Q sing 123 n n # _atom_sites.entry_id 6EXK _atom_sites.fract_transf_matrix[1][1] 0.010852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C2Q A 1 301 301 C2Q C2Q . D 3 NA A 1 302 302 NA NA . E 4 IPA A 1 303 303 IPA IPA . F 2 C2Q B 1 301 301 C2Q C2Q . G 3 NA B 1 302 302 NA NA . H 4 IPA B 1 303 303 IPA IPA . I 5 HOH A 1 401 401 HOH HOH . I 5 HOH A 2 402 402 HOH HOH . I 5 HOH A 3 403 403 HOH HOH . I 5 HOH A 4 404 404 HOH HOH . I 5 HOH A 5 405 405 HOH HOH . I 5 HOH A 6 406 406 HOH HOH . I 5 HOH A 7 407 407 HOH HOH . I 5 HOH A 8 408 408 HOH HOH . I 5 HOH A 9 409 409 HOH HOH . I 5 HOH A 10 410 410 HOH HOH . I 5 HOH A 11 411 411 HOH HOH . I 5 HOH A 12 412 412 HOH HOH . I 5 HOH A 13 413 413 HOH HOH . I 5 HOH A 14 414 414 HOH HOH . I 5 HOH A 15 415 415 HOH HOH . I 5 HOH A 16 416 416 HOH HOH . I 5 HOH A 17 417 417 HOH HOH . I 5 HOH A 18 418 418 HOH HOH . I 5 HOH A 19 419 419 HOH HOH . I 5 HOH A 20 420 420 HOH HOH . I 5 HOH A 21 421 421 HOH HOH . I 5 HOH A 22 422 422 HOH HOH . I 5 HOH A 23 423 423 HOH HOH . I 5 HOH A 24 424 424 HOH HOH . I 5 HOH A 25 425 425 HOH HOH . I 5 HOH A 26 426 426 HOH HOH . I 5 HOH A 27 427 427 HOH HOH . I 5 HOH A 28 428 428 HOH HOH . I 5 HOH A 29 429 429 HOH HOH . I 5 HOH A 30 430 430 HOH HOH . I 5 HOH A 31 431 431 HOH HOH . I 5 HOH A 32 432 432 HOH HOH . I 5 HOH A 33 433 433 HOH HOH . I 5 HOH A 34 434 434 HOH HOH . I 5 HOH A 35 435 435 HOH HOH . I 5 HOH A 36 436 436 HOH HOH . I 5 HOH A 37 437 437 HOH HOH . I 5 HOH A 38 438 438 HOH HOH . I 5 HOH A 39 439 439 HOH HOH . I 5 HOH A 40 440 440 HOH HOH . I 5 HOH A 41 441 441 HOH HOH . I 5 HOH A 42 442 442 HOH HOH . I 5 HOH A 43 443 443 HOH HOH . I 5 HOH A 44 444 444 HOH HOH . J 5 HOH B 1 401 401 HOH HOH . J 5 HOH B 2 402 402 HOH HOH . J 5 HOH B 3 403 403 HOH HOH . J 5 HOH B 4 404 404 HOH HOH . J 5 HOH B 5 405 405 HOH HOH . J 5 HOH B 6 406 406 HOH HOH . J 5 HOH B 7 407 407 HOH HOH . J 5 HOH B 8 408 408 HOH HOH . J 5 HOH B 9 409 409 HOH HOH . J 5 HOH B 10 410 410 HOH HOH . J 5 HOH B 11 411 411 HOH HOH . J 5 HOH B 12 412 412 HOH HOH . J 5 HOH B 13 413 413 HOH HOH . J 5 HOH B 14 414 414 HOH HOH . J 5 HOH B 15 415 415 HOH HOH . J 5 HOH B 16 416 416 HOH HOH . J 5 HOH B 17 417 417 HOH HOH . J 5 HOH B 18 418 418 HOH HOH . J 5 HOH B 19 419 419 HOH HOH . J 5 HOH B 20 420 420 HOH HOH . J 5 HOH B 21 421 421 HOH HOH . J 5 HOH B 22 422 422 HOH HOH . J 5 HOH B 23 423 423 HOH HOH . J 5 HOH B 24 424 424 HOH HOH . J 5 HOH B 25 425 425 HOH HOH . J 5 HOH B 26 426 426 HOH HOH . J 5 HOH B 27 427 427 HOH HOH . J 5 HOH B 28 428 428 HOH HOH . J 5 HOH B 29 429 429 HOH HOH . J 5 HOH B 30 430 430 HOH HOH . J 5 HOH B 31 431 431 HOH HOH . J 5 HOH B 32 432 432 HOH HOH . J 5 HOH B 33 433 433 HOH HOH . J 5 HOH B 34 434 434 HOH HOH . J 5 HOH B 35 435 435 HOH HOH . J 5 HOH B 36 436 436 HOH HOH . J 5 HOH B 37 437 437 HOH HOH . J 5 HOH B 38 438 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 C2Q . . . C 2 -12.522 40.194 -13.964 0.94 69.23 ? C01 C2Q 301 A 1 HETATM 2 C C02 C2Q . . . C 2 -11.657 38.993 -13.635 0.94 72.64 ? C02 C2Q 301 A 1 HETATM 3 C C03 C2Q . . . C 2 -12.031 38.13 -12.608 0.94 56.11 ? C03 C2Q 301 A 1 HETATM 4 C C04 C2Q . . . C 2 -11.276 37.022 -12.271 0.94 59.3 ? C04 C2Q 301 A 1 HETATM 5 C C05 C2Q . . . C 2 -10.108 36.726 -12.946 0.94 62.47 ? C05 C2Q 301 A 1 HETATM 6 C C06 C2Q . . . C 2 -9.317 35.502 -12.548 0.94 49.28 ? C06 C2Q 301 A 1 HETATM 7 C C07 C2Q . . . C 2 -8.064 35.769 -11.759 0.94 53.61 ? C07 C2Q 301 A 1 HETATM 8 C C08 C2Q . . . C 2 -7.607 37.028 -11.455 0.94 49.53 ? C08 C2Q 301 A 1 HETATM 9 C C09 C2Q . . . C 2 -6.391 37.307 -10.691 0.94 49.26 ? C09 C2Q 301 A 1 HETATM 10 O O10 C2Q . . . C 2 -6.011 38.457 -10.436 0.94 45.51 ? O10 C2Q 301 A 1 HETATM 11 N N11 C2Q . . . C 2 -5.625 36.207 -10.228 0.94 59.5 ? N11 C2Q 301 A 1 HETATM 12 C C12 C2Q . . . C 2 -6.101 34.937 -10.546 0.94 58.85 ? C12 C2Q 301 A 1 HETATM 13 S S13 C2Q . . . C 2 -5.016 33.752 -9.879 0.94 56.28 ? S13 C2Q 301 A 1 HETATM 14 C C14 C2Q . . . C 2 -4.212 34.93 -8.744 0.94 65.56 ? C14 C2Q 301 A 1 HETATM 15 C C15 C2Q . . . C 2 -4.374 36.254 -9.45 0.94 75.59 ? C15 C2Q 301 A 1 HETATM 16 C C16 C2Q . . . C 2 -3.186 36.498 -10.378 0.94 64.82 ? C16 C2Q 301 A 1 HETATM 17 O O17 C2Q . . . C 2 -2.059 36.548 -9.87 0.94 58.66 ? O17 C2Q 301 A 1 HETATM 18 O O18 C2Q . . . C 2 -3.475 36.626 -11.638 0.94 64.12 1 O18 C2Q 301 A 1 HETATM 19 C C19 C2Q . . . C 2 -7.276 34.642 -11.285 0.94 55.55 ? C19 C2Q 301 A 1 HETATM 20 N N20 C2Q . . . C 2 -7.621 33.348 -11.519 0.94 51.01 1 N20 C2Q 301 A 1 HETATM 21 C C21 C2Q . . . C 2 -7.858 32.581 -10.226 0.94 44.44 ? C21 C2Q 301 A 1 HETATM 22 C C22 C2Q . . . C 2 -6.708 32.626 -12.507 0.94 48 ? C22 C2Q 301 A 1 HETATM 23 C C23 C2Q . . . C 2 -9.691 37.567 -13.993 0.94 60.71 ? C23 C2Q 301 A 1 HETATM 24 C C24 C2Q . . . C 2 -8.492 37.341 -14.755 0.94 49.91 ? C24 C2Q 301 A 1 HETATM 25 C C25 C2Q . . . C 2 -8.076 38.174 -15.791 0.94 50.28 ? C25 C2Q 301 A 1 HETATM 26 C C26 C2Q . . . C 2 -8.845 39.301 -16.133 0.94 51.96 ? C26 C2Q 301 A 1 HETATM 27 C C27 C2Q . . . C 2 -10.008 39.555 -15.422 0.94 56.2 ? C27 C2Q 301 A 1 HETATM 28 C C28 C2Q . . . C 2 -10.461 38.705 -14.343 0.94 62.6 ? C28 C2Q 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #