data_6EXK # _model_server_result.job_id rqP3LwnzwaR7sPOeDeO8zQ _model_server_result.datetime_utc '2025-01-11 04:52:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6exk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6EXK # _exptl.entry_id 6EXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EXK _cell.length_a 92.152 _cell.length_b 112.326 _cell.length_c 47.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 32 A ASN 30 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A OE1 GLU 38 A GLU 36 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 D NA NA . A NA 302 1_555 I O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 D NA NA . A NA 302 1_555 I O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc5 D NA NA . A NA 302 1_555 I O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 B O ASN 32 B ASN 30 1_555 G NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 B OE1 GLU 38 B GLU 36 1_555 G NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc8 G NA NA . B NA 302 1_555 J O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc9 G NA NA . B NA 302 1_555 J O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 G NA NA . B NA 302 1_555 J O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EXK _atom_sites.fract_transf_matrix[1][1] 0.010852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C2Q A 1 301 301 C2Q C2Q . D 3 NA A 1 302 302 NA NA . E 4 IPA A 1 303 303 IPA IPA . F 2 C2Q B 1 301 301 C2Q C2Q . G 3 NA B 1 302 302 NA NA . H 4 IPA B 1 303 303 IPA IPA . I 5 HOH A 1 401 401 HOH HOH . I 5 HOH A 2 402 402 HOH HOH . I 5 HOH A 3 403 403 HOH HOH . I 5 HOH A 4 404 404 HOH HOH . I 5 HOH A 5 405 405 HOH HOH . I 5 HOH A 6 406 406 HOH HOH . I 5 HOH A 7 407 407 HOH HOH . I 5 HOH A 8 408 408 HOH HOH . I 5 HOH A 9 409 409 HOH HOH . I 5 HOH A 10 410 410 HOH HOH . I 5 HOH A 11 411 411 HOH HOH . I 5 HOH A 12 412 412 HOH HOH . I 5 HOH A 13 413 413 HOH HOH . I 5 HOH A 14 414 414 HOH HOH . I 5 HOH A 15 415 415 HOH HOH . I 5 HOH A 16 416 416 HOH HOH . I 5 HOH A 17 417 417 HOH HOH . I 5 HOH A 18 418 418 HOH HOH . I 5 HOH A 19 419 419 HOH HOH . I 5 HOH A 20 420 420 HOH HOH . I 5 HOH A 21 421 421 HOH HOH . I 5 HOH A 22 422 422 HOH HOH . I 5 HOH A 23 423 423 HOH HOH . I 5 HOH A 24 424 424 HOH HOH . I 5 HOH A 25 425 425 HOH HOH . I 5 HOH A 26 426 426 HOH HOH . I 5 HOH A 27 427 427 HOH HOH . I 5 HOH A 28 428 428 HOH HOH . I 5 HOH A 29 429 429 HOH HOH . I 5 HOH A 30 430 430 HOH HOH . I 5 HOH A 31 431 431 HOH HOH . I 5 HOH A 32 432 432 HOH HOH . I 5 HOH A 33 433 433 HOH HOH . I 5 HOH A 34 434 434 HOH HOH . I 5 HOH A 35 435 435 HOH HOH . I 5 HOH A 36 436 436 HOH HOH . I 5 HOH A 37 437 437 HOH HOH . I 5 HOH A 38 438 438 HOH HOH . I 5 HOH A 39 439 439 HOH HOH . I 5 HOH A 40 440 440 HOH HOH . I 5 HOH A 41 441 441 HOH HOH . I 5 HOH A 42 442 442 HOH HOH . I 5 HOH A 43 443 443 HOH HOH . I 5 HOH A 44 444 444 HOH HOH . J 5 HOH B 1 401 401 HOH HOH . J 5 HOH B 2 402 402 HOH HOH . J 5 HOH B 3 403 403 HOH HOH . J 5 HOH B 4 404 404 HOH HOH . J 5 HOH B 5 405 405 HOH HOH . J 5 HOH B 6 406 406 HOH HOH . J 5 HOH B 7 407 407 HOH HOH . J 5 HOH B 8 408 408 HOH HOH . J 5 HOH B 9 409 409 HOH HOH . J 5 HOH B 10 410 410 HOH HOH . J 5 HOH B 11 411 411 HOH HOH . J 5 HOH B 12 412 412 HOH HOH . J 5 HOH B 13 413 413 HOH HOH . J 5 HOH B 14 414 414 HOH HOH . J 5 HOH B 15 415 415 HOH HOH . J 5 HOH B 16 416 416 HOH HOH . J 5 HOH B 17 417 417 HOH HOH . J 5 HOH B 18 418 418 HOH HOH . J 5 HOH B 19 419 419 HOH HOH . J 5 HOH B 20 420 420 HOH HOH . J 5 HOH B 21 421 421 HOH HOH . J 5 HOH B 22 422 422 HOH HOH . J 5 HOH B 23 423 423 HOH HOH . J 5 HOH B 24 424 424 HOH HOH . J 5 HOH B 25 425 425 HOH HOH . J 5 HOH B 26 426 426 HOH HOH . J 5 HOH B 27 427 427 HOH HOH . J 5 HOH B 28 428 428 HOH HOH . J 5 HOH B 29 429 429 HOH HOH . J 5 HOH B 30 430 430 HOH HOH . J 5 HOH B 31 431 431 HOH HOH . J 5 HOH B 32 432 432 HOH HOH . J 5 HOH B 33 433 433 HOH HOH . J 5 HOH B 34 434 434 HOH HOH . J 5 HOH B 35 435 435 HOH HOH . J 5 HOH B 36 436 436 HOH HOH . J 5 HOH B 37 437 437 HOH HOH . J 5 HOH B 38 438 438 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.35 _atom_site.Cartn_y 20.397 _atom_site.Cartn_z -25.594 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #